Gchil8678.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8678.t1
Unique NameGchil8678.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length248
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:1185909..1186652 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005708118.1
PFAMsAnk,Ank_2
Max annot lvl2759|Eukaryota
Evalue4.84e-08
EggNOG OGsCOG0666@1|root,KOG0504@2759|Eukaryota
Descriptionprotein ubiquitination
COG categoryI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8678Gchil8678Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 1185909..1186652 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8678.t1.stop1Gchil8678.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 1185909..1185911 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8678.t1.CDS1Gchil8678.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 1185909..1186652 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8678.t1.exon1Gchil8678.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 1185909..1186652 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8678.t1.start1Gchil8678.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 1186650..1186652 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8678.t1Gchil8678.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 1185909..1186652 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8678.t1 ID=Gchil8678.t1|Name=Gchil8678.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=248bp
MSAAEGEEDNPDENVMQGPSQAPSKAGISTVGLSEPETAFIEACYNADVE
KIESMLNDGISADTCDVNGRTALHFCAGNGLPTLCEKLLEKGATINKQDV
LGFTPLHMATGYVKVDTARMLIKNSADANITSSAGKLAVEIAEEMLEKTP
AKRFFVANRNHDRLKELVQLLDESTELEEGEEEEEDKEQSGKKTTVNENG
EITEETENAKFVVRVKAKGEGSASATPAVKVDDVKVTIKIKEGGKKT*
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spliced messenger RNA

>Gchil8678.t1 ID=Gchil8678.t1|Name=Gchil8678.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=744bp|location=Sequence derived from alignment at tig00000088_pilon:1185909..1186652- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGCAGCAGAAGGAGAAGAGGATAATCCTGATGAAAACGTCATGCA
GGGGCCATCCCAGGCGCCATCAAAGGCGGGCATATCCACTGTGGGTCTCT
CAGAGCCGGAGACAGCGTTCATAGAGGCGTGCTACAATGCGGACGTGGAA
AAGATTGAAAGCATGTTAAACGACGGTATATCTGCGGATACTTGTGACGT
GAACGGACGAACGGCTCTTCACTTTTGCGCTGGAAATGGTTTGCCAACGC
TTTGTGAGAAACTTTTGGAGAAGGGTGCGACGATTAACAAGCAGGATGTG
TTAGGATTCACGCCGTTGCACATGGCTACTGGCTATGTGAAGGTTGACAC
GGCAAGGATGTTGATCAAAAACAGTGCGGATGCGAACATAACGAGCTCTG
CTGGAAAGCTTGCTGTGGAGATTGCGGAGGAAATGCTGGAAAAAACGCCG
GCAAAGAGGTTTTTTGTGGCGAACCGCAATCACGACAGACTAAAGGAATT
AGTGCAGTTATTGGACGAGTCTACTGAACTTGAAGAAGGAGAGGAAGAGG
AAGAAGACAAAGAGCAGAGCGGTAAAAAGACCACGGTGAATGAGAATGGA
GAGATCACTGAAGAAACTGAAAATGCAAAATTTGTAGTGCGAGTGAAAGC
AAAGGGGGAGGGGTCAGCAAGCGCAACACCAGCTGTAAAAGTAGACGATG
TTAAAGTGACGATCAAGATTAAAGAAGGAGGGAAAAAGACATAA
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protein sequence of Gchil8678.t1

