Gchil3025.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil3025.t1
Unique Name	Gchil3025.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	358

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000106_pilon	contig	tig00000106_pilon:1155013..1156086 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4787.PITG_02453T0
Max annot lvl	4776\|Peronosporales
Evalue	3.41e-15
EggNOG OGs	KOG2893@1\|root,KOG2893@2759\|Eukaryota,3QCPZ@4776\|Peronosporales
Description	zinc finger
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil3025	Gchil3025	Gracilaria chilensis NLEC103_M9 male	gene	tig00000106_pilon 1155013..1156086 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3025.t1.start1	Gchil3025.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000106_pilon 1155013..1155015 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3025.t1.CDS1	Gchil3025.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000106_pilon 1155013..1156086 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3025.t1.exon1	Gchil3025.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000106_pilon 1155013..1156086 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3025.t1.stop1	Gchil3025.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000106_pilon 1156084..1156086 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil3025.t1	Gchil3025.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000106_pilon 1155013..1156086 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000106_pilon:1155013..1156086+
coding sequence from alignment at tig00000106_pilon:1155013..1156086+

mRNA sequence

>Gchil3025.t1 ID=Gchil3025.t1|Name=Gchil3025.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=358bp
MGRRKKRAAPNARERIFCYYCDRNFQQEQELLAHQKEKHLRCPFCTKRML
SIQSLLVHADQMHNTRVTSVPNSIPGRESVAVDVLGMTGIPDSFYASLDD
PHLPKRSRNAHLSPTALPNTFPTNAYVDVRSAHAASSPAASLPPYSAPHL
YSYPPQPATHAVSYSQHGTHYNYSQPTSNHPAPNYAYPYNASQPNYNAAQ
ALYPSTSAPQPYNASLDASQYANYTQPTSYNYQSATRLPPLRAAYPTTAL
PSYTQSQLPTTNPIAPYTSAEPARSPSSHFNNYAPQKGINTHQYQTHAAA
QQLYPSQPASDVVTPPPASAPPPVPQSKLIFESTCSPEEERAQLPRYMTK
PRCASTS*

spliced messenger RNA

>Gchil3025.t1 ID=Gchil3025.t1|Name=Gchil3025.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00000106_pilon:1155013..1156086+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTCGTAGGAAGAAGCGTGCTGCGCCCAACGCGCGTGAGCGCATTTT
TTGCTACTACTGCGACCGCAACTTTCAGCAAGAGCAGGAACTGCTTGCCC
ATCAGAAGGAAAAGCATCTTCGCTGCCCCTTCTGCACCAAACGCATGCTC
TCCATTCAGAGCCTGCTTGTGCACGCCGACCAAATGCATAACACCCGCGT
CACCAGCGTGCCCAACTCTATTCCGGGCCGAGAATCTGTCGCTGTGGACG
TGCTGGGCATGACCGGCATCCCCGACTCCTTCTATGCCTCTCTCGATGAT
CCGCACCTTCCAAAGCGTTCGAGAAACGCCCATCTTTCCCCAACCGCCCT
CCCAAACACCTTTCCCACCAACGCCTACGTCGACGTGCGTTCCGCCCATG
CAGCATCTTCTCCCGCGGCCTCTCTGCCGCCCTATTCAGCCCCTCACTTG
TATTCGTATCCCCCGCAACCCGCCACGCACGCCGTTTCATATTCCCAACA
TGGTACGCATTACAACTACTCACAACCGACATCCAACCATCCTGCTCCAA
ATTATGCCTACCCCTACAATGCCTCCCAACCGAATTATAACGCGGCACAG
GCGCTGTACCCGTCTACATCTGCGCCGCAGCCGTATAATGCTTCACTTGA
TGCTTCTCAGTACGCCAATTACACGCAGCCAACCTCGTACAACTACCAAT
CAGCCACAAGGCTTCCACCTCTTAGGGCAGCATATCCAACCACCGCGCTG
CCAAGCTACACACAGTCGCAATTGCCAACAACAAATCCGATTGCTCCCTA
CACATCTGCCGAACCGGCGCGCTCACCATCATCTCATTTCAATAATTACG
CACCGCAAAAAGGAATCAATACACATCAATATCAAACGCATGCAGCAGCG
CAACAACTTTATCCTTCTCAACCAGCTTCAGATGTTGTTACTCCCCCCCC
CGCAAGCGCCCCTCCACCTGTGCCGCAAAGCAAGCTCATATTCGAATCTA
CGTGCAGTCCAGAAGAGGAACGAGCACAACTACCCAGGTATATGACGAAG
CCACGCTGTGCAAGCACCTCATAG

protein sequence of Gchil3025.t1

>Gchil3025.t1 ID=Gchil3025.t1|Name=Gchil3025.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=358bp
MGRRKKRAAPNARERIFCYYCDRNFQQEQELLAHQKEKHLRCPFCTKRML
SIQSLLVHADQMHNTRVTSVPNSIPGRESVAVDVLGMTGIPDSFYASLDD
PHLPKRSRNAHLSPTALPNTFPTNAYVDVRSAHAASSPAASLPPYSAPHL
YSYPPQPATHAVSYSQHGTHYNYSQPTSNHPAPNYAYPYNASQPNYNAAQ
ALYPSTSAPQPYNASLDASQYANYTQPTSYNYQSATRLPPLRAAYPTTAL
PSYTQSQLPTTNPIAPYTSAEPARSPSSHFNNYAPQKGINTHQYQTHAAA
QQLYPSQPASDVVTPPPASAPPPVPQSKLIFESTCSPEEERAQLPRYMTK
PRCASTS*

