Gchil8491.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8491.t1
Unique NameGchil8491.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length385
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000116_piloncontigtig00000116_pilon:91671..92825 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDP05539
PFAMsWD40
Max annot lvl3041|Chlorophyta
KEGG koko:K14818
Evalue9.42e-18
EggNOG OGsKOG0296@1|root,KOG0296@2759|Eukaryota,37QFP@33090|Viridiplantae,34HGF@3041|Chlorophyta
DescriptionWD domain, G-beta repeat
COG categoryS
BRITEko00000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8491Gchil8491Gracilaria chilensis NLEC103_M9 malegenetig00000116_pilon 91671..92825 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8491.t1.stop1Gchil8491.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000116_pilon 91671..91673 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8491.t1.CDS1Gchil8491.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000116_pilon 91671..92825 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8491.t1.exon1Gchil8491.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000116_pilon 91671..92825 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8491.t1.start1Gchil8491.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000116_pilon 92823..92825 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8491.t1Gchil8491.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000116_pilon 91671..92825 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8491.t1 ID=Gchil8491.t1|Name=Gchil8491.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=385bp
MSSDEPPPPQIAARTLRAFTSPVSAISAGHAAFVFSCSSAADRLCLHDTS
SGQQVISLHVPAQRPSHIAVAADGAKCAFATITGAVYIWDMLYPTSMESF
RPSDDHPSPVTDMEWHPRGHVLAVATESGQLYLWDHVVGALLYPLPAHSG
RISAVRWTAHGRLLVSVGASDALLRVWNPRNVNNLADVSAETEHSTPVKW
HARGITCLDTLHDMSRIAITGGPDGSVLLSVLKPESQCGVFASMNAHQSS
VSCVRIAPIGSPRPLRSVSADVNGSVHLFDMDRRLPMGKFSHGNDPVVQL
EFSHHADVLFSAAGHTVMAWDARVAPEEQPPITFGTDAHTVNAFALLNSG
ANLVTACQDGVLRTYDMRYPSGDPPPLPVEEQSH*
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spliced messenger RNA

>Gchil8491.t1 ID=Gchil8491.t1|Name=Gchil8491.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1155bp|location=Sequence derived from alignment at tig00000116_pilon:91671..92825- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAGCGACGAGCCGCCTCCGCCGCAGATCGCCGCGCGCACCCTCCG
CGCCTTCACCTCCCCCGTCTCCGCCATTAGCGCCGGCCACGCCGCCTTCG
