Gchil10043.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil10043.t1
Unique NameGchil10043.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length336
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004442_piloncontigtig00004442_pilon:550780..551967 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1230343.CANP01000043_gene3336
Max annot lvl118969|Legionellales
Evalue2.07e-41
EggNOG OGsCOG0451@1|root,COG0451@2|Bacteria,1MWVJ@1224|Proteobacteria,1RNDT@1236|Gammaproteobacteria,1JD8U@118969|Legionellales
DescriptionCOG0451 Nucleoside-diphosphate-sugar epimerases
COG categoryGM
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil10043Gchil10043Gracilaria chilensis NLEC103_M9 malegenetig00004442_pilon 550780..551967 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10043.t1Gchil10043.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004442_pilon 550780..551967 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10043.t1.start1Gchil10043.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004442_pilon 550780..550782 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10043.t1.CDS1Gchil10043.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 550780..550909 +
Gchil10043.t1.CDS2Gchil10043.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 551004..551254 +
Gchil10043.t1.CDS3Gchil10043.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004442_pilon 551341..551967 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10043.t1.exon1Gchil10043.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 550780..550909 +
Gchil10043.t1.exon2Gchil10043.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 551004..551254 +
Gchil10043.t1.exon3Gchil10043.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004442_pilon 551341..551967 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10043.t1.intron1Gchil10043.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 550910..551003 +
Gchil10043.t1.intron2Gchil10043.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004442_pilon 551255..551340 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil10043.t1.stop1Gchil10043.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004442_pilon 551965..551967 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil10043.t1 ID=Gchil10043.t1|Name=Gchil10043.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=336bp
MQPHSAFVLQPFMSDVRSHNGGAQKKIFVFGLGYAGIRIAHQLRKSGASI
AGITQSTVSSSSNHQDSMVVQSCEGTSKSLITAFVGYHLKNSTHVLSTVA
PDMFRSEDPILAQYADLLLKSDTIRWFGYLSSTSVYGDHSGALVDELSSS
LNPSAKGKLRLAVESSWIDLAKRAQVLACVFRVAGIYGPSRNALQTLLRN
PSVMNQTSDTLDMIVSRIHVVDLANAVTSAVYLEHPESEARSFSQVYYNI
GDDLPASRRAVFGYAAALLQGTKFPRHTTDSRVAAVSTRHSIRASKQVSN
AKMKNLLLPNLSFPTYREGLGAIAQELEISKRPLY*
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spliced messenger RNA

>Gchil10043.t1 ID=Gchil10043.t1|Name=Gchil10043.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1008bp|location=Sequence derived from alignment at tig00004442_pilon:550780..551967+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAACCGCATTCAGCCTTCGTGCTACAGCCGTTTATGTCTGACGTCCG
CTCTCACAATGGTGGAGCCCAGAAGAAGATTTTTGTGTTTGGACTTGGCT
ATGCTGGAATTAGGATTGCTCATCAGCTAAGGAAATCAGGGGCTTCTATA
GCTGGAATCACACAATCTACGGTAAGCTCTTCATCTAATCATCAAGATTC
AATGGTTGTTCAGTCTTGCGAAGGAACTTCTAAAAGTCTGATTACGGCTT
TTGTTGGGTATCATTTAAAGAATTCCACACACGTGCTTTCGACAGTTGCC
CCAGATATGTTCCGTTCTGAGGATCCAATTTTAGCACAATATGCTGATCT
TCTTCTCAAGTCCGACACCATAAGGTGGTTCGGATATCTCTCAAGCACCA
GCGTGTATGGCGATCATAGCGGTGCACTGGTTGATGAACTTAGCTCCTCT
TTGAATCCATCTGCAAAGGGGAAACTGCGACTTGCGGTGGAAAGTAGCTG
GATTGATCTGGCCAAACGTGCTCAAGTTCTCGCTTGTGTTTTTCGTGTTG
CAGGAATATATGGTCCAAGTCGAAACGCCCTCCAGACCTTATTGCGAAAT
CCGAGTGTGATGAATCAGACCTCAGACACGCTTGACATGATCGTTTCTCG
CATTCATGTGGTCGATCTGGCCAACGCTGTAACGTCGGCCGTCTATTTAG
AACATCCAGAATCTGAAGCGCGTTCGTTTAGTCAAGTCTATTACAACATA
GGTGATGATCTTCCAGCAAGTCGACGAGCTGTATTTGGATACGCTGCTGC
ATTGCTACAGGGTACAAAATTCCCACGGCATACTACGGATAGTCGAGTAG
CAGCTGTTTCGACTCGTCACAGTATCAGGGCGAGCAAACAAGTTTCGAAC
GCTAAGATGAAGAATCTTCTTCTACCAAACCTCTCCTTCCCAACATATCG
AGAAGGCCTGGGCGCCATAGCTCAAGAACTGGAAATATCAAAGAGGCCGC
TATACTAA
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protein sequence of Gchil10043.t1

