Gchil8604.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil8604.t1
Unique NameGchil8604.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length182
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:582257..583547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog211165.AJLN01000116_gene3099
Preferred nameapcC
PFAMsCpcD
Max annot lvl1117|Cyanobacteria
KEGG koko:K02094
KEGG Pathwayko00196,ko01100,map00196,map01100
GOsGO:0005575,GO:0005622,GO:0005623,GO:0009579,GO:0016020,GO:0034357,GO:0042651,GO:0044424,GO:0044436,GO:0044464
Evalue8.27e-17
EggNOG OGs2CHHF@1|root,32S63@2|Bacteria,1G7RG@1117|Cyanobacteria,1JMCR@1189|Stigonemataceae
DescriptionCpcD/allophycocyanin linker domain
COG categoryS
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8604Gchil8604Gracilaria chilensis NLEC103_M9 malegenetig00000088_pilon 582257..583547 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8604.t1Gchil8604.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000088_pilon 582257..583547 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8604.t1.stop1Gchil8604.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000088_pilon 582257..582259 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8604.t1.CDS1Gchil8604.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 582257..582461 -
Gchil8604.t1.CDS2Gchil8604.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000088_pilon 583207..583547 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8604.t1.exon1Gchil8604.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 582257..582461 -
Gchil8604.t1.exon2Gchil8604.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000088_pilon 583207..583547 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8604.t1.intron1Gchil8604.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000088_pilon 582462..583206 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil8604.t1.start1Gchil8604.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000088_pilon 583545..583547 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil8604.t1 ID=Gchil8604.t1|Name=Gchil8604.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=182bp
MFAFASATPLPARVATHAAVCRRSPKMSYDMDGSGRGSLGDLRIKSSAVE
KDSRSFKVTYVQPSETRLFTFRELQNVYTTKVVPFSSWYAEQQRIQKMGG
RILNVELSSGGQMSQMLSVVQIPTELPRGYDVTVTKHNTGKIILLKRHVP
NRAVIADPADSSNRQQHRIAINHPMNHVTSF*
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spliced messenger RNA

>Gchil8604.t1 ID=Gchil8604.t1|Name=Gchil8604.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=546bp|location=Sequence derived from alignment at tig00000088_pilon:582257..583547- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGCTTTTGCATCAGCGACGCCTCTACCGGCCCGCGTCGCCACACA
CGCCGCCGTCTGTCGCCGCTCGCCGAAGATGTCGTATGACATGGATGGAA
GCGGAAGGGGTTCATTGGGCGACCTTCGCATTAAGAGCTCAGCCGTTGAG
AAGGATTCTCGTTCCTTCAAGGTCACCTATGTGCAACCGAGCGAAACCAG
ACTCTTTACATTCCGCGAGTTGCAAAATGTTTACACTACCAAGGTTGTGC
CGTTTTCATCTTGGTATGCTGAACAGCAGCGTATCCAAAAGATGGGCGGT
CGTATTCTGAATGTTGAGCTCTCTTCGGGCGGCCAGATGAGTCAAATGCT
CTCTGTTGTGCAAATACCAACTGAGCTACCGAGAGGGTACGATGTTACCG
TAACCAAACATAATACTGGCAAAATTATACTTTTGAAGCGTCATGTTCCC
AATAGGGCCGTGATTGCGGACCCCGCCGACTCTTCGAACAGACAACAACA
CAGGATCGCAATAAATCATCCAATGAACCATGTGACGAGTTTCTAA
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protein sequence of Gchil8604.t1

