Gchil538.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil538.t1
Unique NameGchil538.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length686
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000060_piloncontigtig00000060_pilon:784947..787004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil538Gchil538Gracilaria chilensis NLEC103_M9 malegenetig00000060_pilon 784947..787004 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil538.t1.stop1Gchil538.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000060_pilon 784947..784949 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil538.t1.CDS1Gchil538.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000060_pilon 784947..787004 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil538.t1.exon1Gchil538.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000060_pilon 784947..787004 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil538.t1.start1Gchil538.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000060_pilon 787002..787004 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil538.t1Gchil538.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000060_pilon 784947..787004 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil538.t1 ID=Gchil538.t1|Name=Gchil538.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=686bp
MRTPDLTALRAARVFFATASNNQLINYFSHLSIDHPIRRLRFARLRFAAF
ASPFALHARDAESAVGLRRYISRRRPSSMASSRAAPDADHVGLLPLPPDV
EMPDINWEDYDHPPVAPAAPFLSTVPATSTSQPSASASASASATASASAP
AAPTTLAGGAAGAGAGAPRDVNGRTGRYFNAQPQWNKRKHTKSPKKPATP
IYCELCSVTVYCTKSMDIHIKGRAHRTKLQQQRLQAANQELDRPYQQRDR
RTLAEMGITLDRDPPDRRRDASPPPPSPSAASASVAPAPLASPVPPAAAK
PPTAPPPAPSPAPPVAAPAAFAAPTSPRVPNSAPAPAPAPAPAPAPKPAL
ALAPRPKSALALASRPKPALALAPSPRPKPKPALALAPVPPPASASTSAA
PPLSPRLRSGESISPRKASVPPTATTPLTPALAAPVPASAPAPAPATAPA
SSAARLMEPVMKPIPWDPYVKHFNPLLVGKHGERVPQSFLDAQMSMSEWL
EMRRAVFDKGDDVDQLAFKVLAEMLLSPTLGVREDALSHMNAAIKQMRNA
HYYSAETGAYMSADAVPPKLWKREPRFVQGDEHWMSVQSEQDKALHLICE
NLYYMFDQGEDFEAVSAKGPLALLPFRGGVTGFRSSSGRTERDGARYGGV
DVSVERDELFQQIHDFSIQQKEKIMLQHQHQQREQ*
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spliced messenger RNA

>Gchil538.t1 ID=Gchil538.t1|Name=Gchil538.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2058bp|location=Sequence derived from alignment at tig00000060_pilon:784947..787004- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGTACGCCAGATCTAACGGCGCTAAGAGCGGCGCGTGTCTTTTTTGC
GACAGCATCCAACAACCAATTAATCAACTACTTTTCACACCTGTCAATTG
ACCACCCAATTCGCCGCTTGCGCTTCGCGCGCTTGCGCTTCGCCGCTTTC
GCTTCGCCGTTTGCGCTCCACGCGCGCGACGCCGAAAGCGCCGTCGGGTT
ACGACGGTACATATCGCGTCGCCGTCCGTCGAGCATGGCGTCGTCGCGCG
