Gchil3033.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil3033.t1
Unique NameGchil3033.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length494
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000106_piloncontigtig00000106_pilon:1206610..1208091 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog44056.XP_009039164.1
PFAMsGround-like,Hint,Kelch_4
Max annot lvl2759|Eukaryota
KEGG koko:K06224,ko:K11990,ko:K16669
KEGG Pathwayko04340,ko04341,ko04391,ko04392,map04340,map04341,map04391,map04392
KEGG ModuleM00678
GOsGO:0003002,GO:0003674,GO:0003824,GO:0004175,GO:0005102,GO:0005488,GO:0005496,GO:0005515,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0007154,GO:0007267,GO:0007275,GO:0007350,GO:0007365,GO:0007367,GO:0007389,GO:0008150,GO:0008152,GO:0008233,GO:0008289,GO:0009790,GO:0009880,GO:0009987,GO:0010467,GO:0015485,GO:0016020,GO:0016485,GO:0016540,GO:0016787,GO:0019538,GO:0023052,GO:0032501,GO:0032502,GO:0032934,GO:0035282,GO:0036094,GO:0043170,GO:0043178,GO:0044238,GO:0044464,GO:0048856,GO:0051604,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0140096,GO:1901564
Evalue4.44e-11
EggNOG OGsKOG3638@1|root,KOG3638@2759|Eukaryota
Descriptionintein-mediated protein splicing
COG categoryM
BRITEko00000,ko00001,ko00002,ko00536,ko01002,ko04516
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil3033Gchil3033Gracilaria chilensis NLEC103_M9 malegenetig00000106_pilon 1206610..1208091 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3033.t1.stop1Gchil3033.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000106_pilon 1206610..1206612 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3033.t1.CDS1Gchil3033.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000106_pilon 1206610..1208091 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3033.t1.exon1Gchil3033.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000106_pilon 1206610..1208091 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3033.t1.start1Gchil3033.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000106_pilon 1208089..1208091 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil3033.t1Gchil3033.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000106_pilon 1206610..1208091 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil3033.t1 ID=Gchil3033.t1|Name=Gchil3033.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=494bp
