Gchil8604.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8604.t1
Unique NameGchil8604.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length182
Homology
BLAST of Gchil8604.t1 vs. uniprot
Match: A0A2V3ING2_9FLOR (Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ING2_9FLOR)

HSP 1 Score: 176 bits (446), Expect = 5.720e-54
Identity = 85/113 (75.22%), Postives = 99/113 (87.61%), Query Frame = 0
Query:    1 MFAFASATPLPARVATHAAVCRRSPKMSYDMDGSGRGSLGDLRIKSSAVEKDSRSFKVTYVQPSETRLFTFRELQNVYTTKVVPFSSWYAEQQRIQKMGGRILNVELSSGGQM 113
            M AFA+++P+ AR  T  A+CRR+P+M YDMDGSG GSL D RIKSSAVEKD R+FKVTYV PSE+RL+TFRELQNVYTTKVVPFSSWYAEQQRIQKMGG+I+ V+L +GGQM
Sbjct:    1 MVAFAASSPVLARAPTQTAICRRAPRMGYDMDGSGPGSLADRRIKSSAVEKDRRAFKVTYVLPSESRLYTFRELQNVYTTKVVPFSSWYAEQQRIQKMGGKIMKVQLCAGGQM 113          
BLAST of Gchil8604.t1 vs. uniprot
Match: R7QFE8_CHOCR (Phycobilisome core linker polypeptide (Lc), allophycocyanin-associated (ApcC) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFE8_CHOCR)

HSP 1 Score: 150 bits (378), Expect = 5.650e-44
Identity = 75/88 (85.23%), Postives = 81/88 (92.05%), Query Frame = 0
Query:   27 MSYDMDGS-GRGSLGDLRIKSSAVEKDSRSFKVTYVQPSETRLFTFRELQNVYTTKVVPFSSWYAEQQRIQKMGGRILNVELSSGGQM 113
            M+YDMDGS G GSL  LRI+SSAVEKD RSFKVT+V PSE+RLFTFRELQNVYTTK+VPFSSWYAEQQRIQKMGG+IL VELSSGGQM
Sbjct:    1 MAYDMDGSSGLGSLNQLRIRSSAVEKDRRSFKVTFVLPSESRLFTFRELQNVYTTKIVPFSSWYAEQQRIQKMGGKILKVELSSGGQM 88          
BLAST of Gchil8604.t1 vs. uniprot
Match: A0A5J4YVZ2_PORPP (Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core n=2 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YVZ2_PORPP)

HSP 1 Score: 142 bits (358), Expect = 1.960e-40
Identity = 69/87 (79.31%), Postives = 78/87 (89.66%), Query Frame = 0
Query:   27 MSYDMDGSGRGSLGDLRIKSSAVEKDSRSFKVTYVQPSETRLFTFRELQNVYTTKVVPFSSWYAEQQRIQKMGGRILNVELSSGGQM 113
            M+YDMDG+G GSL    IKSSAVEKDSR FKVT+V PS++RL+TFRELQNVYTTK+VPFSSWYAEQQRIQKMGG+IL VEL +GGQM
Sbjct:   40 MAYDMDGTGAGSLEPRGIKSSAVEKDSRCFKVTFVLPSQSRLYTFRELQNVYTTKMVPFSSWYAEQQRIQKMGGKILKVELVAGGQM 126          
BLAST of Gchil8604.t1 vs. uniprot
Match: A0A7J7IM35_9RHOD (CpcD-like domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IM35_9RHOD)

HSP 1 Score: 118 bits (295), Expect = 5.700e-31
Identity = 57/82 (69.51%), Postives = 66/82 (80.49%), Query Frame = 0
Query:   29 YDMDGSGRGSLGDLRIKSSAVEKDSRSFKVTYVQPSETRLFTFRELQNVYTTKVVPFSSWYAEQQRIQKMGGRILNVELSSG 110
            YDMDGSG G+L   RIKSS V  D R FKVT+V PSE+R+++ RELQNV TTK+VPF+SWY EQQRI KMGGRI  VEL+SG
Sbjct:   37 YDMDGSGSGNLNPRRIKSSGVSNDRRMFKVTFVLPSESRVYSGRELQNVATTKMVPFTSWYREQQRIMKMGGRITKVELASG 118          
BLAST of Gchil8604.t1 vs. uniprot
Match: A0A7S3A684_9RHOD (Hypothetical protein n=3 Tax=Eukaryota TaxID=2759 RepID=A0A7S3A684_9RHOD)

