|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 1230343.CANP01000043_gene3336 |
Max annot lvl | 118969|Legionellales |
Evalue | 2.07e-41 |
EggNOG OGs | COG0451@1|root,COG0451@2|Bacteria,1MWVJ@1224|Proteobacteria,1RNDT@1236|Gammaproteobacteria,1JD8U@118969|Legionellales |
Description | COG0451 Nucleoside-diphosphate-sugar epimerases |
COG category | GM |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following intron feature(s) are a part of this mRNA:
The following stop_codon feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil10043.t1 ID=Gchil10043.t1|Name=Gchil10043.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=336bp MQPHSAFVLQPFMSDVRSHNGGAQKKIFVFGLGYAGIRIAHQLRKSGASI AGITQSTVSSSSNHQDSMVVQSCEGTSKSLITAFVGYHLKNSTHVLSTVA PDMFRSEDPILAQYADLLLKSDTIRWFGYLSSTSVYGDHSGALVDELSSS LNPSAKGKLRLAVESSWIDLAKRAQVLACVFRVAGIYGPSRNALQTLLRN PSVMNQTSDTLDMIVSRIHVVDLANAVTSAVYLEHPESEARSFSQVYYNI GDDLPASRRAVFGYAAALLQGTKFPRHTTDSRVAAVSTRHSIRASKQVSN AKMKNLLLPNLSFPTYREGLGAIAQELEISKRPLY* back to topspliced messenger RNA >Gchil10043.t1 ID=Gchil10043.t1|Name=Gchil10043.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1008bp|location=Sequence derived from alignment at tig00004442_pilon:550780..551967+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGCAACCGCATTCAGCCTTCGTGCTACAGCCGTTTATGTCTGACGTCCG CTCTCACAATGGTGGAGCCCAGAAGAAGATTTTTGTGTTTGGACTTGGCT ATGCTGGAATTAGGATTGCTCATCAGCTAAGGAAATCAGGGGCTTCTATA GCTGGAATCACACAATCTACGGTAAGCTCTTCATCTAATCATCAAGATTC AATGGTTGTTCAGTCTTGCGAAGGAACTTCTAAAAGTCTGATTACGGCTT TTGTTGGGTATCATTTAAAGAATTCCACACACGTGCTTTCGACAGTTGCC CCAGATATGTTCCGTTCTGAGGATCCAATTTTAGCACAATATGCTGATCT TCTTCTCAAGTCCGACACCATAAGGTGGTTCGGATATCTCTCAAGCACCA GCGTGTATGGCGATCATAGCGGTGCACTGGTTGATGAACTTAGCTCCTCT TTGAATCCATCTGCAAAGGGGAAACTGCGACTTGCGGTGGAAAGTAGCTG GATTGATCTGGCCAAACGTGCTCAAGTTCTCGCTTGTGTTTTTCGTGTTG CAGGAATATATGGTCCAAGTCGAAACGCCCTCCAGACCTTATTGCGAAAT CCGAGTGTGATGAATCAGACCTCAGACACGCTTGACATGATCGTTTCTCG CATTCATGTGGTCGATCTGGCCAACGCTGTAACGTCGGCCGTCTATTTAG AACATCCAGAATCTGAAGCGCGTTCGTTTAGTCAAGTCTATTACAACATA GGTGATGATCTTCCAGCAAGTCGACGAGCTGTATTTGGATACGCTGCTGC ATTGCTACAGGGTACAAAATTCCCACGGCATACTACGGATAGTCGAGTAG CAGCTGTTTCGACTCGTCACAGTATCAGGGCGAGCAAACAAGTTTCGAAC GCTAAGATGAAGAATCTTCTTCTACCAAACCTCTCCTTCCCAACATATCG AGAAGGCCTGGGCGCCATAGCTCAAGAACTGGAAATATCAAAGAGGCCGC TATACTAA back to topprotein sequence of Gchil10043.t1 >Gchil10043.t1 ID=Gchil10043.t1|Name=Gchil10043.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=336bp
MQPHSAFVLQPFMSDVRSHNGGAQKKIFVFGLGYAGIRIAHQLRKSGASI AGITQSTVSSSSNHQDSMVVQSCEGTSKSLITAFVGYHLKNSTHVLSTVA PDMFRSEDPILAQYADLLLKSDTIRWFGYLSSTSVYGDHSGALVDELSSS LNPSAKGKLRLAVESSWIDLAKRAQVLACVFRVAGIYGPSRNALQTLLRN PSVMNQTSDTLDMIVSRIHVVDLANAVTSAVYLEHPESEARSFSQVYYNI GDDLPASRRAVFGYAAALLQGTKFPRHTTDSRVAAVSTRHSIRASKQVSN AKMKNLLLPNLSFPTYREGLGAIAQELEISKRPLY* back to topmRNA from alignment at tig00004442_pilon:550780..551967+ Legend: polypeptidestart_codonCDSexonintronstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil10043.t1 ID=Gchil10043.t1|Name=Gchil10043.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1188bp|location=Sequence derived from alignment at tig00004442_pilon:550780..551967+ (Gracilaria chilensis NLEC103_M9 male) ATGCAACCGCATTCAGCCTTCGTGCTACAGCCGTTTATGTCTGACGTCCG
