Gchil2985.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2985.t1
Unique NameGchil2985.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length676
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:693343..695370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2985Gchil2985Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 693343..695370 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2985.t1.stop1Gchil2985.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 693343..693345 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2985.t1.CDS1Gchil2985.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 693343..695370 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2985.t1.exon1Gchil2985.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 693343..695370 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2985.t1.start1Gchil2985.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 695368..695370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2985.t1Gchil2985.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 693343..695370 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2985.t1 ID=Gchil2985.t1|Name=Gchil2985.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=676bp
MGTARKSSRRDRSKRTVWNQHEGRALVGHHVQITWPSDNTVYIALVVDFY
PDTNQHKVLYTADESIEVLELGNGSNQRRWSHARGLESHALVGKQIILYD
HGEAPGDEWFDFMRESSQNITEKFQVVVLQRLTNVIKDDVVGPMAVGKHA
FYRVLNTKNDYLALIDLAATDYELVPPTEFEPEAEAEAEAEPGTEPGTEP
VVSLLSPAPDPGDDDDGREGDEKNEEEYDPDKDLDQEDNSDVEPMSTSNR
RRRQLPEDPQPVLPRRDIHVDPDPDPIDEDMDIDIFKVAKVVSADRIVET
EVTYPSKHGVDVDIDHGDIIASALKGAAALEGSRETRDEPIGRSGAKTKR
RAPPKPSPFPEMDDNEDGQDTASDNEDDGLKSKSRIIHCQVGDFIVLDTG
IGGAPRKAYVEAHLPDTDTHFVAFCDKKGGNLQIKLTPDNHKVLNEAEGK
QLAKAKQDTFEDDEVAMLSDEPPEPKPRRVQKRKAKPPAKPKKRGSRRVG
SPEVKGQTANQDICGRCISIVWPGENLVYVALVLGYSSFSLQHQIVYMVD
HCIETLNLKYREWTLLPREKEPWMDNGLVGKRLYVFWPGEYDDKDSQELA
YLEFGRDTKVPYEAYVLSYVGEGKYKIIYPATEDTEIRVLRATDAENASP
LEKEWDLLDEGVNEIDGLPIIGWTD*
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spliced messenger RNA

>Gchil2985.t1 ID=Gchil2985.t1|Name=Gchil2985.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2028bp|location=Sequence derived from alignment at tig00000106_pilon:693343..695370- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCACTGCGCGTAAGTCGTCGCGCCGCGACAGGAGTAAGCGAACCGT
ATGGAATCAGCACGAAGGGCGCGCGTTGGTCGGCCATCATGTTCAAATCA
CCTGGCCTTCCGACAACACCGTTTACATCGCGCTTGTCGTCGACTTTTAC
CCCGACACAAATCAACACAAAGTCTTGTACACCGCCGATGAATCCATCGA
GGTCTTGGAACTCGGAAACGGATCAAACCAACGCCGTTGGTCCCACGCGC
GAGGCCTCGAAAGCCACGCTTTAGTCGGAAAGCAAATTATTCTCTATGAT
