Gchil7703.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7703.t1
Unique NameGchil7703.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length189
Homology
BLAST of Gchil7703.t1 vs. uniprot
Match: D2Y6R5_9POAL (Gag-pol polyprotein (Fragment) n=1 Tax=Cenchrus setaceus TaxID=48735 RepID=D2Y6R5_9POAL)

HSP 1 Score: 110 bits (275), Expect = 3.870e-26
Identity = 58/157 (36.94%), Postives = 92/157 (58.60%), Query Frame = 0
Query:    1 MEDLVR-GMSFIWEEDQKNSFSSLDTALTSAPVLVNARANEEFVMSTDAPKYAVESTLEQDGHLVAYLSHRLSNPEKNWDTVEQDLLTFMIALEDWSLYLRSRRFVLYIYYEPLRYLRSNARLSRRQARWVDVIQEYKFEIRHVLEALNVVPDALSR 156
            M +L + G+ F WE  Q+N+F+ L   LT AP+L     N+ F +  DA    +   L Q+G  VAY S +LS P  N+ T +++L   +  LE W  YL  + FV++  +E L+++RS  +L+RR A+WV+ I+ + + I+H     N++ DALSR
Sbjct:   69 MNELTKKGVPFSWEGKQENAFNMLKDKLTHAPLLQLPYFNKTFELECDASGIGLRGVLLQEGKPVAYFSEKLSGPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKENIIADALSR 225          
BLAST of Gchil7703.t1 vs. uniprot
Match: UPI000809D0BA (uncharacterized protein LOC108327205 n=1 Tax=Phaseolus angularis TaxID=3914 RepID=UPI000809D0BA)

HSP 1 Score: 111 bits (277), Expect = 5.630e-25
Identity = 55/157 (35.03%), Postives = 97/157 (61.78%), Query Frame = 0
Query:    1 MEDLVR-GMSFIWEEDQKNSFSSLDTALTSAPVLVNARANEEFVMSTDAPKYAVESTLEQDGHLVAYLSHRLSNPEKNWDTVEQDLLTFMIALEDWSLYLRSRRFVLYIYYEPLRYLRSNARLSRRQARWVDVIQEYKFEIRHVLEALNVVPDALSR 156
            + +LV+  M F+W + Q+ SF +L   LT AP+L+    ++ F +  DA    + + L Q GH VAY S +L  P  N+ T +++L   + AL+ W  YL +R F+++  +E L+Y++  A+L++R A+WV+ ++++ + I+H   + NVV +ALSR
Sbjct:  416 LNELVKKDMPFLWGDKQELSFETLKHKLTHAPILILPDFSKAFELECDASGVGIGAVLIQGGHPVAYFSEKLRGPTLNYPTYDKELYALIRALKTWEHYLVTREFIIHTDHESLKYIKGQAKLNKRHAKWVECLEQFPYVIKHKKGSTNVVANALSR 572          
BLAST of Gchil7703.t1 vs. uniprot
Match: Q10IG2_ORYSJ (Retrotransposon protein, putative, Ty3-gypsy subclass n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q10IG2_ORYSJ)

HSP 1 Score: 111 bits (277), Expect = 5.630e-25
Identity = 57/151 (37.75%), Postives = 89/151 (58.94%), Query Frame = 0
Query:    6 RGMSFIWEEDQKNSFSSLDTALTSAPVLVNARANEEFVMSTDAPKYAVESTLEQDGHLVAYLSHRLSNPEKNWDTVEQDLLTFMIALEDWSLYLRSRRFVLYIYYEPLRYLRSNARLSRRQARWVDVIQEYKFEIRHVLEALNVVPDALSR 156
            R ++F W   Q+N+F +L   LT AP+L     N+ F +  DA    +   L Q+G  VAY S +LS P  N+ T +++L   +  LE W  YL  + FV++  +E L+++RS A+L+RR A+WV+ I+ + + I+H     NV+ DALSR
Sbjct:  319 RNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKENVIADALSR 469          
BLAST of Gchil7703.t1 vs. uniprot
Match: UPI0006473A97 (uncharacterized protein LOC105914754 n=1 Tax=Setaria italica TaxID=4555 RepID=UPI0006473A97)

HSP 1 Score: 110 bits (274), Expect = 1.500e-24
Identity = 57/151 (37.75%), Postives = 89/151 (58.94%), Query Frame = 0
Query:    6 RGMSFIWEEDQKNSFSSLDTALTSAPVLVNARANEEFVMSTDAPKYAVESTLEQDGHLVAYLSHRLSNPEKNWDTVEQDLLTFMIALEDWSLYLRSRRFVLYIYYEPLRYLRSNARLSRRQARWVDVIQEYKFEIRHVLEALNVVPDALSR 156
            +G++F W    K++F +L   LT AP+L      + F +  DA    +   L Q+G  VAY S +LS P  N+ T +++LL  +  LE W  YL  + FV++  +E L+++RS A+L+RR ARWV+ I+ + + I+H     NV+ DALSR
Sbjct:  735 KGVTFTWAAAHKSAFDTLKDKLTHAPLLQLPDFTKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELLALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHARWVEFIESFPYVIKHKKGKENVIADALSR 885          
BLAST of Gchil7703.t1 vs. uniprot
Match: Q7XWN9_ORYSJ (OSJNBa0032B23.3 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XWN9_ORYSJ)