CCGCCCCCGACGCCGACCATGTCGGCCTGCTCCCGCTTCCGCCCGACGTT
GAGATGCCCGACATCAACTGGGAGGACTACGACCATCCCCCCGTTGCGCC
CGCTGCCCCCTTCCTTTCGACCGTCCCCGCCACCTCTACCTCGCAGCCCT
CCGCCTCCGCCTCGGCCTCGGCCTCCGCCACCGCCTCGGCCTCCGCTCCT
GCCGCTCCTACCACGCTGGCAGGCGGCGCCGCGGGCGCGGGCGCGGGCGC
GCCGCGCGACGTCAACGGCCGCACGGGACGATACTTCAACGCGCAGCCGC
AGTGGAACAAACGTAAGCATACAAAGTCGCCGAAGAAGCCGGCCACGCCC
ATCTATTGCGAGCTGTGTAGCGTCACCGTGTATTGCACAAAGTCCATGGA
CATTCACATCAAGGGCCGCGCCCACCGCACCAAGCTGCAGCAGCAGCGTC
TGCAAGCCGCCAACCAGGAGCTCGACCGTCCGTACCAACAACGCGACCGC
CGCACCCTCGCTGAGATGGGCATCACCCTCGACCGCGATCCTCCCGACCG
CCGCCGAGATGCGTCGCCACCGCCGCCCTCGCCGTCCGCCGCATCCGCAT
CCGTCGCACCTGCACCACTTGCATCACCTGTGCCACCTGCAGCTGCGAAA
CCACCGACCGCCCCGCCGCCCGCCCCGTCGCCCGCTCCGCCAGTCGCTGC
GCCTGCCGCCTTCGCCGCCCCCACGTCGCCGCGAGTGCCAAACAGCGCGC
CTGCGCCCGCGCCCGCGCCTGCGCCCGCGCCCGCGCCCAAGCCCGCGCTC
GCGCTCGCACCCAGGCCCAAGTCCGCGCTCGCGCTCGCGTCCAGGCCCAA
GCCTGCGCTCGCGCTCGCGCCCTCGCCCAGGCCCAAGCCCAAGCCCGCGC
TCGCGCTCGCTCCTGTACCCCCACCCGCCTCCGCCTCCACGTCTGCTGCG
CCGCCGCTCTCGCCGCGCTTGCGCAGCGGCGAGTCTATCTCGCCGCGCAA
GGCCAGTGTGCCGCCGACGGCGACGACCCCCCTAACCCCAGCGCTAGCAG
CCCCAGTGCCAGCCTCAGCGCCAGCGCCTGCGCCAGCGACAGCGCCTGCG
TCAAGCGCGGCGCGACTGATGGAGCCGGTAATGAAGCCCATCCCGTGGGA
CCCCTACGTTAAGCACTTTAACCCGTTGCTGGTGGGAAAGCACGGCGAGC
GCGTGCCACAGTCCTTTCTGGACGCGCAAATGTCCATGTCGGAGTGGCTC
GAGATGCGGCGCGCTGTGTTCGACAAGGGCGACGATGTGGACCAGCTGGC
CTTCAAGGTTCTGGCGGAGATGCTGCTGTCGCCCACGCTGGGCGTGCGCG
AGGACGCGCTGTCGCACATGAACGCCGCCATCAAGCAAATGCGCAACGCG
CACTACTACAGCGCCGAGACGGGCGCATACATGTCGGCCGACGCGGTGCC
GCCCAAGCTGTGGAAGCGCGAGCCGCGCTTTGTGCAAGGCGACGAGCACT
GGATGAGCGTGCAGAGCGAACAAGACAAGGCGCTGCACCTCATCTGCGAG
AACCTGTACTACATGTTCGACCAGGGCGAGGACTTTGAGGCGGTGAGCGC
CAAGGGGCCGTTAGCGCTGCTGCCGTTTCGCGGTGGCGTGACCGGCTTTC
GCAGCAGCAGCGGTAGAACGGAGCGCGACGGTGCGCGATATGGCGGCGTA
GACGTTAGCGTGGAGAGAGACGAGCTGTTCCAGCAGATCCACGATTTTAG
CATCCAGCAGAAGGAGAAGATTATGCTGCAGCACCAGCACCAGCAACGAG
AACAGTAA
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protein sequence of Gchil538.t1

>Gchil538.t1 ID=Gchil538.t1|Name=Gchil538.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=686bp
MRTPDLTALRAARVFFATASNNQLINYFSHLSIDHPIRRLRFARLRFAAF
ASPFALHARDAESAVGLRRYISRRRPSSMASSRAAPDADHVGLLPLPPDV
EMPDINWEDYDHPPVAPAAPFLSTVPATSTSQPSASASASASATASASAP
AAPTTLAGGAAGAGAGAPRDVNGRTGRYFNAQPQWNKRKHTKSPKKPATP
IYCELCSVTVYCTKSMDIHIKGRAHRTKLQQQRLQAANQELDRPYQQRDR
RTLAEMGITLDRDPPDRRRDASPPPPSPSAASASVAPAPLASPVPPAAAK
PPTAPPPAPSPAPPVAAPAAFAAPTSPRVPNSAPAPAPAPAPAPAPKPAL
ALAPRPKSALALASRPKPALALAPSPRPKPKPALALAPVPPPASASTSAA
PPLSPRLRSGESISPRKASVPPTATTPLTPALAAPVPASAPAPAPATAPA
SSAARLMEPVMKPIPWDPYVKHFNPLLVGKHGERVPQSFLDAQMSMSEWL
EMRRAVFDKGDDVDQLAFKVLAEMLLSPTLGVREDALSHMNAAIKQMRNA
