Gchil7098.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil7098.t1
Unique Name	Gchil7098.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	577

Homology

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BLAST of Gchil7098.t1 vs. uniprot
Match: A0A2V3IXK3_9FLOR (Putative RNA-binding protein RbpE n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXK3_9FLOR)

HSP 1 Score: 161 bits (408), Expect = 5.390e-39
Identity = 82/131 (62.60%), Postives = 103/131 (78.63%), Query Frame = 0

Query:  331 EKVPMETVKKHSSERKNDAQLGHGKRKLDSFEQVERSNKKHQPVASSEEELRVFVGGVPFACTEDELGSFLSECGEITDLYLPRDRETDRIRGYAFVSFKDVDGAKAAIKLDGTILKGRHLRINPAGSKPG 461
            EKVPM+  ++ + E+   AQ    KRK D  +Q  +  KKH+P     ++LRVFVGGVPF+ TEDELGS+ SECGEITDL+LPRDRETDRIRG+AF+SF +  GAKAA++LDG++LKGRHLR+NPAGSKPG
Sbjct:  340 EKVPMDIDQQSTPEKNLSAQHVGQKRKQDLDDQNSQPFKKHEPNVRPSDDLRVFVGGVPFSITEDELGSYFSECGEITDLFLPRDRETDRIRGFAFISFANNLGAKAAMELDGSLLKGRHLRVNPAGSKPG 470

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BLAST of Gchil7098.t1 vs. uniprot
Match: R7Q3L3_CHOCR (RRM domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q3L3_CHOCR)

HSP 1 Score: 138 bits (347), Expect = 3.310e-31
Identity = 74/141 (52.48%), Postives = 94/141 (66.67%), Query Frame = 0

Query:  333 VPMETVKKHSSERKNDAQLGHGKRKLDSFEQVERSNKKHQPVASSEEELRVFVGGVPFACTEDELGSFLSECGEITDLYLPRDRETDRIRGYAFVSFKDVDGAKAAIKLDGTILKGRHLRINPAGSKP--GSERNGRGARG 471
             PM   K    + K  AQ+G  KR   S E   + +K+HQ  A SEEE+RVFVG +P+  TED+L   L  CGE+TD+YLPRDRET+R+RG+ FVSF +  GA+AA ++DG + KGR L INPAGSKP  G+ R G G RG
Sbjct:  302 TPMSVEKGKLHDDKMLAQVGQ-KRDAPSAENTPQPHKRHQAAAGSEEEVRVFVGNIPWTITEDDLAETLGSCGELTDIYLPRDRETERLRGFGFVSFSEPSGAQAACEMDGVMCKGRPLNINPAGSKPSGGNSRGGFGGRG 441

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BLAST of Gchil7098.t1 vs. uniprot
Match: A0A1X6NUQ8_PORUM (RRM domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NUQ8_PORUM)

HSP 1 Score: 92.4 bits (228), Expect = 3.760e-16
Identity = 45/93 (48.39%), Postives = 61/93 (65.59%), Query Frame = 0

Query:  369 KKHQPVASSEEELRVFVGGVPFACTEDELGSFLSECGEITDLYLPRDRETDRIRGYAFVSFKDVDGA-KAAIKLDGTILKGRHLRINPAGSKP 460
            K+H P   +  E+R+FVG +PF  + +EL      CG + D+Y P DRET+R RG+ FVS+++ +GA KA  +LDG    GR LRIN AGSKP
Sbjct:  303 KRHAPADDNAGEVRLFVGNLPFNASTEELAEHFGSCGAVADVYCPMDRETERPRGFGFVSYEEPEGASKAVAELDGVDFMGRALRINFAGSKP 395

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BLAST of Gchil7098.t1 vs. uniprot
Match: A0A7S3RMJ1_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3RMJ1_9SPIT)

HSP 1 Score: 80.5 bits (197), Expect = 3.680e-14
Identity = 39/95 (41.05%), Postives = 64/95 (67.37%), Query Frame = 0