>Gchil8678.t1 ID=Gchil8678.t1|Name=Gchil8678.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=248bp
MSAAEGEEDNPDENVMQGPSQAPSKAGISTVGLSEPETAFIEACYNADVE
KIESMLNDGISADTCDVNGRTALHFCAGNGLPTLCEKLLEKGATINKQDV
LGFTPLHMATGYVKVDTARMLIKNSADANITSSAGKLAVEIAEEMLEKTP
AKRFFVANRNHDRLKELVQLLDESTELEEGEEEEEDKEQSGKKTTVNENG
EITEETENAKFVVRVKAKGEGSASATPAVKVDDVKVTIKIKEGGKKT*
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mRNA from alignment at tig00000088_pilon:1185909..1186652-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8678.t1 ID=Gchil8678.t1|Name=Gchil8678.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=744bp|location=Sequence derived from alignment at tig00000088_pilon:1185909..1186652- (Gracilaria chilensis NLEC103_M9 male)
ATGTCAGCAGCAGAAGGAGAAGAGGATAATCCTGATGAAAACGTCATGCA
GGGGCCATCCCAGGCGCCATCAAAGGCGGGCATATCCACTGTGGGTCTCT
CAGAGCCGGAGACAGCGTTCATAGAGGCGTGCTACAATGCGGACGTGGAA
AAGATTGAAAGCATGTTAAACGACGGTATATCTGCGGATACTTGTGACGT
GAACGGACGAACGGCTCTTCACTTTTGCGCTGGAAATGGTTTGCCAACGC
TTTGTGAGAAACTTTTGGAGAAGGGTGCGACGATTAACAAGCAGGATGTG
TTAGGATTCACGCCGTTGCACATGGCTACTGGCTATGTGAAGGTTGACAC
GGCAAGGATGTTGATCAAAAACAGTGCGGATGCGAACATAACGAGCTCTG
CTGGAAAGCTTGCTGTGGAGATTGCGGAGGAAATGCTGGAAAAAACGCCG
GCAAAGAGGTTTTTTGTGGCGAACCGCAATCACGACAGACTAAAGGAATT
AGTGCAGTTATTGGACGAGTCTACTGAACTTGAAGAAGGAGAGGAAGAGG
AAGAAGACAAAGAGCAGAGCGGTAAAAAGACCACGGTGAATGAGAATGGA
GAGATCACTGAAGAAACTGAAAATGCAAAATTTGTAGTGCGAGTGAAAGC
AAAGGGGGAGGGGTCAGCAAGCGCAACACCAGCTGTAAAAGTAGACGATG
TTAAAGTGACGATCAAGATTAAAGAAGGAGGGAAAAAGACATAA
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Coding sequence (CDS) from alignment at tig00000088_pilon:1185909..1186652-

>Gchil8678.t1 ID=Gchil8678.t1|Name=Gchil8678.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=744bp|location=Sequence derived from alignment at tig00000088_pilon:1185909..1186652- (Gracilaria chilensis NLEC103_M9 male)
ATGTCAGCAGCAGAAGGAGAAGAGGATAATCCTGATGAAAACGTCATGCA
GGGGCCATCCCAGGCGCCATCAAAGGCGGGCATATCCACTGTGGGTCTCT
CAGAGCCGGAGACAGCGTTCATAGAGGCGTGCTACAATGCGGACGTGGAA
AAGATTGAAAGCATGTTAAACGACGGTATATCTGCGGATACTTGTGACGT
GAACGGACGAACGGCTCTTCACTTTTGCGCTGGAAATGGTTTGCCAACGC
TTTGTGAGAAACTTTTGGAGAAGGGTGCGACGATTAACAAGCAGGATGTG
TTAGGATTCACGCCGTTGCACATGGCTACTGGCTATGTGAAGGTTGACAC
GGCAAGGATGTTGATCAAAAACAGTGCGGATGCGAACATAACGAGCTCTG
CTGGAAAGCTTGCTGTGGAGATTGCGGAGGAAATGCTGGAAAAAACGCCG
GCAAAGAGGTTTTTTGTGGCGAACCGCAATCACGACAGACTAAAGGAATT
AGTGCAGTTATTGGACGAGTCTACTGAACTTGAAGAAGGAGAGGAAGAGG
AAGAAGACAAAGAGCAGAGCGGTAAAAAGACCACGGTGAATGAGAATGGA
GAGATCACTGAAGAAACTGAAAATGCAAAATTTGTAGTGCGAGTGAAAGC
AAAGGGGGAGGGGTCAGCAAGCGCAACACCAGCTGTAAAAGTAGACGATG
TTAAAGTGACGATCAAGATTAAAGAAGGAGGGAAAAAGACATAA
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