HSP 1 Score: 116 bits (291), Expect = 1.810e-30
Identity = 62/94 (65.96%), Postives = 73/94 (77.66%), Query Frame = 0
Query:   18 AAVCRRSPKMSYDMDGSGR-GSLGDLRIKSSAVEKDSRSFKVTYVQPSETRLFTFRELQNVYTTKVVPFSSWYAEQQRIQKMGGRILNVELSSG 110
            AA C  + KMSYDM+G    GSLG+ +IKSSAV  D+RSF+VTY  PS +R  TFRELQ +Y TKV+PFSSWYAEQQRIQK GG I+ VEL+SG
Sbjct:   19 AATC--AVKMSYDMNGDNTTGSLGNRKIKSSAVSGDTRSFRVTYCLPSLSRAETFRELQMIYQTKVIPFSSWYAEQQRIQKGGGTIIKVELASG 110          
BLAST of Gchil8604.t1 vs. uniprot
Match: M2Y574_GALSU (Phycobilisome core linker protein (ApcC) n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2Y574_GALSU)

HSP 1 Score: 113 bits (283), Expect = 5.060e-29
Identity = 53/83 (63.86%), Postives = 66/83 (79.52%), Query Frame = 0
Query:   28 SYDMDGSGRGSLGDLRIKSSAVEKDSRSFKVTYVQPSETRLFTFRELQNVYTTKVVPFSSWYAEQQRIQKMGGRILNVELSSG 110
            S+ M+GS  G+LG ++ K+S V  D R FK+TY QPS++R F+ RELQNVYTTK+VPFSSWYAEQQRI KMGG+I  VEL+ G
Sbjct:   47 SFGMNGSSLGTLGGVKYKNSGVANDGRCFKITYCQPSQSRGFSGRELQNVYTTKLVPFSSWYAEQQRIMKMGGKIFKVELAVG 129          
BLAST of Gchil8604.t1 vs. uniprot
Match: M1UUN7_CYAM1 (Phycocyanin-associated rod linker protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1UUN7_CYAM1)

HSP 1 Score: 113 bits (282), Expect = 5.210e-29
Identity = 55/82 (67.07%), Postives = 66/82 (80.49%), Query Frame = 0
Query:   29 YDMDGSGRGSLGDLRIKSSAVEKDSRSFKVTYVQPSETRLFTFRELQNVYTTKVVPFSSWYAEQQRIQKMGGRILNVELSSG 110
            YDM+GS  G+LG  RIKSS V  D R FKV+YV PS++R+ + RELQNV TTK+VPF+SWY+EQQRI KMGGRI  VEL+SG
Sbjct:   37 YDMNGSSAGNLGPRRIKSSGVANDRRMFKVSYVLPSQSRVDSGRELQNVATTKMVPFTSWYSEQQRIMKMGGRITKVELASG 118          
BLAST of Gchil8604.t1 vs. uniprot
Match: A0A7S1P3W1_9ALVE (Hypothetical protein (Fragment) n=1 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A7S1P3W1_9ALVE)

HSP 1 Score: 82.0 bits (201), Expect = 5.520e-17
Identity = 44/77 (57.14%), Postives = 52/77 (67.53%), Query Frame = 0
Query:   14 VATHAAVCRRSPKMS-YDMDGSGR-GSLGDLRIKSSAVEKDSRSFKVTYVQPSETRLFTFRELQNVYTTKVVPFSSW 88
            V T  A C     M+ YDM+G    GSLG  ++KSSA   DSR FKVTYV PS +R  TFRELQN+Y TK++PFSSW
Sbjct:   40 VQTRTAKCTARVTMNVYDMNGDNTTGSLGQRKVKSSAPPNDSRCFKVTYVLPSLSRAETFRELQNIYQTKLIPFSSW 116          
BLAST of Gchil8604.t1 vs. uniprot
Match: A0A8J7KYC8_9NOST (Phycobilisome linker polypeptide n=1 Tax=Atlanticothrix silvestris CENA357 TaxID=1725252 RepID=A0A8J7KYC8_9NOST)

