Gchil10021.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil10021.t1
Unique NameGchil10021.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length154
Homology
BLAST of Gchil10021.t1 vs. uniprot
Match: UPI001E1D3E38 (uncharacterized protein LOC123544752 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D3E38)

HSP 1 Score: 114 bits (286), Expect = 8.380e-27
Identity = 64/169 (37.87%), Postives = 96/169 (56.80%), Query Frame = 0
Query:    1 MANGIVDNIPDQPFKVCLSNSSSHDVKLPKNTNVGIAPPAPQGVFTVAHTD------LGEVAFDEEGGCANASTTSKVSIGEE--------------NGQLRGRIIDLLEEFENMWSGHLGQIKATQHRIELLPDSKPIYQQPYRAGPKAREVELKEVERMLQEGVIEP 149
            M+NGI D     PF V ++N    ++ LPKN  +G A P P  + ++   D      L ++  +EE        + +  + +E               G+ + +++ LLE + +MW G LG+IKAT+HRI+L+P SKP++  PYRAGPKARE+E +EVERML+  VIEP
Sbjct:  224 MSNGIQDICSRVPFLVKVANFGGDEIFLPKNAVIGYAFPHPTCIISLVGEDDTNVPDLPDLVEEEEHPLEANDASEETKVQDEAPKSWRDEVDLPTLQGEWKEKVMTLLERYSHMWDGSLGEIKATKHRIQLIPGSKPVHSHPYRAGPKAREMERQEVERMLKADVIEP 392          
BLAST of Gchil10021.t1 vs. uniprot
Match: R7QMC5_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QMC5_CHOCR)

HSP 1 Score: 102 bits (255), Expect = 1.550e-22
Identity = 49/78 (62.82%), Postives = 60/78 (76.92%), Query Frame = 0
Query:   72 VSIGEENGQLRGRIIDLLEEFENMWSGHLGQIKATQHRIELLPDSKPIYQQPYRAGPKAREVELKEVERMLQEGVIEP 149
            V IG E+  +R  I+D+L EF++MWSGHLG+I AT+H IEL P  KPIYQ PYRAGP ARE E KE++ ML+ GVIEP
Sbjct:  128 VHIGAEDSTVRSEIMDMLSEFKDMWSGHLGKIDATKHHIELKPGGKPIYQAPYRAGPIAREKEKKEIDGMLRAGVIEP 205          
BLAST of Gchil10021.t1 vs. uniprot
Match: R7QKK5_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QKK5_CHOCR)

HSP 1 Score: 97.8 bits (242), Expect = 8.530e-21
Identity = 45/64 (70.31%), Postives = 55/64 (85.94%), Query Frame = 0
Query:   86 IDLLEEFENMWSGHLGQIKATQHRIELLPDSKPIYQQPYRAGPKAREVELKEVERMLQEGVIEP 149
            +D+L EF++MWSGHLG+I AT+HRIEL P +KPIYQ PYRAGP ARE E KE++RML+ GVIEP
Sbjct:    1 MDMLSEFKDMWSGHLGKIDATKHRIELKPGAKPIYQAPYRAGPIAREKEKKEIDRMLRAGVIEP 64          
BLAST of Gchil10021.t1 vs. uniprot
Match: R7QIA9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIA9_CHOCR)

HSP 1 Score: 95.9 bits (237), Expect = 3.100e-20
Identity = 63/165 (38.18%), Postives = 90/165 (54.55%), Query Frame = 0
Query:    2 ANGIVDNIPDQPFKVCLSNSSSHDVKLPKNTNVGIAPPAPQGVFT-----VAHTDL-----GEVA--FDEEGGCA--NASTTSK---VSIGEENGQLRGRIIDLLEEFENMWSGHLGQIKATQHRIELLPDSKPIYQQPYRAGPKAREVELKEVERMLQEGVIEP 149
            +NG+V   P++ F+V ++N      +L K   +G   P P  V        A  DL      EV   FD++   A  N S TS    V I     + R +I  +L ++ +MWSG LG+IK T+H I+ +  ++PI Q PYRAGP ARE E+KEV+ ML+ GV+EP
Sbjct:   18 SNGVVQVEPNREFRVLVANFGIAPYRLVKGQTIGTLLPHPTAVIVSKVSVAAMLDLTDEEANEVQQDFDKDANWAVENTSMTSNPDDVDISHVPARHRDQIKAMLLKYSSMWSGELGEIKVTKHHIDTMTGTRPIAQNPYRAGPHAREAEMKEVDCMLRAGVLEP 182          
BLAST of Gchil10021.t1 vs. uniprot
Match: UPI001E1DB02D (uncharacterized protein LOC123543982 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DB02D)

HSP 1 Score: 92.8 bits (229), Expect = 4.360e-19
Identity = 41/78 (52.56%), Postives = 59/78 (75.64%), Query Frame = 0
Query:   72 VSIGEENGQLRGRIIDLLEEFENMWSGHLGQIKATQHRIELLPDSKPIYQQPYRAGPKAREVELKEVERMLQEGVIEP 149
            V +G   G+ R +I+D+L +  +MWSG LGQ+++T HRI+L+P  KP++ QPYRAGP+AR VE  E++RML+  VIEP
Sbjct:  325 VQLGHLQGEERAKILDMLAKHRSMWSGKLGQVQSTNHRIDLIPGQKPVHCQPYRAGPRARAVESAEIQRMLKAQVIEP 402          
BLAST of Gchil10021.t1 vs. uniprot
Match: R7QTY1_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QTY1_CHOCR)