HSP 1 Score: 108 bits (271), Expect = 3.730e-24
Identity = 56/151 (37.09%), Postives = 88/151 (58.28%), Query Frame = 0
Query:    6 RGMSFIWEEDQKNSFSSLDTALTSAPVLVNARANEEFVMSTDAPKYAVESTLEQDGHLVAYLSHRLSNPEKNWDTVEQDLLTFMIALEDWSLYLRSRRFVLYIYYEPLRYLRSNARLSRRQARWVDVIQEYKFEIRHVLEALNVVPDALSR 156
            R ++F W   Q+N+F +L   LT AP+L     N+   +  DA    +   L Q+G  VAY S +LS P  N+ T +++L   +  LE W  YL  + FV++  +E L+++RS A+L+RR A+WV+ I+ + + I+H     NV+ DALSR
Sbjct:  639 RNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTLELECDASGIGLGGVLLQEGKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKENVIADALSR 789          
BLAST of Gchil7703.t1 vs. uniprot
Match: Q6UUM9_ORYSJ (Putative gag-pol polyprotein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q6UUM9_ORYSJ)

HSP 1 Score: 107 bits (268), Expect = 9.710e-24
Identity = 55/151 (36.42%), Postives = 88/151 (58.28%), Query Frame = 0
Query:    6 RGMSFIWEEDQKNSFSSLDTALTSAPVLVNARANEEFVMSTDAPKYAVESTLEQDGHLVAYLSHRLSNPEKNWDTVEQDLLTFMIALEDWSLYLRSRRFVLYIYYEPLRYLRSNARLSRRQARWVDVIQEYKFEIRHVLEALNVVPDALSR 156
            +G+ F W   Q+N+F  L   LT AP+L     N+ F +  DA    +   L Q+G LVAY S +LS P  N+ T +++L   +  LE W  YL  + FV++  +E L+++RS  +L+RR A+WV+ I+ + + I+H     N++ +ALSR
Sbjct:  957 KGVPFTWGTSQENAFHMLKHKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKLVAYFSEKLSGPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKENIIANALSR 1107          
BLAST of Gchil7703.t1 vs. uniprot
Match: C5NNY3_ORYSI (Putative unclassified retrotransposon protein n=2 Tax=Oryza sativa TaxID=4530 RepID=C5NNY3_ORYSI)

HSP 1 Score: 107 bits (267), Expect = 1.220e-23
Identity = 55/151 (36.42%), Postives = 87/151 (57.62%), Query Frame = 0
Query:    6 RGMSFIWEEDQKNSFSSLDTALTSAPVLVNARANEEFVMSTDAPKYAVESTLEQDGHLVAYLSHRLSNPEKNWDTVEQDLLTFMIALEDWSLYLRSRRFVLYIYYEPLRYLRSNARLSRRQARWVDVIQEYKFEIRHVLEALNVVPDALSR 156
            +G+ F W   Q+N+F  L   LT AP+L     N+ F +  DA    +   L Q+G  VAY S +LS P  N+ T +++L   +  LE W  YL  + FV++  +E L+++RS  +L+RR A+WV+ I+ + + I+H     N++ DALSR
Sbjct:  342 KGVPFTWGTSQENAFHMLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKENIIADALSR 492          
BLAST of Gchil7703.t1 vs. uniprot
Match: Q6UUN7_ORYSJ (Putative gag-pol polyprotein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q6UUN7_ORYSJ)

HSP 1 Score: 107 bits (267), Expect = 1.290e-23
Identity = 55/151 (36.42%), Postives = 87/151 (57.62%), Query Frame = 0
Query:    6 RGMSFIWEEDQKNSFSSLDTALTSAPVLVNARANEEFVMSTDAPKYAVESTLEQDGHLVAYLSHRLSNPEKNWDTVEQDLLTFMIALEDWSLYLRSRRFVLYIYYEPLRYLRSNARLSRRQARWVDVIQEYKFEIRHVLEALNVVPDALSR 156
            +G+ F W   Q+N+F  L   LT AP+L     N+ F +  DA    +   L Q+G  VAY S +LS P  N+ T +++L   +  LE W  YL  + FV++  +E L+++RS  +L+RR A+WV+ I+ + + I+H     N++ DALSR
Sbjct:  794 KGVPFTWGTSQENAFHMLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKENIIADALSR 944          
BLAST of Gchil7703.t1 vs. uniprot
Match: Q94I07_ORYSJ (RNA-directed DNA polymerase n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q94I07_ORYSJ)