>Gchil8604.t1 ID=Gchil8604.t1|Name=Gchil8604.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=182bp
MFAFASATPLPARVATHAAVCRRSPKMSYDMDGSGRGSLGDLRIKSSAVE
KDSRSFKVTYVQPSETRLFTFRELQNVYTTKVVPFSSWYAEQQRIQKMGG
RILNVELSSGGQMSQMLSVVQIPTELPRGYDVTVTKHNTGKIILLKRHVP
NRAVIADPADSSNRQQHRIAINHPMNHVTSF*
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mRNA from alignment at tig00000088_pilon:582257..583547-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil8604.t1 ID=Gchil8604.t1|Name=Gchil8604.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1291bp|location=Sequence derived from alignment at tig00000088_pilon:582257..583547- (Gracilaria chilensis NLEC103_M9 male)
ATGTTCGCTTTTGCATCAGCGACGCCTCTACCGGCCCGCGTCGCCACACA
CGCCGCCGTCTGTCGCCGCTCGCCGAAGATGTCGTATGACATGGATGGAA
GCGGAAGGGGTTCATTGGGCGACCTTCGCATTAAGAGCTCAGCCGTTGAG
AAGGATTCTCGTTCCTTCAAGGTCACCTATGTGCAACCGAGCGAAACCAG
ACTCTTTACATTCCGCGAGTTGCAAAATGTTTACACTACCAAGGTTGTGC
CGTTTTCATCTTGGTATGCTGAACAGCAGCGTATCCAAAAGATGGGCGGT
CGTATTCTGAATGTTGAGCTCTCTTCGGGCGGCCAGATGAGGTCAGTGGG
AAACACCTAAATGCAGTTTTGGTGTTTTGATGAACGTGATCATTGCTCGC
TTTTTGTTGGCGGGCTCACAAGTAAAACCTCGAGTTGAGTTCAGAACAGT
TTTTTTTCAATGTCAAGTGTAAACAAGTTGCGTTTTGTCTTCATGCCGAT
TTATCGCAGGATGCACGGTATACTTGTTACAATTACGTCCCGCGCATGCT
GTGTTAGGGCTAGGGTCTGCGAAGGGCCAGAAGTTTGGCAGGTCGCAATG
CCTACCGGCGAAAGATAGAAATCATGGGCCCATCGTGGCCGGAAAGATAA
GAGCCGTGCTCTTACCTTAGAAGGTGTCGCTTTTTCTTTGTTCCATATGT
ACACTGACTGCCGGTTAACTTGCATTTGGCCCTGAAATCACGGTCTAGTC
TCACCATGTCAGAGAACGAGACCTCTGTTCGTTTCACACGCACGCGAGGC
AAAAAATATATGTATGGAGCGCAGAATTTCACGCCTTTTTACACCTCGAC
AAACGCCTGACAAGGGAAAGATTCGTAAAACTCAAAAACAGAATGTCGCA
GCTCTGAATCAGCATATTCTCCCGACGATGGAGACGAGGTTACTGTGAAC
CAGAGGCGCTGACAGGGAGAAAAGCAGTGATGGGAGGAGGAAAAATCATG
CAATCAGCTGGCTGTGAATAACCAATACTATCTCTCTCGGCCTAGAATCG
ACCTAGGGACATTTTGATGGATGCAATCCACTACAGTCAAATGCTCTCTG
TTGTGCAAATACCAACTGAGCTACCGAGAGGGTACGATGTTACCGTAACC
AAACATAATACTGGCAAAATTATACTTTTGAAGCGTCATGTTCCCAATAG
GGCCGTGATTGCGGACCCCGCCGACTCTTCGAACAGACAACAACACAGGA
TCGCAATAAATCATCCAATGAACCATGTGACGAGTTTCTAA
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Coding sequence (CDS) from alignment at tig00000088_pilon:582257..583547-

>Gchil8604.t1 ID=Gchil8604.t1|Name=Gchil8604.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=546bp|location=Sequence derived from alignment at tig00000088_pilon:582257..583547- (Gracilaria chilensis NLEC103_M9 male)
ATGTTCGCTTTTGCATCAGCGACGCCTCTACCGGCCCGCGTCGCCACACA
CGCCGCCGTCTGTCGCCGCTCGCCGAAGATGTCGTATGACATGGATGGAA
GCGGAAGGGGTTCATTGGGCGACCTTCGCATTAAGAGCTCAGCCGTTGAG
AAGGATTCTCGTTCCTTCAAGGTCACCTATGTGCAACCGAGCGAAACCAG
ACTCTTTACATTCCGCGAGTTGCAAAATGTTTACACTACCAAGGTTGTGC
CGTTTTCATCTTGGTATGCTGAACAGCAGCGTATCCAAAAGATGGGCGGT
CGTATTCTGAATGTTGAGCTCTCTTCGGGCGGCCAGATGAGTCAAATGCT
CTCTGTTGTGCAAATACCAACTGAGCTACCGAGAGGGTACGATGTTACCG
TAACCAAACATAATACTGGCAAAATTATACTTTTGAAGCGTCATGTTCCC
AATAGGGCCGTGATTGCGGACCCCGCCGACTCTTCGAACAGACAACAACA
CAGGATCGCAATAAATCATCCAATGAACCATGTGACGAGTTTCTAA
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