CTCTCACAATGGTGGAGCCCAGAAGAAGATTTTTGTGTTTGGACTTGGCT
ATGCTGGAATTAGGATTGCTCATCAGCTAAGTATGGAACTCATACTTCTT
TTTCTGCTCTCACCGATACGCTGACCAAGATTGCAATGCTGTCCCTTTAT
GGAAATATGATTACGTTGTGGAAGGGAAATCAGGGGCTTCTATAGCTGGA
ATCACACAATCTACGGTAAGCTCTTCATCTAATCATCAAGATTCAATGGT
TGTTCAGTCTTGCGAAGGAACTTCTAAAAGTCTGATTACGGCTTTTGTTG
GGTATCATTTAAAGAATTCCACACACGTGCTTTCGACAGTTGCCCCAGAT
ATGTTCCGTTCTGAGGATCCAATTTTAGCACAATATGCTGATCTTCTTCT
CAAGTCCGACACCATAAGGTGGTTCGTAAGTCCCGAAAAGCTCTCCATCA
TCTGTTTCACTATTGGTTGTTTGAATACTAACAAATTTGGGGTGAGCACA
AACATGATCAGGGATATCTCTCAAGCACCAGCGTGTATGGCGATCATAGC
GGTGCACTGGTTGATGAACTTAGCTCCTCTTTGAATCCATCTGCAAAGGG
GAAACTGCGACTTGCGGTGGAAAGTAGCTGGATTGATCTGGCCAAACGTG
CTCAAGTTCTCGCTTGTGTTTTTCGTGTTGCAGGAATATATGGTCCAAGT
CGAAACGCCCTCCAGACCTTATTGCGAAATCCGAGTGTGATGAATCAGAC
CTCAGACACGCTTGACATGATCGTTTCTCGCATTCATGTGGTCGATCTGG
CCAACGCTGTAACGTCGGCCGTCTATTTAGAACATCCAGAATCTGAAGCG
CGTTCGTTTAGTCAAGTCTATTACAACATAGGTGATGATCTTCCAGCAAG
TCGACGAGCTGTATTTGGATACGCTGCTGCATTGCTACAGGGTACAAAAT
TCCCACGGCATACTACGGATAGTCGAGTAGCAGCTGTTTCGACTCGTCAC
AGTATCAGGGCGAGCAAACAAGTTTCGAACGCTAAGATGAAGAATCTTCT
TCTACCAAACCTCTCCTTCCCAACATATCGAGAAGGCCTGGGCGCCATAG
CTCAAGAACTGGAAATATCAAAGAGGCCGCTATACTAA back to topCoding sequence (CDS) from alignment at tig00004442_pilon:550780..551967+ >Gchil10043.t1 ID=Gchil10043.t1|Name=Gchil10043.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1008bp|location=Sequence derived from alignment at tig00004442_pilon:550780..551967+ (Gracilaria chilensis NLEC103_M9 male) ATGCAACCGCATTCAGCCTTCGTGCTACAGCCGTTTATGTCTGACGTCCG CTCTCACAATGGTGGAGCCCAGAAGAAGATTTTTGTGTTTGGACTTGGCT ATGCTGGAATTAGGATTGCTCATCAGCTAAGGAAATCAGGGGCTTCTATA GCTGGAATCACACAATCTACGGTAAGCTCTTCATCTAATCATCAAGATTC AATGGTTGTTCAGTCTTGCGAAGGAACTTCTAAAAGTCTGATTACGGCTT TTGTTGGGTATCATTTAAAGAATTCCACACACGTGCTTTCGACAGTTGCC CCAGATATGTTCCGTTCTGAGGATCCAATTTTAGCACAATATGCTGATCT TCTTCTCAAGTCCGACACCATAAGGTGGTTCGGATATCTCTCAAGCACCA GCGTGTATGGCGATCATAGCGGTGCACTGGTTGATGAACTTAGCTCCTCT TTGAATCCATCTGCAAAGGGGAAACTGCGACTTGCGGTGGAAAGTAGCTG GATTGATCTGGCCAAACGTGCTCAAGTTCTCGCTTGTGTTTTTCGTGTTG CAGGAATATATGGTCCAAGTCGAAACGCCCTCCAGACCTTATTGCGAAAT CCGAGTGTGATGAATCAGACCTCAGACACGCTTGACATGATCGTTTCTCG CATTCATGTGGTCGATCTGGCCAACGCTGTAACGTCGGCCGTCTATTTAG AACATCCAGAATCTGAAGCGCGTTCGTTTAGTCAAGTCTATTACAACATA GGTGATGATCTTCCAGCAAGTCGACGAGCTGTATTTGGATACGCTGCTGC ATTGCTACAGGGTACAAAATTCCCACGGCATACTACGGATAGTCGAGTAG CAGCTGTTTCGACTCGTCACAGTATCAGGGCGAGCAAACAAGTTTCGAAC GCTAAGATGAAGAATCTTCTTCTACCAAACCTCTCCTTCCCAACATATCG AGAAGGCCTGGGCGCCATAGCTCAAGAACTGGAAATATCAAAGAGGCCGC TATACTAA back to top
|