HSP 1 Score: 79.3 bits (194), Expect = 1.710e-16
Identity = 36/60 (60.00%), Postives = 49/60 (81.67%), Query Frame = 0
Query:   53 SRSFKVTYVQPSETRLFTFRELQNVYTTKVVPFSSWYAEQQRIQKMGGRILNVELSSGGQ 112
            +R FK+T   PS++R+ T RELQN Y TK+VP+ SW++EQQRIQKMGG+I+ VEL++G Q
Sbjct:    2 ARLFKITACVPSQSRIRTQRELQNTYFTKLVPYDSWFSEQQRIQKMGGKIVKVELATGRQ 61          
BLAST of Gchil8604.t1 vs. uniprot
Match: V5NYA3_9CYAN (Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core n=3 Tax=Cyanobacteria TaxID=1117 RepID=V5NYA3_9CYAN)

HSP 1 Score: 79.0 bits (193), Expect = 2.350e-16
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 0
Query:   54 RSFKVTYVQPSETRLFTFRELQNVYTTKVVPFSSWYAEQQRIQKMGGRILNVELSSGGQ 112
            RSFK+T   PS+TR+ T RELQN Y TK+V F +W+AEQQRI KMGG+I+ VEL++G Q
Sbjct:    2 RSFKITACVPSQTRIRTQRELQNTYFTKLVSFDNWFAEQQRIMKMGGKIVKVELATGKQ 60          
The following BLAST results are available for this feature:
BLAST of Gchil8604.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ING2_9FLOR5.720e-5475.22Phycobilisome 7.8 kDa linker polypeptide, allophyc... [more]
R7QFE8_CHOCR5.650e-4485.23Phycobilisome core linker polypeptide (Lc), alloph... [more]
A0A5J4YVZ2_PORPP1.960e-4079.31Phycobilisome 7.8 kDa linker polypeptide, allophyc... [more]
A0A7J7IM35_9RHOD5.700e-3169.51CpcD-like domain-containing protein n=1 Tax=Cyanid... [more]
A0A7S3A684_9RHOD1.810e-3065.96Hypothetical protein n=3 Tax=Eukaryota TaxID=2759 ... [more]
M2Y574_GALSU5.060e-2963.86Phycobilisome core linker protein (ApcC) n=1 Tax=G... [more]
M1UUN7_CYAM15.210e-2967.07Phycocyanin-associated rod linker protein n=2 Tax=... [more]
A0A7S1P3W1_9ALVE5.520e-1757.14Hypothetical protein (Fragment) n=1 Tax=Vitrella b... [more]
A0A8J7KYC8_9NOST1.710e-1660.00Phycobilisome linker polypeptide n=1 Tax=Atlantico... [more]
V5NYA3_9CYAN2.350e-1662.71Phycobilisome 7.8 kDa linker polypeptide, allophyc... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008213CpcD-like domainSMARTSM01094CpcD_2coord: 53..108
e-value: 1.3E-12
score: 57.9
IPR008213CpcD-like domainPFAMPF01383CpcDcoord: 53..106
e-value: 1.2E-10
score: 41.5
IPR008213CpcD-like domainPROSITEPS51441CPCD_LIKEcoord: 53..108
score: 11.261456
IPR011064Allophycocyanin linker chainGENE3D3.30.1490.170Allophycocyanin linker chain (domain)coord: 53..107
e-value: 4.0E-28
score: 98.8
IPR011064Allophycocyanin linker chainSUPERFAMILY54580Allophycocyanin linker chain (domain)coord: 53..114
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..181
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:582257..583547 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8604.t1Gchil8604.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000088_pilon 582257..583547 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8604.t1 ID=Gchil8604.t1|Name=Gchil8604.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=182bp
MFAFASATPLPARVATHAAVCRRSPKMSYDMDGSGRGSLGDLRIKSSAVE
KDSRSFKVTYVQPSETRLFTFRELQNVYTTKVVPFSSWYAEQQRIQKMGG
RILNVELSSGGQMSQMLSVVQIPTELPRGYDVTVTKHNTGKIILLKRHVP
NRAVIADPADSSNRQQHRIAINHPMNHVTSF*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008213CpcD-like_dom
IPR011064Allophyco_linker_chain