HSP 1 Score: 107 bits (267), Expect = 1.360e-23
Identity = 55/151 (36.42%), Postives = 87/151 (57.62%), Query Frame = 0
Query:    6 RGMSFIWEEDQKNSFSSLDTALTSAPVLVNARANEEFVMSTDAPKYAVESTLEQDGHLVAYLSHRLSNPEKNWDTVEQDLLTFMIALEDWSLYLRSRRFVLYIYYEPLRYLRSNARLSRRQARWVDVIQEYKFEIRHVLEALNVVPDALSR 156
            +G+ F W   Q+N+F  L   LT AP+L     N+ F +  DA    +   L Q+G  VAY S +LS P  N+ T +++L   +  LE W  YL  + FV++  +E L+++RS  +L+RR A+WV+ I+ + + I+H     N++ DALSR
Sbjct:  978 KGVPFTWGTSQENAFHMLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEGKPVAYFSEKLSGPVLNYSTYDKELYALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQGKLNRRHAKWVEFIESFPYVIKHKKGKENIIADALSR 1128          
BLAST of Gchil7703.t1 vs. uniprot
Match: Q7XWZ0_ORYSJ (OSJNBb0072N21.12 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q7XWZ0_ORYSJ)

HSP 1 Score: 106 bits (265), Expect = 2.390e-23
Identity = 55/151 (36.42%), Postives = 88/151 (58.28%), Query Frame = 0
Query:    6 RGMSFIWEEDQKNSFSSLDTALTSAPVLVNARANEEFVMSTDAPKYAVESTLEQDGHLVAYLSHRLSNPEKNWDTVEQDLLTFMIALEDWSLYLRSRRFVLYIYYEPLRYLRSNARLSRRQARWVDVIQEYKFEIRHVLEALNVVPDALSR 156
            R ++F W   Q+N+F +L   LT AP+L     N+ F +  DA    +   L Q+   VAY S +LS P  N+ T +++L   +  LE W  YL  + FV++  +E L+++RS A+L+RR A+WV+ I+ + + I+H     NV+ +ALSR
Sbjct:  784 RNVTFTWAAAQRNAFDTLKDKLTHAPLLQLPDFNKTFELECDASGIGLGGVLLQEDKPVAYFSEKLSGPSLNYSTYDKELFALVRTLETWQHYLWPKEFVIHSDHESLKHIRSQAKLNRRHAKWVEFIESFPYVIKHKKGKENVIANALSR 934          
The following BLAST results are available for this feature:
BLAST of Gchil7703.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D2Y6R5_9POAL3.870e-2636.94Gag-pol polyprotein (Fragment) n=1 Tax=Cenchrus se... [more]
UPI000809D0BA5.630e-2535.03uncharacterized protein LOC108327205 n=1 Tax=Phase... [more]
Q10IG2_ORYSJ5.630e-2537.75Retrotransposon protein, putative, Ty3-gypsy subcl... [more]
UPI0006473A971.500e-2437.75uncharacterized protein LOC105914754 n=1 Tax=Setar... [more]
Q7XWN9_ORYSJ3.730e-2437.09OSJNBa0032B23.3 protein n=1 Tax=Oryza sativa subsp... [more]
Q6UUM9_ORYSJ9.710e-2436.42Putative gag-pol polyprotein n=1 Tax=Oryza sativa ... [more]
C5NNY3_ORYSI1.220e-2336.42Putative unclassified retrotransposon protein n=2 ... [more]
Q6UUN7_ORYSJ1.290e-2336.42Putative gag-pol polyprotein n=1 Tax=Oryza sativa ... [more]
Q94I07_ORYSJ1.360e-2336.42RNA-directed DNA polymerase n=2 Tax=Oryza sativa s... [more]
Q7XWZ0_ORYSJ2.390e-2336.42OSJNBb0072N21.12 protein n=1 Tax=Oryza sativa subs... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041577Reverse transcriptase/retrotransposon-derived protein, RNase H-like domainPFAMPF17919RT_RNaseH_2coord: 12..105
e-value: 1.4E-19
score: 70.0
NoneNo IPR availablePANTHERPTHR24559:SF360SUBFAMILY NOT NAMEDcoord: 9..157
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 9..157
NoneNo IPR availableCDDcd09274RNase_HI_RT_Ty3coord: 43..158
e-value: 1.17912E-33
score: 114.127
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 7..142

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025321_piloncontigtig00025321_pilon:427230..427796 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7703.t1Gchil7703.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00025321_pilon 427230..427796 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7703.t1 ID=Gchil7703.t1|Name=Gchil7703.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=189bp
MEDLVRGMSFIWEEDQKNSFSSLDTALTSAPVLVNARANEEFVMSTDAPK
YAVESTLEQDGHLVAYLSHRLSNPEKNWDTVEQDLLTFMIALEDWSLYLR
SRRFVLYIYYEPLRYLRSNARLSRRQARWVDVIQEYKFEIRHVLEALNVV
PDALSRCADHLPALRMMNLASQDMAKRVQEGCAEDDWM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR041577RT_RNaseH_2
IPR043502DNA/RNA_pol_sf