MKRAGAGMVALCLSLGAALRAAAAAASAQANARDMGRDMQPAQIPGLYEN
VALPPYSAACPDFVRVQQVEPVLSPLGVLYVIPHQFISVPFSGGGAQTCA
ASATTSKYTAASATILRRSADVPLDTNNSLVAAFVAAREAFFLGQEAGDR
VCGALLTTGGSVSMWVAPQRVVQAQAGRGFRINFRQGFKYVYYFANGAGS
APCLLRGDGAEQAQVVAVATPSASPSASGAPVVVGGLGDGDGDGDGDGDA
DADADADEDEDEDEDVTILSPVPVETAALSGGALDAAPDVGDIAGVLDAG
ANVEAVEDVDDAVEVLETSERAACFPAHSMVWRKHDRVRMDAVRVGDAIL
ANDLTHSTVVVAFTHASGGVWTRMVQLHTQHNRTLTLSRGHLALTRAREV
AAEHVRVGDVLTDVQFGASAVTRVSWRRVRGLYNPQPTAGRLVVDGVVVS
AYTRATPSLSSAHALLAPLRALHALGARRTLCALATLTRLYTL*
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spliced messenger RNA

>Gchil3033.t1 ID=Gchil3033.t1|Name=Gchil3033.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1482bp|location=Sequence derived from alignment at tig00000106_pilon:1206610..1208091- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCGGGCGGGCGCAGGCATGGTGGCGCTGTGTCTGTCGCTCGGCGC
CGCGCTACGCGCCGCCGCAGCAGCAGCGTCAGCTCAAGCAAACGCGCGCG
ACATGGGGCGCGACATGCAGCCCGCGCAGATCCCCGGGCTGTACGAGAAC
GTGGCGCTGCCGCCATACTCGGCCGCATGTCCCGACTTTGTGCGCGTGCA
ACAGGTGGAACCCGTGCTATCGCCGTTGGGCGTGCTCTACGTGATTCCGC
ACCAATTCATCTCGGTGCCGTTTTCCGGCGGCGGCGCGCAAACATGCGCA
GCGTCGGCCACCACCTCAAAGTACACAGCCGCGTCGGCCACAATCCTGCG
CCGCAGCGCAGACGTGCCGTTGGACACGAACAATTCGTTGGTGGCGGCGT
TTGTGGCGGCGCGCGAGGCGTTCTTCCTCGGACAGGAGGCGGGCGATCGT
GTGTGTGGGGCGCTGCTCACGACGGGCGGAAGCGTGTCCATGTGGGTGGC
ACCACAGCGTGTGGTGCAGGCACAGGCGGGACGTGGGTTTCGTATCAACT
TTCGACAAGGCTTCAAGTATGTGTACTACTTTGCGAACGGCGCGGGTAGC
GCGCCGTGCTTGCTGCGCGGCGACGGCGCGGAACAAGCGCAGGTGGTGGC
GGTGGCCACACCGAGCGCATCGCCGTCCGCGTCGGGCGCGCCCGTGGTGG
TGGGCGGCCTCGGCGACGGCGACGGCGACGGCGACGGCGACGGCGACGCG
GATGCGGATGCGGATGCGGATGAGGATGAGGATGAGGATGAGGATGTGAC
AATTCTGTCGCCCGTGCCGGTGGAGACGGCGGCGCTGAGCGGCGGGGCGC
TGGACGCGGCGCCGGACGTGGGCGACATTGCCGGTGTGCTGGACGCGGGA
GCAAACGTGGAGGCGGTTGAGGACGTAGACGACGCGGTGGAGGTATTGGA
GACGAGCGAACGAGCGGCATGCTTCCCAGCACACAGCATGGTGTGGCGCA
AGCACGACCGCGTACGAATGGACGCCGTTCGCGTGGGCGACGCGATCCTC
GCCAACGACCTGACACACAGCACGGTGGTAGTGGCGTTCACGCACGCGAG
CGGCGGCGTGTGGACGCGCATGGTGCAGCTGCACACGCAGCACAACCGCA
CGCTAACGCTGTCGCGCGGGCATCTGGCGCTGACGCGCGCGCGCGAGGTG
GCGGCCGAACACGTGCGCGTGGGCGACGTGTTGACCGACGTGCAGTTCGG
CGCGTCGGCGGTGACGCGCGTGAGTTGGCGCCGCGTGCGCGGCTTGTACA
ACCCGCAGCCCACCGCCGGACGTCTCGTGGTGGACGGCGTGGTGGTGAGC
GCCTACACGCGTGCCACGCCTTCGCTGTCTTCGGCGCACGCTTTGCTGGC