TCTTCTCCTGCTCCAGCGCCGCCGATCGTCTCTGTCTGCACGACACCAGC
TCCGGTCAGCAAGTCATCTCGCTGCATGTTCCCGCTCAGCGACCCTCGCA
CATTGCCGTCGCCGCCGATGGCGCAAAGTGCGCCTTTGCCACCATCACGG
GCGCCGTCTATATCTGGGATATGCTCTACCCTACTTCAATGGAATCGTTC
CGCCCATCTGACGACCACCCCTCACCTGTCACCGACATGGAATGGCACCC
GCGCGGCCATGTACTCGCCGTTGCCACCGAATCCGGTCAGCTGTATCTCT
GGGATCACGTTGTTGGCGCGCTCTTATACCCGCTCCCCGCCCATAGCGGC
CGCATCTCCGCCGTGCGCTGGACAGCCCACGGCCGATTGCTCGTTTCCGT
TGGCGCGTCTGACGCCCTGCTGCGCGTTTGGAACCCGAGAAACGTCAACA
ATCTCGCCGATGTCTCTGCGGAGACAGAACATTCCACTCCGGTCAAGTGG
CATGCACGCGGTATCACCTGTCTTGATACGCTTCACGATATGTCCCGCAT
CGCTATTACCGGCGGCCCTGATGGTTCCGTGCTTCTGTCTGTACTTAAGC
CGGAGTCACAATGCGGCGTGTTTGCCTCCATGAATGCCCATCAGTCTTCC
GTCTCTTGTGTGCGCATTGCGCCCATCGGATCTCCGCGTCCTTTACGATC
GGTCAGCGCAGATGTCAACGGCTCGGTTCACCTGTTTGATATGGATCGCC
GTCTTCCGATGGGAAAGTTCTCCCATGGCAACGATCCAGTCGTGCAACTC
GAGTTTTCACATCATGCCGATGTACTATTTTCCGCTGCGGGCCACACTGT
TATGGCGTGGGATGCTCGAGTGGCACCGGAGGAACAACCCCCGATCACCT
TTGGCACCGATGCCCACACTGTCAATGCCTTTGCGTTACTCAACTCTGGT
GCCAATCTCGTCACTGCCTGTCAAGATGGTGTCCTGCGAACTTACGACAT
GAGGTATCCATCCGGTGATCCTCCGCCTCTCCCTGTCGAAGAACAGTCTC
ACTAG
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protein sequence of Gchil8491.t1

>Gchil8491.t1 ID=Gchil8491.t1|Name=Gchil8491.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=385bp
MSSDEPPPPQIAARTLRAFTSPVSAISAGHAAFVFSCSSAADRLCLHDTS
SGQQVISLHVPAQRPSHIAVAADGAKCAFATITGAVYIWDMLYPTSMESF
RPSDDHPSPVTDMEWHPRGHVLAVATESGQLYLWDHVVGALLYPLPAHSG
RISAVRWTAHGRLLVSVGASDALLRVWNPRNVNNLADVSAETEHSTPVKW
HARGITCLDTLHDMSRIAITGGPDGSVLLSVLKPESQCGVFASMNAHQSS
VSCVRIAPIGSPRPLRSVSADVNGSVHLFDMDRRLPMGKFSHGNDPVVQL
EFSHHADVLFSAAGHTVMAWDARVAPEEQPPITFGTDAHTVNAFALLNSG
ANLVTACQDGVLRTYDMRYPSGDPPPLPVEEQSH*
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mRNA from alignment at tig00000116_pilon:91671..92825-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8491.t1 ID=Gchil8491.t1|Name=Gchil8491.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1155bp|location=Sequence derived from alignment at tig00000116_pilon:91671..92825- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCAGCGACGAGCCGCCTCCGCCGCAGATCGCCGCGCGCACCCTCCG
CGCCTTCACCTCCCCCGTCTCCGCCATTAGCGCCGGCCACGCCGCCTTCG
TCTTCTCCTGCTCCAGCGCCGCCGATCGTCTCTGTCTGCACGACACCAGC
TCCGGTCAGCAAGTCATCTCGCTGCATGTTCCCGCTCAGCGACCCTCGCA
CATTGCCGTCGCCGCCGATGGCGCAAAGTGCGCCTTTGCCACCATCACGG
GCGCCGTCTATATCTGGGATATGCTCTACCCTACTTCAATGGAATCGTTC
CGCCCATCTGACGACCACCCCTCACCTGTCACCGACATGGAATGGCACCC