mRNA from alignment at tig00000106_pilon:1155013..1156086+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil3025.t1 ID=Gchil3025.t1|Name=Gchil3025.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1074bp|location=Sequence derived from alignment at tig00000106_pilon:1155013..1156086+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTCGTAGGAAGAAGCGTGCTGCGCCCAACGCGCGTGAGCGCATTTT
TTGCTACTACTGCGACCGCAACTTTCAGCAAGAGCAGGAACTGCTTGCCC
ATCAGAAGGAAAAGCATCTTCGCTGCCCCTTCTGCACCAAACGCATGCTC
TCCATTCAGAGCCTGCTTGTGCACGCCGACCAAATGCATAACACCCGCGT
CACCAGCGTGCCCAACTCTATTCCGGGCCGAGAATCTGTCGCTGTGGACG
TGCTGGGCATGACCGGCATCCCCGACTCCTTCTATGCCTCTCTCGATGAT
CCGCACCTTCCAAAGCGTTCGAGAAACGCCCATCTTTCCCCAACCGCCCT
CCCAAACACCTTTCCCACCAACGCCTACGTCGACGTGCGTTCCGCCCATG
CAGCATCTTCTCCCGCGGCCTCTCTGCCGCCCTATTCAGCCCCTCACTTG
TATTCGTATCCCCCGCAACCCGCCACGCACGCCGTTTCATATTCCCAACA
TGGTACGCATTACAACTACTCACAACCGACATCCAACCATCCTGCTCCAA
ATTATGCCTACCCCTACAATGCCTCCCAACCGAATTATAACGCGGCACAG
GCGCTGTACCCGTCTACATCTGCGCCGCAGCCGTATAATGCTTCACTTGA
TGCTTCTCAGTACGCCAATTACACGCAGCCAACCTCGTACAACTACCAAT
CAGCCACAAGGCTTCCACCTCTTAGGGCAGCATATCCAACCACCGCGCTG
CCAAGCTACACACAGTCGCAATTGCCAACAACAAATCCGATTGCTCCCTA
CACATCTGCCGAACCGGCGCGCTCACCATCATCTCATTTCAATAATTACG
CACCGCAAAAAGGAATCAATACACATCAATATCAAACGCATGCAGCAGCG
CAACAACTTTATCCTTCTCAACCAGCTTCAGATGTTGTTACTCCCCCCCC
CGCAAGCGCCCCTCCACCTGTGCCGCAAAGCAAGCTCATATTCGAATCTA
CGTGCAGTCCAGAAGAGGAACGAGCACAACTACCCAGGTATATGACGAAG
CCACGCTGTGCAAGCACCTCATAG

Coding sequence (CDS) from alignment at tig00000106_pilon:1155013..1156086+

>Gchil3025.t1 ID=Gchil3025.t1|Name=Gchil3025.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1074bp|location=Sequence derived from alignment at tig00000106_pilon:1155013..1156086+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTCGTAGGAAGAAGCGTGCTGCGCCCAACGCGCGTGAGCGCATTTT
TTGCTACTACTGCGACCGCAACTTTCAGCAAGAGCAGGAACTGCTTGCCC
ATCAGAAGGAAAAGCATCTTCGCTGCCCCTTCTGCACCAAACGCATGCTC
TCCATTCAGAGCCTGCTTGTGCACGCCGACCAAATGCATAACACCCGCGT
CACCAGCGTGCCCAACTCTATTCCGGGCCGAGAATCTGTCGCTGTGGACG
TGCTGGGCATGACCGGCATCCCCGACTCCTTCTATGCCTCTCTCGATGAT
CCGCACCTTCCAAAGCGTTCGAGAAACGCCCATCTTTCCCCAACCGCCCT
CCCAAACACCTTTCCCACCAACGCCTACGTCGACGTGCGTTCCGCCCATG
CAGCATCTTCTCCCGCGGCCTCTCTGCCGCCCTATTCAGCCCCTCACTTG
TATTCGTATCCCCCGCAACCCGCCACGCACGCCGTTTCATATTCCCAACA
TGGTACGCATTACAACTACTCACAACCGACATCCAACCATCCTGCTCCAA
ATTATGCCTACCCCTACAATGCCTCCCAACCGAATTATAACGCGGCACAG
GCGCTGTACCCGTCTACATCTGCGCCGCAGCCGTATAATGCTTCACTTGA
TGCTTCTCAGTACGCCAATTACACGCAGCCAACCTCGTACAACTACCAAT
CAGCCACAAGGCTTCCACCTCTTAGGGCAGCATATCCAACCACCGCGCTG
CCAAGCTACACACAGTCGCAATTGCCAACAACAAATCCGATTGCTCCCTA
CACATCTGCCGAACCGGCGCGCTCACCATCATCTCATTTCAATAATTACG
CACCGCAAAAAGGAATCAATACACATCAATATCAAACGCATGCAGCAGCG
CAACAACTTTATCCTTCTCAACCAGCTTCAGATGTTGTTACTCCCCCCCC
CGCAAGCGCCCCTCCACCTGTGCCGCAAAGCAAGCTCATATTCGAATCTA
CGTGCAGTCCAGAAGAGGAACGAGCACAACTACCCAGGTATATGACGAAG
CCACGCTGTGCAAGCACCTCATAG