Gchil10021.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10021.t1
Unique NameGchil10021.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length154
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:419689..420246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10021Gchil10021Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 419689..420246 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10021.t1Gchil10021.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 419689..420246 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10021.t1.start1Gchil10021.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 419689..419691 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10021.t1.CDS1Gchil10021.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 419689..419907 +
Gchil10021.t1.CDS2Gchil10021.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 420004..420246 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10021.t1.exon1Gchil10021.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 419689..419907 +
Gchil10021.t1.exon2Gchil10021.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 420004..420246 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10021.t1.intron1Gchil10021.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 419908..420003 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10021.t1.stop1Gchil10021.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 420244..420246 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10021.t1 ID=Gchil10021.t1|Name=Gchil10021.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=154bp
MANGIVDNIPDQPFKVCLSNSSSHDVKLPKNTNVGIAPPAPQGVFTVAHT
DLGEVAFDEEGGCANASTTSKVSIGEENGQLRGRIIDLLEEFENMWSGHL
GQIKATQHRIELLPDSKPIYQQPYRAGPKAREVELKEVERMLQEGVIEPE
NLD*
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spliced messenger RNA

>Gchil10021.t1 ID=Gchil10021.t1|Name=Gchil10021.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=462bp|location=Sequence derived from alignment at tig00004442_pilon:419689..420246+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
atggccaacgggattgtcgacaacatcccagatcaaccctttaaggtttg
tctcagcaactccagcagtcatgacgtgaagttgccgaaaaataccaatg
ttggcatcgcacctccggcaccacaaggggtcttcacggtagctcacact
gatctcggagaggtcgccttcgatgaagaaggggggtgcgcaaatgcgtc
cacaacctcaaaggtatcgatcggtgaagaaaacggccaactgcggggcc
gtattatcgaccttctggaggaattcgaaaacatgtggtcaggccatctg
ggccaaattaaggccacacagcatcgcatcgagctcctccctgactcgaa
gccgatttatcagcaaccataccgtgcaggtccgaaggcgagagaagtag
aactcaaagaagtggagcgaatgctccaagaaggggtaattgaaccagaa
aacttagattag
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protein sequence of Gchil10021.t1

>Gchil10021.t1 ID=Gchil10021.t1|Name=Gchil10021.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=154bp
MANGIVDNIPDQPFKVCLSNSSSHDVKLPKNTNVGIAPPAPQGVFTVAHT
DLGEVAFDEEGGCANASTTSKVSIGEENGQLRGRIIDLLEEFENMWSGHL
GQIKATQHRIELLPDSKPIYQQPYRAGPKAREVELKEVERMLQEGVIEPE
NLD*
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mRNA from alignment at tig00004442_pilon:419689..420246+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10021.t1 ID=Gchil10021.t1|Name=Gchil10021.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=558bp|location=Sequence derived from alignment at tig00004442_pilon:419689..420246+ (Gracilaria chilensis NLEC103_M9 male)
atggccaacgggattgtcgacaacatcccagatcaaccctttaaggtttg
tctcagcaactccagcagtcatgacgtgaagttgccgaaaaataccaatg
ttggcatcgcacctccggcaccacaaggggtcttcacggtagctcacact
gatctcggagaggtcgccttcgatgaagaaggggggtgcgcaaatgcgtc
cacaacctcaaaggtatcggtaaataccaaattggaatcaaagctatcca
ataagacatcggtagacaaagaagagaaacctgaccccgataggtaatgg
caaggtacagtccagatcggtgaagaaaacggccaactgcggggccgtat
tatcgaccttctggaggaattcgaaaacatgtggtcaggccatctgggcc
aaattaaggccacacagcatcgcatcgagctcctccctgactcgaagccg
atttatcagcaaccataccgtgcaggtccgaaggcgagagaagtagaact
caaagaagtggagcgaatgctccaagaaggggtaattgaaccagaaaact
tagattag
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Coding sequence (CDS) from alignment at tig00004442_pilon:419689..420246+

>Gchil10021.t1 ID=Gchil10021.t1|Name=Gchil10021.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=462bp|location=Sequence derived from alignment at tig00004442_pilon:419689..420246+ (Gracilaria chilensis NLEC103_M9 male)
atggccaacgggattgtcgacaacatcccagatcaaccctttaaggtttg
tctcagcaactccagcagtcatgacgtgaagttgccgaaaaataccaatg
ttggcatcgcacctccggcaccacaaggggtcttcacggtagctcacact
gatctcggagaggtcgccttcgatgaagaaggggggtgcgcaaatgcgtc
cacaacctcaaaggtatcgatcggtgaagaaaacggccaactgcggggcc
gtattatcgaccttctggaggaattcgaaaacatgtggtcaggccatctg
ggccaaattaaggccacacagcatcgcatcgagctcctccctgactcgaa
gccgatttatcagcaaccataccgtgcaggtccgaaggcgagagaagtag
aactcaaagaagtggagcgaatgctccaagaaggggtaattgaaccagaa
aacttagattag
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