GCGCGGCCATGTACTCGCCGTTGCCACCGAATCCGGTCAGCTGTATCTCT
GGGATCACGTTGTTGGCGCGCTCTTATACCCGCTCCCCGCCCATAGCGGC
CGCATCTCCGCCGTGCGCTGGACAGCCCACGGCCGATTGCTCGTTTCCGT
TGGCGCGTCTGACGCCCTGCTGCGCGTTTGGAACCCGAGAAACGTCAACA
ATCTCGCCGATGTCTCTGCGGAGACAGAACATTCCACTCCGGTCAAGTGG
CATGCACGCGGTATCACCTGTCTTGATACGCTTCACGATATGTCCCGCAT
CGCTATTACCGGCGGCCCTGATGGTTCCGTGCTTCTGTCTGTACTTAAGC
CGGAGTCACAATGCGGCGTGTTTGCCTCCATGAATGCCCATCAGTCTTCC
GTCTCTTGTGTGCGCATTGCGCCCATCGGATCTCCGCGTCCTTTACGATC
GGTCAGCGCAGATGTCAACGGCTCGGTTCACCTGTTTGATATGGATCGCC
GTCTTCCGATGGGAAAGTTCTCCCATGGCAACGATCCAGTCGTGCAACTC
GAGTTTTCACATCATGCCGATGTACTATTTTCCGCTGCGGGCCACACTGT
TATGGCGTGGGATGCTCGAGTGGCACCGGAGGAACAACCCCCGATCACCT
TTGGCACCGATGCCCACACTGTCAATGCCTTTGCGTTACTCAACTCTGGT
GCCAATCTCGTCACTGCCTGTCAAGATGGTGTCCTGCGAACTTACGACAT
GAGGTATCCATCCGGTGATCCTCCGCCTCTCCCTGTCGAAGAACAGTCTC
ACTAG
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Coding sequence (CDS) from alignment at tig00000116_pilon:91671..92825-

>Gchil8491.t1 ID=Gchil8491.t1|Name=Gchil8491.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1155bp|location=Sequence derived from alignment at tig00000116_pilon:91671..92825- (Gracilaria chilensis NLEC103_M9 male)
ATGTCCAGCGACGAGCCGCCTCCGCCGCAGATCGCCGCGCGCACCCTCCG
CGCCTTCACCTCCCCCGTCTCCGCCATTAGCGCCGGCCACGCCGCCTTCG
TCTTCTCCTGCTCCAGCGCCGCCGATCGTCTCTGTCTGCACGACACCAGC
TCCGGTCAGCAAGTCATCTCGCTGCATGTTCCCGCTCAGCGACCCTCGCA
CATTGCCGTCGCCGCCGATGGCGCAAAGTGCGCCTTTGCCACCATCACGG
GCGCCGTCTATATCTGGGATATGCTCTACCCTACTTCAATGGAATCGTTC
CGCCCATCTGACGACCACCCCTCACCTGTCACCGACATGGAATGGCACCC
GCGCGGCCATGTACTCGCCGTTGCCACCGAATCCGGTCAGCTGTATCTCT
GGGATCACGTTGTTGGCGCGCTCTTATACCCGCTCCCCGCCCATAGCGGC
CGCATCTCCGCCGTGCGCTGGACAGCCCACGGCCGATTGCTCGTTTCCGT
TGGCGCGTCTGACGCCCTGCTGCGCGTTTGGAACCCGAGAAACGTCAACA
ATCTCGCCGATGTCTCTGCGGAGACAGAACATTCCACTCCGGTCAAGTGG
CATGCACGCGGTATCACCTGTCTTGATACGCTTCACGATATGTCCCGCAT
CGCTATTACCGGCGGCCCTGATGGTTCCGTGCTTCTGTCTGTACTTAAGC
CGGAGTCACAATGCGGCGTGTTTGCCTCCATGAATGCCCATCAGTCTTCC
GTCTCTTGTGTGCGCATTGCGCCCATCGGATCTCCGCGTCCTTTACGATC
GGTCAGCGCAGATGTCAACGGCTCGGTTCACCTGTTTGATATGGATCGCC
GTCTTCCGATGGGAAAGTTCTCCCATGGCAACGATCCAGTCGTGCAACTC
GAGTTTTCACATCATGCCGATGTACTATTTTCCGCTGCGGGCCACACTGT
TATGGCGTGGGATGCTCGAGTGGCACCGGAGGAACAACCCCCGATCACCT
TTGGCACCGATGCCCACACTGTCAATGCCTTTGCGTTACTCAACTCTGGT
GCCAATCTCGTCACTGCCTGTCAAGATGGTGTCCTGCGAACTTACGACAT
GAGGTATCCATCCGGTGATCCTCCGCCTCTCCCTGTCGAAGAACAGTCTC
ACTAG
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