CATGGCGAGGCGCCTGGTGACGAATGGTTCGACTTCATGCGCGAAAGCTC
CCAGAATATCACCGAAAAGTTCCAAGTCGTCGTTTTGCAAAGACTCACCA
ATGTCATCAAGGATGATGTCGTTGGCCCCATGGCTGTTGGCAAGCATGCA
TTTTATCGTGTCCTAAACACCAAAAATGACTATCTTGCCCTAATCGACCT
TGCCGCAACTGATTATGAACTGGTGCCACCCACAGAATTCGAACCCGAGG
CTGAGGCCGAGGCTGAGGCCGAACCTGGGACCGAACCCGGGACGGAACCT
GTCGTTTCACTCCTGTCTCCGGCACCGGACCCCGGTGATGACGATGACGG
GCGAGAAGGGGATGAAAAAAACGAAGAGGAATACGACCCCGATAAGGACT
TGGATCAGGAAGACAATAGTGATGTTGAACCCATGTCCACTTCTAATCGT
CGTCGTCGCCAGCTACCAGAAGACCCTCAACCTGTTCTGCCCCGGAGGGA
TATTCATGTTGATCCGGATCCGGACCCTATAGACGAAGATATGGACATTG
ACATTTTTAAAGTTGCCAAAGTTGTCTCTGCAGATCGAATTGTAGAGACC
GAGGTCACGTACCCTTCAAAACATGGCGTTGATGTCGATATTGATCATGG
TGACATCATCGCATCTGCACTCAAGGGTGCCGCCGCCCTTGAGGGCTCCC
GAGAAACACGCGACGAGCCCATAGGACGTTCTGGAGCTAAGACGAAACGA
AGGGCACCCCCGAAGCCGTCCCCTTTTCCGGAAATGGATGACAACGAGGA
TGGTCAAGATACTGCCTCTGATAATGAAGATGACGGTCTCAAGTCGAAAA
GCAGGATTATCCATTGCCAGGTTGGTGACTTTATTGTCCTAGATACTGGT
ATCGGTGGCGCTCCAAGGAAGGCGTACGTTGAAGCTCATCTACCGGACAC
AGATACCCATTTTGTGGCTTTCTGTGATAAAAAGGGAGGTAATCTACAGA
TAAAGCTTACTCCAGACAATCACAAAGTGTTGAATGAAGCCGAAGGAAAG
CAACTAGCAAAGGCGAAACAAGATACTTTTGAAGACGACGAGGTTGCAAT
GCTCTCCGATGAGCCGCCTGAGCCAAAGCCCAGACGTGTTCAGAAGCGCA
AAGCGAAGCCTCCAGCCAAACCGAAGAAGCGGGGCAGTCGAAGAGTAGGG
TCTCCAGAAGTCAAGGGACAAACAGCAAATCAGGATATTTGTGGAAGGTG
CATATCAATTGTATGGCCTGGAGAGAACCTCGTTTATGTTGCGCTGGTGC
TTGGCTACAGCTCGTTTTCCTTGCAACACCAAATTGTTTACATGGTAGAC
CACTGTATAGAAACTCTCAACTTAAAATACAGGGAATGGACGCTCTTGCC
TCGCGAAAAAGAACCGTGGATGGACAATGGCTTGGTTGGAAAGAGACTTT
ACGTGTTTTGGCCTGGTGAGTATGATGACAAAGACAGCCAAGAGCTGGCG
TACCTAGAATTTGGTCGTGATACCAAGGTTCCTTATGAAGCCTACGTGTT
GAGTTATGTTGGGGAAGGAAAATACAAAATTATCTACCCTGCGACGGAGG
ATACCGAGATTCGAGTGCTAAGAGCCACGGATGCTGAGAATGCATCTCCA
TTGGAAAAGGAGTGGGACTTGCTGGACGAAGGTGTAAATGAAATTGATGG
CTTGCCGATCATTGGATGGACGGATTGA
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protein sequence of Gchil2985.t1

>Gchil2985.t1 ID=Gchil2985.t1|Name=Gchil2985.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=676bp
MGTARKSSRRDRSKRTVWNQHEGRALVGHHVQITWPSDNTVYIALVVDFY
PDTNQHKVLYTADESIEVLELGNGSNQRRWSHARGLESHALVGKQIILYD
HGEAPGDEWFDFMRESSQNITEKFQVVVLQRLTNVIKDDVVGPMAVGKHA
FYRVLNTKNDYLALIDLAATDYELVPPTEFEPEAEAEAEAEPGTEPGTEP
VVSLLSPAPDPGDDDDGREGDEKNEEEYDPDKDLDQEDNSDVEPMSTSNR
RRRQLPEDPQPVLPRRDIHVDPDPDPIDEDMDIDIFKVAKVVSADRIVET
EVTYPSKHGVDVDIDHGDIIASALKGAAALEGSRETRDEPIGRSGAKTKR
RAPPKPSPFPEMDDNEDGQDTASDNEDDGLKSKSRIIHCQVGDFIVLDTG
IGGAPRKAYVEAHLPDTDTHFVAFCDKKGGNLQIKLTPDNHKVLNEAEGK
QLAKAKQDTFEDDEVAMLSDEPPEPKPRRVQKRKAKPPAKPKKRGSRRVG
SPEVKGQTANQDICGRCISIVWPGENLVYVALVLGYSSFSLQHQIVYMVD