HYYSAETGAYMSADAVPPKLWKREPRFVQGDEHWMSVQSEQDKALHLICE
NLYYMFDQGEDFEAVSAKGPLALLPFRGGVTGFRSSSGRTERDGARYGGV
DVSVERDELFQQIHDFSIQQKEKIMLQHQHQQREQ*
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mRNA from alignment at tig00000060_pilon:784947..787004-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil538.t1 ID=Gchil538.t1|Name=Gchil538.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2058bp|location=Sequence derived from alignment at tig00000060_pilon:784947..787004- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTACGCCAGATCTAACGGCGCTAAGAGCGGCGCGTGTCTTTTTTGC
GACAGCATCCAACAACCAATTAATCAACTACTTTTCACACCTGTCAATTG
ACCACCCAATTCGCCGCTTGCGCTTCGCGCGCTTGCGCTTCGCCGCTTTC
GCTTCGCCGTTTGCGCTCCACGCGCGCGACGCCGAAAGCGCCGTCGGGTT
ACGACGGTACATATCGCGTCGCCGTCCGTCGAGCATGGCGTCGTCGCGCG
CCGCCCCCGACGCCGACCATGTCGGCCTGCTCCCGCTTCCGCCCGACGTT
GAGATGCCCGACATCAACTGGGAGGACTACGACCATCCCCCCGTTGCGCC
CGCTGCCCCCTTCCTTTCGACCGTCCCCGCCACCTCTACCTCGCAGCCCT
CCGCCTCCGCCTCGGCCTCGGCCTCCGCCACCGCCTCGGCCTCCGCTCCT
GCCGCTCCTACCACGCTGGCAGGCGGCGCCGCGGGCGCGGGCGCGGGCGC
GCCGCGCGACGTCAACGGCCGCACGGGACGATACTTCAACGCGCAGCCGC
AGTGGAACAAACGTAAGCATACAAAGTCGCCGAAGAAGCCGGCCACGCCC
ATCTATTGCGAGCTGTGTAGCGTCACCGTGTATTGCACAAAGTCCATGGA
CATTCACATCAAGGGCCGCGCCCACCGCACCAAGCTGCAGCAGCAGCGTC
TGCAAGCCGCCAACCAGGAGCTCGACCGTCCGTACCAACAACGCGACCGC
CGCACCCTCGCTGAGATGGGCATCACCCTCGACCGCGATCCTCCCGACCG
CCGCCGAGATGCGTCGCCACCGCCGCCCTCGCCGTCCGCCGCATCCGCAT
CCGTCGCACCTGCACCACTTGCATCACCTGTGCCACCTGCAGCTGCGAAA
CCACCGACCGCCCCGCCGCCCGCCCCGTCGCCCGCTCCGCCAGTCGCTGC
GCCTGCCGCCTTCGCCGCCCCCACGTCGCCGCGAGTGCCAAACAGCGCGC
CTGCGCCCGCGCCCGCGCCTGCGCCCGCGCCCGCGCCCAAGCCCGCGCTC
GCGCTCGCACCCAGGCCCAAGTCCGCGCTCGCGCTCGCGTCCAGGCCCAA
GCCTGCGCTCGCGCTCGCGCCCTCGCCCAGGCCCAAGCCCAAGCCCGCGC
TCGCGCTCGCTCCTGTACCCCCACCCGCCTCCGCCTCCACGTCTGCTGCG
CCGCCGCTCTCGCCGCGCTTGCGCAGCGGCGAGTCTATCTCGCCGCGCAA
GGCCAGTGTGCCGCCGACGGCGACGACCCCCCTAACCCCAGCGCTAGCAG
CCCCAGTGCCAGCCTCAGCGCCAGCGCCTGCGCCAGCGACAGCGCCTGCG
TCAAGCGCGGCGCGACTGATGGAGCCGGTAATGAAGCCCATCCCGTGGGA
CCCCTACGTTAAGCACTTTAACCCGTTGCTGGTGGGAAAGCACGGCGAGC
GCGTGCCACAGTCCTTTCTGGACGCGCAAATGTCCATGTCGGAGTGGCTC
GAGATGCGGCGCGCTGTGTTCGACAAGGGCGACGATGTGGACCAGCTGGC
CTTCAAGGTTCTGGCGGAGATGCTGCTGTCGCCCACGCTGGGCGTGCGCG
AGGACGCGCTGTCGCACATGAACGCCGCCATCAAGCAAATGCGCAACGCG
CACTACTACAGCGCCGAGACGGGCGCATACATGTCGGCCGACGCGGTGCC
GCCCAAGCTGTGGAAGCGCGAGCCGCGCTTTGTGCAAGGCGACGAGCACT
GGATGAGCGTGCAGAGCGAACAAGACAAGGCGCTGCACCTCATCTGCGAG
AACCTGTACTACATGTTCGACCAGGGCGAGGACTTTGAGGCGGTGAGCGC
CAAGGGGCCGTTAGCGCTGCTGCCGTTTCGCGGTGGCGTGACCGGCTTTC
GCAGCAGCAGCGGTAGAACGGAGCGCGACGGTGCGCGATATGGCGGCGTA
GACGTTAGCGTGGAGAGAGACGAGCTGTTCCAGCAGATCCACGATTTTAG