GCCTTTACGCGCCTTACACGCGCTTGGCGCGCGACGCACGCTGTGTGCGC
TGGCCACGCTTACCCGTCTGTACACGCTGTAG
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protein sequence of Gchil3033.t1

>Gchil3033.t1 ID=Gchil3033.t1|Name=Gchil3033.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=494bp
MKRAGAGMVALCLSLGAALRAAAAAASAQANARDMGRDMQPAQIPGLYEN
VALPPYSAACPDFVRVQQVEPVLSPLGVLYVIPHQFISVPFSGGGAQTCA
ASATTSKYTAASATILRRSADVPLDTNNSLVAAFVAAREAFFLGQEAGDR
VCGALLTTGGSVSMWVAPQRVVQAQAGRGFRINFRQGFKYVYYFANGAGS
APCLLRGDGAEQAQVVAVATPSASPSASGAPVVVGGLGDGDGDGDGDGDA
DADADADEDEDEDEDVTILSPVPVETAALSGGALDAAPDVGDIAGVLDAG
ANVEAVEDVDDAVEVLETSERAACFPAHSMVWRKHDRVRMDAVRVGDAIL
ANDLTHSTVVVAFTHASGGVWTRMVQLHTQHNRTLTLSRGHLALTRAREV
AAEHVRVGDVLTDVQFGASAVTRVSWRRVRGLYNPQPTAGRLVVDGVVVS
AYTRATPSLSSAHALLAPLRALHALGARRTLCALATLTRLYTL*
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mRNA from alignment at tig00000106_pilon:1206610..1208091-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil3033.t1 ID=Gchil3033.t1|Name=Gchil3033.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1482bp|location=Sequence derived from alignment at tig00000106_pilon:1206610..1208091- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCGGGCGGGCGCAGGCATGGTGGCGCTGTGTCTGTCGCTCGGCGC
CGCGCTACGCGCCGCCGCAGCAGCAGCGTCAGCTCAAGCAAACGCGCGCG
ACATGGGGCGCGACATGCAGCCCGCGCAGATCCCCGGGCTGTACGAGAAC
GTGGCGCTGCCGCCATACTCGGCCGCATGTCCCGACTTTGTGCGCGTGCA
ACAGGTGGAACCCGTGCTATCGCCGTTGGGCGTGCTCTACGTGATTCCGC
ACCAATTCATCTCGGTGCCGTTTTCCGGCGGCGGCGCGCAAACATGCGCA
GCGTCGGCCACCACCTCAAAGTACACAGCCGCGTCGGCCACAATCCTGCG
CCGCAGCGCAGACGTGCCGTTGGACACGAACAATTCGTTGGTGGCGGCGT
TTGTGGCGGCGCGCGAGGCGTTCTTCCTCGGACAGGAGGCGGGCGATCGT
GTGTGTGGGGCGCTGCTCACGACGGGCGGAAGCGTGTCCATGTGGGTGGC
ACCACAGCGTGTGGTGCAGGCACAGGCGGGACGTGGGTTTCGTATCAACT
TTCGACAAGGCTTCAAGTATGTGTACTACTTTGCGAACGGCGCGGGTAGC
GCGCCGTGCTTGCTGCGCGGCGACGGCGCGGAACAAGCGCAGGTGGTGGC
GGTGGCCACACCGAGCGCATCGCCGTCCGCGTCGGGCGCGCCCGTGGTGG
TGGGCGGCCTCGGCGACGGCGACGGCGACGGCGACGGCGACGGCGACGCG
GATGCGGATGCGGATGCGGATGAGGATGAGGATGAGGATGAGGATGTGAC
AATTCTGTCGCCCGTGCCGGTGGAGACGGCGGCGCTGAGCGGCGGGGCGC
TGGACGCGGCGCCGGACGTGGGCGACATTGCCGGTGTGCTGGACGCGGGA
GCAAACGTGGAGGCGGTTGAGGACGTAGACGACGCGGTGGAGGTATTGGA
GACGAGCGAACGAGCGGCATGCTTCCCAGCACACAGCATGGTGTGGCGCA
AGCACGACCGCGTACGAATGGACGCCGTTCGCGTGGGCGACGCGATCCTC
GCCAACGACCTGACACACAGCACGGTGGTAGTGGCGTTCACGCACGCGAG