HCIETLNLKYREWTLLPREKEPWMDNGLVGKRLYVFWPGEYDDKDSQELA
YLEFGRDTKVPYEAYVLSYVGEGKYKIIYPATEDTEIRVLRATDAENASP
LEKEWDLLDEGVNEIDGLPIIGWTD*
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mRNA from alignment at tig00000106_pilon:693343..695370-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2985.t1 ID=Gchil2985.t1|Name=Gchil2985.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2028bp|location=Sequence derived from alignment at tig00000106_pilon:693343..695370- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCACTGCGCGTAAGTCGTCGCGCCGCGACAGGAGTAAGCGAACCGT
ATGGAATCAGCACGAAGGGCGCGCGTTGGTCGGCCATCATGTTCAAATCA
CCTGGCCTTCCGACAACACCGTTTACATCGCGCTTGTCGTCGACTTTTAC
CCCGACACAAATCAACACAAAGTCTTGTACACCGCCGATGAATCCATCGA
GGTCTTGGAACTCGGAAACGGATCAAACCAACGCCGTTGGTCCCACGCGC
GAGGCCTCGAAAGCCACGCTTTAGTCGGAAAGCAAATTATTCTCTATGAT
CATGGCGAGGCGCCTGGTGACGAATGGTTCGACTTCATGCGCGAAAGCTC
CCAGAATATCACCGAAAAGTTCCAAGTCGTCGTTTTGCAAAGACTCACCA
ATGTCATCAAGGATGATGTCGTTGGCCCCATGGCTGTTGGCAAGCATGCA
TTTTATCGTGTCCTAAACACCAAAAATGACTATCTTGCCCTAATCGACCT
TGCCGCAACTGATTATGAACTGGTGCCACCCACAGAATTCGAACCCGAGG
CTGAGGCCGAGGCTGAGGCCGAACCTGGGACCGAACCCGGGACGGAACCT
GTCGTTTCACTCCTGTCTCCGGCACCGGACCCCGGTGATGACGATGACGG
GCGAGAAGGGGATGAAAAAAACGAAGAGGAATACGACCCCGATAAGGACT
TGGATCAGGAAGACAATAGTGATGTTGAACCCATGTCCACTTCTAATCGT
CGTCGTCGCCAGCTACCAGAAGACCCTCAACCTGTTCTGCCCCGGAGGGA
TATTCATGTTGATCCGGATCCGGACCCTATAGACGAAGATATGGACATTG
ACATTTTTAAAGTTGCCAAAGTTGTCTCTGCAGATCGAATTGTAGAGACC
GAGGTCACGTACCCTTCAAAACATGGCGTTGATGTCGATATTGATCATGG
TGACATCATCGCATCTGCACTCAAGGGTGCCGCCGCCCTTGAGGGCTCCC
GAGAAACACGCGACGAGCCCATAGGACGTTCTGGAGCTAAGACGAAACGA
AGGGCACCCCCGAAGCCGTCCCCTTTTCCGGAAATGGATGACAACGAGGA
TGGTCAAGATACTGCCTCTGATAATGAAGATGACGGTCTCAAGTCGAAAA
GCAGGATTATCCATTGCCAGGTTGGTGACTTTATTGTCCTAGATACTGGT
ATCGGTGGCGCTCCAAGGAAGGCGTACGTTGAAGCTCATCTACCGGACAC
AGATACCCATTTTGTGGCTTTCTGTGATAAAAAGGGAGGTAATCTACAGA
TAAAGCTTACTCCAGACAATCACAAAGTGTTGAATGAAGCCGAAGGAAAG
CAACTAGCAAAGGCGAAACAAGATACTTTTGAAGACGACGAGGTTGCAAT
GCTCTCCGATGAGCCGCCTGAGCCAAAGCCCAGACGTGTTCAGAAGCGCA
AAGCGAAGCCTCCAGCCAAACCGAAGAAGCGGGGCAGTCGAAGAGTAGGG
TCTCCAGAAGTCAAGGGACAAACAGCAAATCAGGATATTTGTGGAAGGTG
CATATCAATTGTATGGCCTGGAGAGAACCTCGTTTATGTTGCGCTGGTGC
TTGGCTACAGCTCGTTTTCCTTGCAACACCAAATTGTTTACATGGTAGAC
CACTGTATAGAAACTCTCAACTTAAAATACAGGGAATGGACGCTCTTGCC
TCGCGAAAAAGAACCGTGGATGGACAATGGCTTGGTTGGAAAGAGACTTT
ACGTGTTTTGGCCTGGTGAGTATGATGACAAAGACAGCCAAGAGCTGGCG
TACCTAGAATTTGGTCGTGATACCAAGGTTCCTTATGAAGCCTACGTGTT
GAGTTATGTTGGGGAAGGAAAATACAAAATTATCTACCCTGCGACGGAGG
ATACCGAGATTCGAGTGCTAAGAGCCACGGATGCTGAGAATGCATCTCCA
TTGGAAAAGGAGTGGGACTTGCTGGACGAAGGTGTAAATGAAATTGATGG