CATCCAGCAGAAGGAGAAGATTATGCTGCAGCACCAGCACCAGCAACGAG
AACAGTAA
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Coding sequence (CDS) from alignment at tig00000060_pilon:784947..787004-

>Gchil538.t1 ID=Gchil538.t1|Name=Gchil538.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2058bp|location=Sequence derived from alignment at tig00000060_pilon:784947..787004- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTACGCCAGATCTAACGGCGCTAAGAGCGGCGCGTGTCTTTTTTGC
GACAGCATCCAACAACCAATTAATCAACTACTTTTCACACCTGTCAATTG
ACCACCCAATTCGCCGCTTGCGCTTCGCGCGCTTGCGCTTCGCCGCTTTC
GCTTCGCCGTTTGCGCTCCACGCGCGCGACGCCGAAAGCGCCGTCGGGTT
ACGACGGTACATATCGCGTCGCCGTCCGTCGAGCATGGCGTCGTCGCGCG
CCGCCCCCGACGCCGACCATGTCGGCCTGCTCCCGCTTCCGCCCGACGTT
GAGATGCCCGACATCAACTGGGAGGACTACGACCATCCCCCCGTTGCGCC
CGCTGCCCCCTTCCTTTCGACCGTCCCCGCCACCTCTACCTCGCAGCCCT
CCGCCTCCGCCTCGGCCTCGGCCTCCGCCACCGCCTCGGCCTCCGCTCCT
GCCGCTCCTACCACGCTGGCAGGCGGCGCCGCGGGCGCGGGCGCGGGCGC
GCCGCGCGACGTCAACGGCCGCACGGGACGATACTTCAACGCGCAGCCGC
AGTGGAACAAACGTAAGCATACAAAGTCGCCGAAGAAGCCGGCCACGCCC
ATCTATTGCGAGCTGTGTAGCGTCACCGTGTATTGCACAAAGTCCATGGA
CATTCACATCAAGGGCCGCGCCCACCGCACCAAGCTGCAGCAGCAGCGTC
TGCAAGCCGCCAACCAGGAGCTCGACCGTCCGTACCAACAACGCGACCGC
CGCACCCTCGCTGAGATGGGCATCACCCTCGACCGCGATCCTCCCGACCG
CCGCCGAGATGCGTCGCCACCGCCGCCCTCGCCGTCCGCCGCATCCGCAT
CCGTCGCACCTGCACCACTTGCATCACCTGTGCCACCTGCAGCTGCGAAA
CCACCGACCGCCCCGCCGCCCGCCCCGTCGCCCGCTCCGCCAGTCGCTGC
GCCTGCCGCCTTCGCCGCCCCCACGTCGCCGCGAGTGCCAAACAGCGCGC
CTGCGCCCGCGCCCGCGCCTGCGCCCGCGCCCGCGCCCAAGCCCGCGCTC
GCGCTCGCACCCAGGCCCAAGTCCGCGCTCGCGCTCGCGTCCAGGCCCAA
GCCTGCGCTCGCGCTCGCGCCCTCGCCCAGGCCCAAGCCCAAGCCCGCGC
TCGCGCTCGCTCCTGTACCCCCACCCGCCTCCGCCTCCACGTCTGCTGCG
CCGCCGCTCTCGCCGCGCTTGCGCAGCGGCGAGTCTATCTCGCCGCGCAA
GGCCAGTGTGCCGCCGACGGCGACGACCCCCCTAACCCCAGCGCTAGCAG
CCCCAGTGCCAGCCTCAGCGCCAGCGCCTGCGCCAGCGACAGCGCCTGCG
TCAAGCGCGGCGCGACTGATGGAGCCGGTAATGAAGCCCATCCCGTGGGA
CCCCTACGTTAAGCACTTTAACCCGTTGCTGGTGGGAAAGCACGGCGAGC
GCGTGCCACAGTCCTTTCTGGACGCGCAAATGTCCATGTCGGAGTGGCTC
GAGATGCGGCGCGCTGTGTTCGACAAGGGCGACGATGTGGACCAGCTGGC
CTTCAAGGTTCTGGCGGAGATGCTGCTGTCGCCCACGCTGGGCGTGCGCG
AGGACGCGCTGTCGCACATGAACGCCGCCATCAAGCAAATGCGCAACGCG
CACTACTACAGCGCCGAGACGGGCGCATACATGTCGGCCGACGCGGTGCC
GCCCAAGCTGTGGAAGCGCGAGCCGCGCTTTGTGCAAGGCGACGAGCACT
GGATGAGCGTGCAGAGCGAACAAGACAAGGCGCTGCACCTCATCTGCGAG
AACCTGTACTACATGTTCGACCAGGGCGAGGACTTTGAGGCGGTGAGCGC
CAAGGGGCCGTTAGCGCTGCTGCCGTTTCGCGGTGGCGTGACCGGCTTTC
GCAGCAGCAGCGGTAGAACGGAGCGCGACGGTGCGCGATATGGCGGCGTA
GACGTTAGCGTGGAGAGAGACGAGCTGTTCCAGCAGATCCACGATTTTAG
CATCCAGCAGAAGGAGAAGATTATGCTGCAGCACCAGCACCAGCAACGAG
AACAGTAA
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