CGGCGGCGTGTGGACGCGCATGGTGCAGCTGCACACGCAGCACAACCGCA
CGCTAACGCTGTCGCGCGGGCATCTGGCGCTGACGCGCGCGCGCGAGGTG
GCGGCCGAACACGTGCGCGTGGGCGACGTGTTGACCGACGTGCAGTTCGG
CGCGTCGGCGGTGACGCGCGTGAGTTGGCGCCGCGTGCGCGGCTTGTACA
ACCCGCAGCCCACCGCCGGACGTCTCGTGGTGGACGGCGTGGTGGTGAGC
GCCTACACGCGTGCCACGCCTTCGCTGTCTTCGGCGCACGCTTTGCTGGC
GCCTTTACGCGCCTTACACGCGCTTGGCGCGCGACGCACGCTGTGTGCGC
TGGCCACGCTTACCCGTCTGTACACGCTGTAG
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Coding sequence (CDS) from alignment at tig00000106_pilon:1206610..1208091-

>Gchil3033.t1 ID=Gchil3033.t1|Name=Gchil3033.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1482bp|location=Sequence derived from alignment at tig00000106_pilon:1206610..1208091- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCGGGCGGGCGCAGGCATGGTGGCGCTGTGTCTGTCGCTCGGCGC
CGCGCTACGCGCCGCCGCAGCAGCAGCGTCAGCTCAAGCAAACGCGCGCG
ACATGGGGCGCGACATGCAGCCCGCGCAGATCCCCGGGCTGTACGAGAAC
GTGGCGCTGCCGCCATACTCGGCCGCATGTCCCGACTTTGTGCGCGTGCA
ACAGGTGGAACCCGTGCTATCGCCGTTGGGCGTGCTCTACGTGATTCCGC
ACCAATTCATCTCGGTGCCGTTTTCCGGCGGCGGCGCGCAAACATGCGCA
GCGTCGGCCACCACCTCAAAGTACACAGCCGCGTCGGCCACAATCCTGCG
CCGCAGCGCAGACGTGCCGTTGGACACGAACAATTCGTTGGTGGCGGCGT
TTGTGGCGGCGCGCGAGGCGTTCTTCCTCGGACAGGAGGCGGGCGATCGT
GTGTGTGGGGCGCTGCTCACGACGGGCGGAAGCGTGTCCATGTGGGTGGC
ACCACAGCGTGTGGTGCAGGCACAGGCGGGACGTGGGTTTCGTATCAACT
TTCGACAAGGCTTCAAGTATGTGTACTACTTTGCGAACGGCGCGGGTAGC
GCGCCGTGCTTGCTGCGCGGCGACGGCGCGGAACAAGCGCAGGTGGTGGC
GGTGGCCACACCGAGCGCATCGCCGTCCGCGTCGGGCGCGCCCGTGGTGG
TGGGCGGCCTCGGCGACGGCGACGGCGACGGCGACGGCGACGGCGACGCG
GATGCGGATGCGGATGCGGATGAGGATGAGGATGAGGATGAGGATGTGAC
AATTCTGTCGCCCGTGCCGGTGGAGACGGCGGCGCTGAGCGGCGGGGCGC
TGGACGCGGCGCCGGACGTGGGCGACATTGCCGGTGTGCTGGACGCGGGA
GCAAACGTGGAGGCGGTTGAGGACGTAGACGACGCGGTGGAGGTATTGGA
GACGAGCGAACGAGCGGCATGCTTCCCAGCACACAGCATGGTGTGGCGCA
AGCACGACCGCGTACGAATGGACGCCGTTCGCGTGGGCGACGCGATCCTC
GCCAACGACCTGACACACAGCACGGTGGTAGTGGCGTTCACGCACGCGAG
CGGCGGCGTGTGGACGCGCATGGTGCAGCTGCACACGCAGCACAACCGCA
CGCTAACGCTGTCGCGCGGGCATCTGGCGCTGACGCGCGCGCGCGAGGTG
GCGGCCGAACACGTGCGCGTGGGCGACGTGTTGACCGACGTGCAGTTCGG
CGCGTCGGCGGTGACGCGCGTGAGTTGGCGCCGCGTGCGCGGCTTGTACA
ACCCGCAGCCCACCGCCGGACGTCTCGTGGTGGACGGCGTGGTGGTGAGC
GCCTACACGCGTGCCACGCCTTCGCTGTCTTCGGCGCACGCTTTGCTGGC
GCCTTTACGCGCCTTACACGCGCTTGGCGCGCGACGCACGCTGTGTGCGC
TGGCCACGCTTACCCGTCTGTACACGCTGTAG
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