Gchil538.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil538.t1
Unique NameGchil538.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length686
Homology
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BLAST of Gchil538.t1 vs. uniprot
Match: A0A2V3IPR1_9FLOR (C2H2-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPR1_9FLOR)

HSP 1 Score: 202 bits (513), Expect = 3.420e-52
Identity = 90/158 (56.96%), Postives = 116/158 (73.42%), Query Frame = 0 
Query:  461 MKPIPWDPYVKHFNPLLVGKHGERVPQSFLDAQMSMSEWLEMRRAVFDKGDDVDQLAFKVLAEMLLSPTLGVREDALSHMNAAIKQMRNAHYYSAETGAYMSADAVPPKLWKREPRFVQGDEHWMSVQSEQDKALHLICENLYYMFDQGEDFEAVSAK 618
            +KP+ WDPY+  FNP LVGK G+RVP +FLDA  SMSEW EMR  VF+KGDDVD+LAFK++ E+LLSPTLG++  AL H++ AIK+   AHYYS  TG Y     +  K+WKRE RF++GDE WM  QS++DKA+HL CEN++Y F+QG      S +
Sbjct:  529 VKPVAWDPYLSMFNPALVGKEGKRVPDAFLDAVPSMSEWREMRHCVFEKGDDVDKLAFKLMQEILLSPTLGIQASALDHLDRAIKKHGAAHYYSKATGGYSYRKDLADKMWKRERRFIEGDEKWMKEQSDEDKAMHLFCENVHYAFEQGRTLRMCSRR 686
The following BLAST results are available for this feature:
BLAST of Gchil538.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IPR1_9FLOR3.420e-5256.96C2H2-type domain-containing protein n=1 Tax=Gracil... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003604Matrin/U1-C-like, C2H2-type zinc fingerSMARTSM00451ZnF_U1_5coord: 198..232
e-value: 2.1E-5
score: 34.0
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 186..239
e-value: 4.6E-6
score: 28.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 243..270
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 329..351
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 160..193
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 371..398
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 231..436
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 289..320
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 192..234

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000060_piloncontigtig00000060_pilon:784947..787004 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil538.t1Gchil538.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000060_pilon 784947..787004 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil538.t1 ID=Gchil538.t1|Name=Gchil538.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=686bp
MRTPDLTALRAARVFFATASNNQLINYFSHLSIDHPIRRLRFARLRFAAF
ASPFALHARDAESAVGLRRYISRRRPSSMASSRAAPDADHVGLLPLPPDV
EMPDINWEDYDHPPVAPAAPFLSTVPATSTSQPSASASASASATASASAP
AAPTTLAGGAAGAGAGAPRDVNGRTGRYFNAQPQWNKRKHTKSPKKPATP
IYCELCSVTVYCTKSMDIHIKGRAHRTKLQQQRLQAANQELDRPYQQRDR
RTLAEMGITLDRDPPDRRRDASPPPPSPSAASASVAPAPLASPVPPAAAK
PPTAPPPAPSPAPPVAAPAAFAAPTSPRVPNSAPAPAPAPAPAPAPKPAL
ALAPRPKSALALASRPKPALALAPSPRPKPKPALALAPVPPPASASTSAA
PPLSPRLRSGESISPRKASVPPTATTPLTPALAAPVPASAPAPAPATAPA
SSAARLMEPVMKPIPWDPYVKHFNPLLVGKHGERVPQSFLDAQMSMSEWL
EMRRAVFDKGDDVDQLAFKVLAEMLLSPTLGVREDALSHMNAAIKQMRNA
HYYSAETGAYMSADAVPPKLWKREPRFVQGDEHWMSVQSEQDKALHLICE
NLYYMFDQGEDFEAVSAKGPLALLPFRGGVTGFRSSSGRTERDGARYGGV
DVSVERDELFQQIHDFSIQQKEKIMLQHQHQQREQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003604Matrin/U1-like-C_Znf_C2H2
IPR036236Znf_C2H2_sf