Gchil3008.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3008.t1
Unique Name	Gchil3008.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	243

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000106_pilon	contig	tig00000106_pilon:973954..974682 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	112098.XP_008618357.1
Preferred name	OMA1
PFAMs	Peptidase_M48
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K09500
GOs	GO:0003674,GO:0003824,GO:0004175,GO:0004222,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006508,GO:0006515,GO:0006807,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008233,GO:0008237,GO:0009056,GO:0009057,GO:0009987,GO:0016020,GO:0016043,GO:0016787,GO:0019538,GO:0019866,GO:0023052,GO:0030163,GO:0031090,GO:0031929,GO:0031966,GO:0031967,GO:0031975,GO:0035556,GO:0035694,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051603,GO:0051716,GO:0065007,GO:0070011,GO:0071704,GO:0071840,GO:0140096,GO:1901564,GO:1901565,GO:1901575
Evalue	1.07e-32
EggNOG OGs	COG0501@1\|root,KOG2661@2759\|Eukaryota
Description	negative regulation of mitochondrial fusion
COG category	O
BRITE	ko00000,ko03036,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3008	Gchil3008	Gracilaria chilensis NLEC103_M9 male	gene	tig00000106_pilon 973954..974682 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3008.t1.start1	Gchil3008.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000106_pilon 973954..973956 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3008.t1.CDS1	Gchil3008.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000106_pilon 973954..974682 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3008.t1.exon1	Gchil3008.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000106_pilon 973954..974682 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3008.t1.stop1	Gchil3008.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000106_pilon 974680..974682 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3008.t1	Gchil3008.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000106_pilon 973954..974682 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000106_pilon:973954..974682+
coding sequence from alignment at tig00000106_pilon:973954..974682+

mRNA sequence

>Gchil3008.t1 ID=Gchil3008.t1|Name=Gchil3008.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=243bp
MQLGADAYHQLLRAIEPSLLPPSDRRTRRARAVVVRLAAACQAFDPALTA
GFKWSVAVSHDDAPNAVCVPGGRIMLTTGLLRMCAEEELAMVLAHEIAHA
VNRHSAEKMQMHTLLWPIALLLATVFNSHFMSASLTRLLLELPFGRSLER
EADHVGMIILTEACYDPRKAPSIFDKLARVTGEQQGHWLATHVKSIASTH
PMSAQRAAQLKNKSAEMAVRYQHKCASTQHWIADTFAFASMQ*

spliced messenger RNA

>Gchil3008.t1 ID=Gchil3008.t1|Name=Gchil3008.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=729bp|location=Sequence derived from alignment at tig00000106_pilon:973954..974682+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCTGGGCGCTGACGCCTACCACCAATTGCTGCGCGCCATCGAGCC
CTCTTTGTTGCcgccgtcagaccgtcgcacccggcgcgcccgcgccgtcg
tcgtcCGTTTGGCCGCCGCATGTCAAGCTTTCGACCCTGCCCTCACCGCC
GGCTTCAAGTGGTCCGTCGCTGTGTCCCACGATGACGCCCCTAATGCCGT
CTGCGTCCCCGGCGGTCGCATCATGCTCACCACTGGTTTGCTGCGTATGT
GTGCCGAGGAGGAGCTGGCCATGGTGCTGGCGCACGAGATTGCCCATGCT
GTCAATCGCCACTCCGCCGAGAAGATGCAAATGCACACGCTCTTGTGGCC
CATTGCACTGCTGCTAGCTACCGTCTTCAATTCTCACTTCATGTCCGCCT
CCCTCACCCGCCTGCTGCTCGAGCTTCCGTTCGGCAGGAGTCTGGAGAGA
GAGGCCGACCACGTTGGCATGATCATTCTCACCGAGGCTTGTTACGACCC
CCGCAAGGCGCCCTCCATTTTTGACAAGCTTGCCCGTGTCACCGGTGAGC
AACAAGGGCACTGGCTTGCCACCCACGTCAAGTCCATCGCCTCCACCCAC
CCCATGTCGGCGCAGCGCGCTGCGCAACTCAAGAACAAATCCGCCGAGAT
GGCAGTGCGATATCAACACAAATGCGCTTCTACTCAACACTGGATAGCCG
ACACATTCGCGTTTGCCTCTATGCAGTGA

