Gchil7703.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7703.t1
Unique NameGchil7703.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length189
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00025321_piloncontigtig00025321_pilon:427230..427796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3760.EMJ21583
PFAMsRVT_1,Retrotrans_gag,rve,zf-H2C2
Max annot lvl35493|Streptophyta
Evalue3.07e-24
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37M1D@33090|Viridiplantae,3GCV5@35493|Streptophyta
DescriptionDNA RNA polymerases superfamily protein
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7703Gchil7703Gracilaria chilensis NLEC103_M9 malegenetig00025321_pilon 427230..427796 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7703.t1.stop1Gchil7703.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00025321_pilon 427230..427232 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7703.t1.CDS1Gchil7703.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00025321_pilon 427230..427796 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7703.t1.exon1Gchil7703.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00025321_pilon 427230..427796 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7703.t1.start1Gchil7703.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00025321_pilon 427794..427796 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7703.t1Gchil7703.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00025321_pilon 427230..427796 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7703.t1 ID=Gchil7703.t1|Name=Gchil7703.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=189bp
MEDLVRGMSFIWEEDQKNSFSSLDTALTSAPVLVNARANEEFVMSTDAPK
YAVESTLEQDGHLVAYLSHRLSNPEKNWDTVEQDLLTFMIALEDWSLYLR
SRRFVLYIYYEPLRYLRSNARLSRRQARWVDVIQEYKFEIRHVLEALNVV
PDALSRCADHLPALRMMNLASQDMAKRVQEGCAEDDWM*
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spliced messenger RNA

>Gchil7703.t1 ID=Gchil7703.t1|Name=Gchil7703.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=567bp|location=Sequence derived from alignment at tig00025321_pilon:427230..427796- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGATCTTGTGCGAGGGATGTCTTTCATTTGGGAAGAGGATCAGAA
AAACTCCTTCTCTTCTTTAGATACCGCGTTAACCTCCGCTCCTGTGCTTG
TGAATGCAAGAGCCAATGAGGAATTCGTAATGTCGACGGATGCCCCCAAG
TATGCGGTAGAGTCAACGCTGGAGCAGGATGGGCATCTTGTAGCGTATTT
ATCCCACAGGCTGTCTAATCCAGAGAAAAATTGGGACACAGTAGAACAGG
ATTTGCTAACATTTATGATAGCATTGGAAGATTGGAGTTTGTATCTGAGA
AGTAGGAGGTTTGTCTTGTACATCTATTATGAACCCCTCAGATATCTTCG
ATCAAATGCAAGGCTTTCCAGACGTCAAGCAAGGTGGGTGGACGTTATCC
AAGAGTATAAATTTGAAATCCGACATGTCCTTGAAGCACTGAACGTGGTT
CCTGATGCGTTGAGCAGATGTGCGGATCACCTCCCCGCATTGCGAATGAT
GAACTTGGCGAGCCAAGACATGGCAAAGCGCGTGCAAGAAGGGTGCGCAG
AGGACGATTGGATGTAG
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protein sequence of Gchil7703.t1

>Gchil7703.t1 ID=Gchil7703.t1|Name=Gchil7703.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=189bp
MEDLVRGMSFIWEEDQKNSFSSLDTALTSAPVLVNARANEEFVMSTDAPK
YAVESTLEQDGHLVAYLSHRLSNPEKNWDTVEQDLLTFMIALEDWSLYLR
SRRFVLYIYYEPLRYLRSNARLSRRQARWVDVIQEYKFEIRHVLEALNVV
PDALSRCADHLPALRMMNLASQDMAKRVQEGCAEDDWM*
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mRNA from alignment at tig00025321_pilon:427230..427796-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7703.t1 ID=Gchil7703.t1|Name=Gchil7703.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=567bp|location=Sequence derived from alignment at tig00025321_pilon:427230..427796- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGATCTTGTGCGAGGGATGTCTTTCATTTGGGAAGAGGATCAGAA
AAACTCCTTCTCTTCTTTAGATACCGCGTTAACCTCCGCTCCTGTGCTTG
TGAATGCAAGAGCCAATGAGGAATTCGTAATGTCGACGGATGCCCCCAAG
TATGCGGTAGAGTCAACGCTGGAGCAGGATGGGCATCTTGTAGCGTATTT
ATCCCACAGGCTGTCTAATCCAGAGAAAAATTGGGACACAGTAGAACAGG
ATTTGCTAACATTTATGATAGCATTGGAAGATTGGAGTTTGTATCTGAGA
AGTAGGAGGTTTGTCTTGTACATCTATTATGAACCCCTCAGATATCTTCG
ATCAAATGCAAGGCTTTCCAGACGTCAAGCAAGGTGGGTGGACGTTATCC
AAGAGTATAAATTTGAAATCCGACATGTCCTTGAAGCACTGAACGTGGTT
CCTGATGCGTTGAGCAGATGTGCGGATCACCTCCCCGCATTGCGAATGAT
GAACTTGGCGAGCCAAGACATGGCAAAGCGCGTGCAAGAAGGGTGCGCAG
AGGACGATTGGATGTAG
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Coding sequence (CDS) from alignment at tig00025321_pilon:427230..427796-

>Gchil7703.t1 ID=Gchil7703.t1|Name=Gchil7703.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=567bp|location=Sequence derived from alignment at tig00025321_pilon:427230..427796- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGATCTTGTGCGAGGGATGTCTTTCATTTGGGAAGAGGATCAGAA
AAACTCCTTCTCTTCTTTAGATACCGCGTTAACCTCCGCTCCTGTGCTTG
TGAATGCAAGAGCCAATGAGGAATTCGTAATGTCGACGGATGCCCCCAAG
TATGCGGTAGAGTCAACGCTGGAGCAGGATGGGCATCTTGTAGCGTATTT
ATCCCACAGGCTGTCTAATCCAGAGAAAAATTGGGACACAGTAGAACAGG
ATTTGCTAACATTTATGATAGCATTGGAAGATTGGAGTTTGTATCTGAGA
AGTAGGAGGTTTGTCTTGTACATCTATTATGAACCCCTCAGATATCTTCG
ATCAAATGCAAGGCTTTCCAGACGTCAAGCAAGGTGGGTGGACGTTATCC
AAGAGTATAAATTTGAAATCCGACATGTCCTTGAAGCACTGAACGTGGTT
CCTGATGCGTTGAGCAGATGTGCGGATCACCTCCCCGCATTGCGAATGAT
GAACTTGGCGAGCCAAGACATGGCAAAGCGCGTGCAAGAAGGGTGCGCAG
AGGACGATTGGATGTAG
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