Gchil8628.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil8628.t1
Unique NameGchil8628.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length345
Homology
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BLAST of Gchil8628.t1 vs. uniprot
Match: R7QL25_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QL25_CHOCR)

HSP 1 Score: 415 bits (1067), Expect = 2.000e-142
Identity = 207/324 (63.89%), Postives = 246/324 (75.93%), Query Frame = 0 
Query:   22 LQDLPEDVQQQLISQLKQSDQAHLATSCQYFHQLVAPLLRRAFRCVSCQAPLFEPKELALYDAQTSSPRSTFGPSSNLAKRTFFQLVECSPQRDVAKFGMVLDQRRGAANFHVLRHLMQTVYKDGRFPLPQQLQCVQALRCAQCGVFVGFRHGDGNAV---RDFVHHDFVEMVDSKARLMTLDGHYLQPPEGIVNCANPQCRNVLFERDDMLPWSHVLASSRLTDMNAYLEWDHSWAGAATAGQPAFFVKRLRDGSVSVRNVRAEHLRQGNMVVGDVHCSQCQSHIGWKLLSEVAEGG--MLHNYDQIGRYGIIRSAVAPTEPR 340
            +Q LPEDVQ  L+S + Q+D AHLATSC  FH L +PLL R FRCV+C+APLF+P EL+L D  T   ++TFGPSS L +R FFQL +  P    A  GMVLD RRGAANFHVLRHL QTVY++ RFPLPQ+LQ V+ALRCA+C VFVGFR  D +      DFVHHDFVE+VD + R++TL G  L  PEG V CA   CR VLF+RDD+LPWSHVL+SSRLTDM+AYLEWDHSWAG+AT  QPAFFVKRLR  +  +RNVR E LRQG M VGDVHC+ C + IGWK ++E+ E    +LHNYDQ+GRYGIIR++VAP EPR
Sbjct:   16 IQHLPEDVQTSLLSLMSQADIAHLATSCTTFHSLASPLLFRQFRCVTCRAPLFQPSELSLQDHPTRGRKATFGPSSRLPRRAFFQLRD-HPPATPADRGMVLDARRGAANFHVLRHLAQTVYRNERFPLPQELQAVRALRCAKCEVFVGFRLEDPSGTDNTHDFVHHDFVELVDGQDRIVTLSGQVLPEPEGTVRCAQEGCRRVLFQRDDVLPWSHVLSSSRLTDMDAYLEWDHSWAGSATESQPAFFVKRLRSAAGVMRNVRPERLRQGQMEVGDVHCAGCDAQIGWKFVAELPEEETELLHNYDQVGRYGIIRNSVAPAEPR 338
The following BLAST results are available for this feature:
BLAST of Gchil8628.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R7QL25_CHOCR2.000e-14263.89Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
IPR001810F-box domainPROSITEPS50181FBOXcoord: 19..67
score: 9.417986

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000088_piloncontigtig00000088_pilon:774984..776018 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil8628.t1Gchil8628.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000088_pilon 774984..776018 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil8628.t1 ID=Gchil8628.t1|Name=Gchil8628.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=345bp
MQDHFHSNSSALHSEQSHAASLQDLPEDVQQQLISQLKQSDQAHLATSCQ
YFHQLVAPLLRRAFRCVSCQAPLFEPKELALYDAQTSSPRSTFGPSSNLA
KRTFFQLVECSPQRDVAKFGMVLDQRRGAANFHVLRHLMQTVYKDGRFPL
PQQLQCVQALRCAQCGVFVGFRHGDGNAVRDFVHHDFVEMVDSKARLMTL
DGHYLQPPEGIVNCANPQCRNVLFERDDMLPWSHVLASSRLTDMNAYLEW
DHSWAGAATAGQPAFFVKRLRDGSVSVRNVRAEHLRQGNMVVGDVHCSQC
QSHIGWKLLSEVAEGGMLHNYDQIGRYGIIRSAVAPTEPRNLHI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001810F-box_dom