HSP 1 Score: 80.9 bits (198), Expect = 6.000e-15
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 0
Query:   95 MWSGHLGQIKATQHRIELLPDSKPIYQQPYRAGPKAREVELKEVERMLQEGVIEP 149
            MW G LG+I  T HRIEL+P+++PI Q PYRAGPKAREVE  EV++ML+ GVIEP
Sbjct:    1 MWDGTLGEINTTVHRIELIPETRPIAQDPYRAGPKAREVEDAEVQKMLEAGVIEP 55          
BLAST of Gchil10021.t1 vs. uniprot
Match: R7QJR5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJR5_CHOCR)

HSP 1 Score: 77.4 bits (189), Expect = 9.240e-15
Identity = 36/73 (49.32%), Postives = 52/73 (71.23%), Query Frame = 0
Query:   80 QLRGRIIDLLEEFENMWSGHLGQIKATQHRIELLPDSKPIYQQPYRAGPKAREVELKEVERMLQEGVIEPENL 152
            +LR R   + +++  +W G LG+I  T HRIEL+P+++PI + PYRAGPK  E+E  EV++ML+ GVIEP  L
Sbjct:   48 RLRERFRRMSKKYSRVWDGTLGEIYTTVHRIELIPETRPIAKAPYRAGPKVCEIEDAEVQKMLEAGVIEPAQL 120          
BLAST of Gchil10021.t1 vs. uniprot
Match: R7QHJ7_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QHJ7_CHOCR)

HSP 1 Score: 72.8 bits (177), Expect = 8.590e-13
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 0
Query:   95 MWSGHLGQIKATQHRIELLPDSKPIYQQPYRAGPKAREVELKEVERMLQEGVIEP 149
            MW+G LG+I AT+HRIEL P ++ IY+ PY AGP ARE E  E++RML+ GVIEP
Sbjct:    1 MWTGQLGKIGATKHRIELEPGARQIYKAPYPAGPTAREKEKTEIDRMLRAGVIEP 55          
BLAST of Gchil10021.t1 vs. uniprot
Match: R7Q960_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q960_CHOCR)

HSP 1 Score: 68.9 bits (167), Expect = 9.920e-11
Identity = 31/69 (44.93%), Postives = 47/69 (68.12%), Query Frame = 0
Query:   77 ENGQLRGRIIDLLEEFENMWSGHLGQIKATQHRIELLPDSKPIYQQPYRAGPKAREVELKEVERMLQEG 145
            ++ ++RG ++++L +  ++WSG LG I+AT+HRI L P +KPI   PYR G   RE+  KEV +ML  G
Sbjct:   13 DDDKIRGHVLEMLRKHSSLWSGALGTIQATEHRIPLEPGTKPIRSMPYRNGLAMREMVAKEVNKMLNAG 81          
BLAST of Gchil10021.t1 vs. uniprot
Match: A0A3P8P9R1_ASTCA (Ribonuclease H n=1 Tax=Astatotilapia calliptera TaxID=8154 RepID=A0A3P8P9R1_ASTCA)

HSP 1 Score: 60.5 bits (145), Expect = 7.420e-8
Identity = 35/108 (32.41%), Postives = 61/108 (56.48%), Query Frame = 0
Query:   51 DLGEVAF---DEEGGCANASTTSKVSIGEENGQL------RGRIIDLLEEFENMWSGHLGQIKATQHRIELLPDSKPIYQQPYRAGPKAREVELKEVERMLQEGVIEP 149
            +LGE  F   D E G      T ++S+ ++ G+       R  +++LL  F +++ GHLG+    +H I +  D+KP+   PYR  P  +++  ++VE+MLQ+ +IEP
Sbjct:   29 ELGENGFVEADLECGTMTLQNTPQLSLHDKAGEANLDSEEREELLELLNSFGDLFDGHLGRTSLAEHVI-VTGDAKPVNLPPYRTSPAKKQIIDEQVEKMLQDNIIEP 135          
The following BLAST results are available for this feature:
BLAST of Gchil10021.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
UPI001E1D3E388.380e-2737.87uncharacterized protein LOC123544752 n=1 Tax=Merce... [more]
R7QMC5_CHOCR1.550e-2262.82Integrase catalytic domain-containing protein n=1 ... [more]
R7QKK5_CHOCR8.530e-2170.31Integrase catalytic domain-containing protein n=1 ... [more]
R7QIA9_CHOCR3.100e-2038.18Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
UPI001E1DB02D4.360e-1952.56uncharacterized protein LOC123543982 n=1 Tax=Merce... [more]
R7QTY1_CHOCR6.000e-1567.27Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QJR5_CHOCR9.240e-1549.32Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QHJ7_CHOCR8.590e-1361.82Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7Q960_CHOCR9.920e-1144.93Integrase catalytic domain-containing protein n=1 ... [more]
A0A3P8P9R1_ASTCA7.420e-832.41Ribonuclease H n=1 Tax=Astatotilapia calliptera Ta... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.10.10HIV Type 1 Reverse Transcriptase, subunit A, domain 1coord: 101..152
e-value: 4.9E-8
score: 35.0
IPR043502DNA/RNA polymerase superfamilySUPERFAMILY56672DNA/RNA polymerasescoord: 92..150

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:419689..420246 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10021.t1Gchil10021.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004442_pilon 419689..420246 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil10021.t1 ID=Gchil10021.t1|Name=Gchil10021.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=154bp
MANGIVDNIPDQPFKVCLSNSSSHDVKLPKNTNVGIAPPAPQGVFTVAHT
DLGEVAFDEEGGCANASTTSKVSIGEENGQLRGRIIDLLEEFENMWSGHL
GQIKATQHRIELLPDSKPIYQQPYRAGPKAREVELKEVERMLQEGVIEPE
NLD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR043502DNA/RNA_pol_sf