CTTGCCGATCATTGGATGGACGGATTGA
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Coding sequence (CDS) from alignment at tig00000106_pilon:693343..695370-

>Gchil2985.t1 ID=Gchil2985.t1|Name=Gchil2985.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2028bp|location=Sequence derived from alignment at tig00000106_pilon:693343..695370- (Gracilaria chilensis NLEC103_M9 male)
ATGGGCACTGCGCGTAAGTCGTCGCGCCGCGACAGGAGTAAGCGAACCGT
ATGGAATCAGCACGAAGGGCGCGCGTTGGTCGGCCATCATGTTCAAATCA
CCTGGCCTTCCGACAACACCGTTTACATCGCGCTTGTCGTCGACTTTTAC
CCCGACACAAATCAACACAAAGTCTTGTACACCGCCGATGAATCCATCGA
GGTCTTGGAACTCGGAAACGGATCAAACCAACGCCGTTGGTCCCACGCGC
GAGGCCTCGAAAGCCACGCTTTAGTCGGAAAGCAAATTATTCTCTATGAT
CATGGCGAGGCGCCTGGTGACGAATGGTTCGACTTCATGCGCGAAAGCTC
CCAGAATATCACCGAAAAGTTCCAAGTCGTCGTTTTGCAAAGACTCACCA
ATGTCATCAAGGATGATGTCGTTGGCCCCATGGCTGTTGGCAAGCATGCA
TTTTATCGTGTCCTAAACACCAAAAATGACTATCTTGCCCTAATCGACCT
TGCCGCAACTGATTATGAACTGGTGCCACCCACAGAATTCGAACCCGAGG
CTGAGGCCGAGGCTGAGGCCGAACCTGGGACCGAACCCGGGACGGAACCT
GTCGTTTCACTCCTGTCTCCGGCACCGGACCCCGGTGATGACGATGACGG
GCGAGAAGGGGATGAAAAAAACGAAGAGGAATACGACCCCGATAAGGACT
TGGATCAGGAAGACAATAGTGATGTTGAACCCATGTCCACTTCTAATCGT
CGTCGTCGCCAGCTACCAGAAGACCCTCAACCTGTTCTGCCCCGGAGGGA
TATTCATGTTGATCCGGATCCGGACCCTATAGACGAAGATATGGACATTG
ACATTTTTAAAGTTGCCAAAGTTGTCTCTGCAGATCGAATTGTAGAGACC
GAGGTCACGTACCCTTCAAAACATGGCGTTGATGTCGATATTGATCATGG
TGACATCATCGCATCTGCACTCAAGGGTGCCGCCGCCCTTGAGGGCTCCC
GAGAAACACGCGACGAGCCCATAGGACGTTCTGGAGCTAAGACGAAACGA
AGGGCACCCCCGAAGCCGTCCCCTTTTCCGGAAATGGATGACAACGAGGA
TGGTCAAGATACTGCCTCTGATAATGAAGATGACGGTCTCAAGTCGAAAA
GCAGGATTATCCATTGCCAGGTTGGTGACTTTATTGTCCTAGATACTGGT
ATCGGTGGCGCTCCAAGGAAGGCGTACGTTGAAGCTCATCTACCGGACAC
AGATACCCATTTTGTGGCTTTCTGTGATAAAAAGGGAGGTAATCTACAGA
TAAAGCTTACTCCAGACAATCACAAAGTGTTGAATGAAGCCGAAGGAAAG
CAACTAGCAAAGGCGAAACAAGATACTTTTGAAGACGACGAGGTTGCAAT
GCTCTCCGATGAGCCGCCTGAGCCAAAGCCCAGACGTGTTCAGAAGCGCA
AAGCGAAGCCTCCAGCCAAACCGAAGAAGCGGGGCAGTCGAAGAGTAGGG
TCTCCAGAAGTCAAGGGACAAACAGCAAATCAGGATATTTGTGGAAGGTG
CATATCAATTGTATGGCCTGGAGAGAACCTCGTTTATGTTGCGCTGGTGC
TTGGCTACAGCTCGTTTTCCTTGCAACACCAAATTGTTTACATGGTAGAC
CACTGTATAGAAACTCTCAACTTAAAATACAGGGAATGGACGCTCTTGCC
TCGCGAAAAAGAACCGTGGATGGACAATGGCTTGGTTGGAAAGAGACTTT
ACGTGTTTTGGCCTGGTGAGTATGATGACAAAGACAGCCAAGAGCTGGCG
TACCTAGAATTTGGTCGTGATACCAAGGTTCCTTATGAAGCCTACGTGTT
GAGTTATGTTGGGGAAGGAAAATACAAAATTATCTACCCTGCGACGGAGG
ATACCGAGATTCGAGTGCTAAGAGCCACGGATGCTGAGAATGCATCTCCA
TTGGAAAAGGAGTGGGACTTGCTGGACGAAGGTGTAAATGAAATTGATGG
CTTGCCGATCATTGGATGGACGGATTGA
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