Gchil8678.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8678.t1
Unique NameGchil8678.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length248
Homology
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BLAST of Gchil8678.t1 vs. uniprot
Match: A0A2V3IQM1_9FLOR (Signal recognition particle 43 kDa protein, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQM1_9FLOR)

HSP 1 Score: 258 bits (660), Expect = 1.560e-83
Identity = 147/250 (58.80%), Postives = 177/250 (70.80%), Query Frame = 0 
Query:    1 MSAAEGEEDNPDENVMQGPSQAPSKAGISTVGLSEPETAFIEACYNADVEKIESMLNDGISADTCDVNGRTALHFCAGNGLPTLCEKLLEXXXXXXXXXXXXXXXXXXXXGYVKVDTARMLIKNSADANITSSAGKLAVEIAEEMLEKTPAKRFFVANRNHDRLKELVQLLDESTELEEGEXXXXXXXQ-SGKKTTVNENGEITEETENAKFVVRVKAKGEGSAS---ATPAVKVDDVKVTIKIKEGGKK 246
            M  A   +   +E++MQGPSQAP+KAG+STVGL E E  FIEACYNADVE IESM+ +   A   DVNGR+ALHFCAGNGLPTLC KL++                    GYVK+DT ++L++  ADANI S  GKLAVEIAE+M EKTPAK+FF AN  H++LKE+V +LDE+TE+EE  XXXX   + +G   +VNE G+ITEETENAKFVVRVK +GE S+       AVKVDDVKVTIKIKE  KK
Sbjct:    1 MCDANAPQQEQEESIMQGPSQAPTKAGVSTVGLGEREAKFIEACYNADVESIESMMEEDFVASVTDVNGRSALHFCAGNGLPTLCTKLMDRGATMDKQDVLGFTPLHMATGYVKLDTVKLLVERGADANIASFDGKLAVEIAEDMFEKTPAKQFFRANPTHEKLKEMVDVLDEATEVEEXXXXXXGLEEENGVTRSVNEFGDITEETENAKFVVRVKPRGEASSGNGIERRAVKVDDVKVTIKIKEAEKK 250
The following BLAST results are available for this feature:
BLAST of Gchil8678.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IQM1_9FLOR1.560e-8358.80Signal recognition particle 43 kDa protein, chloro... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 164..187
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 172..207
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 186..207
NoneNo IPR availablePANTHERPTHR24128HOMEOBOX PROTEIN WARIAIcoord: 34..181
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 101..132
score: 9.701759
NoneNo IPR availablePROSITEPS50297ANK_REP_REGIONcoord: 68..99
score: 10.365044
IPR002110Ankyrin repeatSMARTSM00248ANK_2acoord: 35..64
e-value: 3800.0
score: 0.7
coord: 68..97
e-value: 0.002
score: 27.4
coord: 101..130
e-value: 0.0074
score: 25.5
IPR002110Ankyrin repeatPFAMPF12796Ank_2coord: 42..131
e-value: 2.7E-10
score: 40.7
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 101..133
score: 11.06011
IPR002110Ankyrin repeatPROSITEPS50088ANK_REPEATcoord: 68..100
score: 11.327209
IPR036770Ankyrin repeat-containing domain superfamilyGENE3D1.25.40.20coord: 7..152
e-value: 1.0E-28
score: 101.9
IPR036770Ankyrin repeat-containing domain superfamilySUPERFAMILY48403Ankyrin repeatcoord: 34..144
IPR030300Signal recognition particle 43kDa proteinPANTHERPTHR24128:SF43SIGNAL RECOGNITION PARTICLE 43 KDA PROTEIN, CHLOROPLASTICcoord: 34..181

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:1185909..1186652 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8678.t1Gchil8678.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000088_pilon 1185909..1186652 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8678.t1 ID=Gchil8678.t1|Name=Gchil8678.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=248bp
MSAAEGEEDNPDENVMQGPSQAPSKAGISTVGLSEPETAFIEACYNADVE
KIESMLNDGISADTCDVNGRTALHFCAGNGLPTLCEKLLEKGATINKQDV
LGFTPLHMATGYVKVDTARMLIKNSADANITSSAGKLAVEIAEEMLEKTP
AKRFFVANRNHDRLKELVQLLDESTELEEGEEEEEDKEQSGKKTTVNENG
EITEETENAKFVVRVKAKGEGSASATPAVKVDDVKVTIKIKEGGKKT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR036770Ankyrin_rpt-contain_sf
IPR030300CPSRP43