protein sequence of Gchil3008.t1

>Gchil3008.t1 ID=Gchil3008.t1|Name=Gchil3008.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=243bp
MQLGADAYHQLLRAIEPSLLPPSDRRTRRARAVVVRLAAACQAFDPALTA
GFKWSVAVSHDDAPNAVCVPGGRIMLTTGLLRMCAEEELAMVLAHEIAHA
VNRHSAEKMQMHTLLWPIALLLATVFNSHFMSASLTRLLLELPFGRSLER
EADHVGMIILTEACYDPRKAPSIFDKLARVTGEQQGHWLATHVKSIASTH
PMSAQRAAQLKNKSAEMAVRYQHKCASTQHWIADTFAFASMQ*

mRNA from alignment at tig00000106_pilon:973954..974682+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3008.t1 ID=Gchil3008.t1|Name=Gchil3008.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=729bp|location=Sequence derived from alignment at tig00000106_pilon:973954..974682+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGCTGGGCGCTGACGCCTACCACCAATTGCTGCGCGCCATCGAGCC
CTCTTTGTTGCcgccgtcagaccgtcgcacccggcgcgcccgcgccgtcg
tcgtcCGTTTGGCCGCCGCATGTCAAGCTTTCGACCCTGCCCTCACCGCC
GGCTTCAAGTGGTCCGTCGCTGTGTCCCACGATGACGCCCCTAATGCCGT
CTGCGTCCCCGGCGGTCGCATCATGCTCACCACTGGTTTGCTGCGTATGT
GTGCCGAGGAGGAGCTGGCCATGGTGCTGGCGCACGAGATTGCCCATGCT
GTCAATCGCCACTCCGCCGAGAAGATGCAAATGCACACGCTCTTGTGGCC
CATTGCACTGCTGCTAGCTACCGTCTTCAATTCTCACTTCATGTCCGCCT
CCCTCACCCGCCTGCTGCTCGAGCTTCCGTTCGGCAGGAGTCTGGAGAGA
GAGGCCGACCACGTTGGCATGATCATTCTCACCGAGGCTTGTTACGACCC
CCGCAAGGCGCCCTCCATTTTTGACAAGCTTGCCCGTGTCACCGGTGAGC
AACAAGGGCACTGGCTTGCCACCCACGTCAAGTCCATCGCCTCCACCCAC
CCCATGTCGGCGCAGCGCGCTGCGCAACTCAAGAACAAATCCGCCGAGAT
GGCAGTGCGATATCAACACAAATGCGCTTCTACTCAACACTGGATAGCCG
ACACATTCGCGTTTGCCTCTATGCAGTGA

Coding sequence (CDS) from alignment at tig00000106_pilon:973954..974682+

>Gchil3008.t1 ID=Gchil3008.t1|Name=Gchil3008.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=729bp|location=Sequence derived from alignment at tig00000106_pilon:973954..974682+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGCTGGGCGCTGACGCCTACCACCAATTGCTGCGCGCCATCGAGCC
CTCTTTGTTGCcgccgtcagaccgtcgcacccggcgcgcccgcgccgtcg
tcgtcCGTTTGGCCGCCGCATGTCAAGCTTTCGACCCTGCCCTCACCGCC
GGCTTCAAGTGGTCCGTCGCTGTGTCCCACGATGACGCCCCTAATGCCGT
CTGCGTCCCCGGCGGTCGCATCATGCTCACCACTGGTTTGCTGCGTATGT
GTGCCGAGGAGGAGCTGGCCATGGTGCTGGCGCACGAGATTGCCCATGCT
GTCAATCGCCACTCCGCCGAGAAGATGCAAATGCACACGCTCTTGTGGCC
CATTGCACTGCTGCTAGCTACCGTCTTCAATTCTCACTTCATGTCCGCCT
CCCTCACCCGCCTGCTGCTCGAGCTTCCGTTCGGCAGGAGTCTGGAGAGA
GAGGCCGACCACGTTGGCATGATCATTCTCACCGAGGCTTGTTACGACCC
CCGCAAGGCGCCCTCCATTTTTGACAAGCTTGCCCGTGTCACCGGTGAGC
AACAAGGGCACTGGCTTGCCACCCACGTCAAGTCCATCGCCTCCACCCAC
CCCATGTCGGCGCAGCGCGCTGCGCAACTCAAGAACAAATCCGCCGAGAT
GGCAGTGCGATATCAACACAAATGCGCTTCTACTCAACACTGGATAGCCG
ACACATTCGCGTTTGCCTCTATGCAGTGA