>Gchil10043.t1 ID=Gchil10043.t1|Name=Gchil10043.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=336bp
MQPHSAFVLQPFMSDVRSHNGGAQKKIFVFGLGYAGIRIAHQLRKSGASI
AGITQSTVSSSSNHQDSMVVQSCEGTSKSLITAFVGYHLKNSTHVLSTVA
PDMFRSEDPILAQYADLLLKSDTIRWFGYLSSTSVYGDHSGALVDELSSS
LNPSAKGKLRLAVESSWIDLAKRAQVLACVFRVAGIYGPSRNALQTLLRN
PSVMNQTSDTLDMIVSRIHVVDLANAVTSAVYLEHPESEARSFSQVYYNI
GDDLPASRRAVFGYAAALLQGTKFPRHTTDSRVAAVSTRHSIRASKQVSN
AKMKNLLLPNLSFPTYREGLGAIAQELEISKRPLY*
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mRNA from alignment at tig00004442_pilon:550780..551967+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil10043.t1 ID=Gchil10043.t1|Name=Gchil10043.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at tig00004442_pilon:550780..551967+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAACCGCATTCAGCCTTCGTGCTACAGCCGTTTATGTCTGACGTCCG
CTCTCACAATGGTGGAGCCCAGAAGAAGATTTTTGTGTTTGGACTTGGCT
ATGCTGGAATTAGGATTGCTCATCAGCTAAGTATGGAACTCATACTTCTT
TTTCTGCTCTCACCGATACGCTGACCAAGATTGCAATGCTGTCCCTTTAT
GGAAATATGATTACGTTGTGGAAGGGAAATCAGGGGCTTCTATAGCTGGA
ATCACACAATCTACGGTAAGCTCTTCATCTAATCATCAAGATTCAATGGT
TGTTCAGTCTTGCGAAGGAACTTCTAAAAGTCTGATTACGGCTTTTGTTG
GGTATCATTTAAAGAATTCCACACACGTGCTTTCGACAGTTGCCCCAGAT
ATGTTCCGTTCTGAGGATCCAATTTTAGCACAATATGCTGATCTTCTTCT
CAAGTCCGACACCATAAGGTGGTTCGTAAGTCCCGAAAAGCTCTCCATCA
TCTGTTTCACTATTGGTTGTTTGAATACTAACAAATTTGGGGTGAGCACA
AACATGATCAGGGATATCTCTCAAGCACCAGCGTGTATGGCGATCATAGC
GGTGCACTGGTTGATGAACTTAGCTCCTCTTTGAATCCATCTGCAAAGGG
GAAACTGCGACTTGCGGTGGAAAGTAGCTGGATTGATCTGGCCAAACGTG
CTCAAGTTCTCGCTTGTGTTTTTCGTGTTGCAGGAATATATGGTCCAAGT
CGAAACGCCCTCCAGACCTTATTGCGAAATCCGAGTGTGATGAATCAGAC
CTCAGACACGCTTGACATGATCGTTTCTCGCATTCATGTGGTCGATCTGG
CCAACGCTGTAACGTCGGCCGTCTATTTAGAACATCCAGAATCTGAAGCG
CGTTCGTTTAGTCAAGTCTATTACAACATAGGTGATGATCTTCCAGCAAG
TCGACGAGCTGTATTTGGATACGCTGCTGCATTGCTACAGGGTACAAAAT
TCCCACGGCATACTACGGATAGTCGAGTAGCAGCTGTTTCGACTCGTCAC
AGTATCAGGGCGAGCAAACAAGTTTCGAACGCTAAGATGAAGAATCTTCT
TCTACCAAACCTCTCCTTCCCAACATATCGAGAAGGCCTGGGCGCCATAG
CTCAAGAACTGGAAATATCAAAGAGGCCGCTATACTAA
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Coding sequence (CDS) from alignment at tig00004442_pilon:550780..551967+

>Gchil10043.t1 ID=Gchil10043.t1|Name=Gchil10043.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1008bp|location=Sequence derived from alignment at tig00004442_pilon:550780..551967+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAACCGCATTCAGCCTTCGTGCTACAGCCGTTTATGTCTGACGTCCG
CTCTCACAATGGTGGAGCCCAGAAGAAGATTTTTGTGTTTGGACTTGGCT
ATGCTGGAATTAGGATTGCTCATCAGCTAAGGAAATCAGGGGCTTCTATA
GCTGGAATCACACAATCTACGGTAAGCTCTTCATCTAATCATCAAGATTC
AATGGTTGTTCAGTCTTGCGAAGGAACTTCTAAAAGTCTGATTACGGCTT
TTGTTGGGTATCATTTAAAGAATTCCACACACGTGCTTTCGACAGTTGCC
CCAGATATGTTCCGTTCTGAGGATCCAATTTTAGCACAATATGCTGATCT
TCTTCTCAAGTCCGACACCATAAGGTGGTTCGGATATCTCTCAAGCACCA
GCGTGTATGGCGATCATAGCGGTGCACTGGTTGATGAACTTAGCTCCTCT
TTGAATCCATCTGCAAAGGGGAAACTGCGACTTGCGGTGGAAAGTAGCTG
GATTGATCTGGCCAAACGTGCTCAAGTTCTCGCTTGTGTTTTTCGTGTTG
CAGGAATATATGGTCCAAGTCGAAACGCCCTCCAGACCTTATTGCGAAAT
CCGAGTGTGATGAATCAGACCTCAGACACGCTTGACATGATCGTTTCTCG
CATTCATGTGGTCGATCTGGCCAACGCTGTAACGTCGGCCGTCTATTTAG
AACATCCAGAATCTGAAGCGCGTTCGTTTAGTCAAGTCTATTACAACATA
GGTGATGATCTTCCAGCAAGTCGACGAGCTGTATTTGGATACGCTGCTGC
ATTGCTACAGGGTACAAAATTCCCACGGCATACTACGGATAGTCGAGTAG
CAGCTGTTTCGACTCGTCACAGTATCAGGGCGAGCAAACAAGTTTCGAAC
GCTAAGATGAAGAATCTTCTTCTACCAAACCTCTCCTTCCCAACATATCG
AGAAGGCCTGGGCGCCATAGCTCAAGAACTGGAAATATCAAAGAGGCCGC
TATACTAA
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