Query:  374 VASSEEELRVFVGGVPFACTEDELGSFLSECGEITDLYLPRDRETDRIRGYAFVSFKDVDGAKAAIKLDGTILKGRHLRINPAGSKPGSERNGRG 468
            V    + L++FVGG+PF+ T+++L    +ECGE+TDL++P++ E  + RG AF++F   +G +AA+K DG    GR L++N AG + G +  G+G
Sbjct:   64 VGDDRDALKIFVGGLPFSTTQEQLKKDFTECGEVTDLHMPKNEE-GQSRGIAFITFATQEGLEAALKYDGDEYGGRTLKVNKAGDR-GEKGKGKG 156

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BLAST of Gchil7098.t1 vs. uniprot
Match: A0A0Q9YHR2_9COXI (RNA recognition motif n=2 Tax=Candidatus Berkiella cookevillensis TaxID=437022 RepID=A0A0Q9YHR2_9COXI)

HSP 1 Score: 77.8 bits (190), Expect = 7.170e-14
Identity = 36/82 (43.90%), Postives = 56/82 (68.29%), Query Frame = 0

Query:  382 RVFVGGVPFACTEDELGSFLSECGEITDLYLPRDRETDRIRGYAFVSFKDVDGAKAAIKLDGTILKGRHLRINPAGSKPGSE 463
            +V+VG + ++ TE EL SF S+CG +TD+ +  D+ T + RG+AFV+F+D DG   AI  +G+ + GR L+I+ A  KP S+
Sbjct:    5 KVYVGNLNYSATEQELHSFFSDCGTVTDVAVLMDKITGKARGFAFVTFEDADGMNKAISKNGSDMMGRSLKISQAEQKPKSD 86

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BLAST of Gchil7098.t1 vs. uniprot
Match: A0A7S0AZJ1_9DINO (Hypothetical protein (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7S0AZJ1_9DINO)

HSP 1 Score: 77.8 bits (190), Expect = 1.610e-13
Identity = 39/82 (47.56%), Postives = 55/82 (67.07%), Query Frame = 0

Query:  378 EEELRVFVGGVPFACTEDELGSFLSECGEITDLYLPRDRETDRIRGYAFVSFKDVDGAKAAIKLDGTILKGRHLRINPAGSK 459
            ++EL VFVGG+PF+ TE+ L    +ECGEI  L +P++ E  + RG AF++FK  +G K A+  DGT   GR L++N AG K
Sbjct:   35 DQELTVFVGGLPFSTTEEMLKKDFTECGEIEKLNMPKNDE-GKSRGIAFITFKTAEGVKEALAYDGTDYGGRFLKVNKAGEK 115

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BLAST of Gchil7098.t1 vs. uniprot
Match: A0A1F7UMU1_9BACT (RNA-binding protein n=1 Tax=Candidatus Uhrbacteria bacterium RIFCSPHIGHO2_12_FULL_60_25 TaxID=1802399 RepID=A0A1F7UMU1_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 2.810e-13
Identity = 38/90 (42.22%), Postives = 59/90 (65.56%), Query Frame = 0

Query:  382 RVFVGGVPFACTEDELGSFLSECGEITDLYLPRDRETDRIRGYAFVSFKDVDGAKAAIKL-DGTILKGRHLRINPAGSKPGSERNGRGAR 470
            ++FVGG+P+  T++EL    S+ GE++ +++P DRET+R RG+AFV   D   A+ AI + DG+ + GR + +N A  +P  ER  RG R
Sbjct:    4 KLFVGGIPYRATDEELRQLFSQAGEVSSVFIPMDRETNRPRGFAFVEMADDAAAEKAISMFDGSDMGGRRIAVNKA--RPMEERAPRGPR 91

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BLAST of Gchil7098.t1 vs. uniprot
Match: A0A261BKH6_9PELO (RRM domain-containing protein (Fragment) n=1 Tax=Caenorhabditis latens TaxID=1503980 RepID=A0A261BKH6_9PELO)

HSP 1 Score: 74.7 bits (182), Expect = 5.900e-13
Identity = 37/78 (47.44%), Postives = 52/78 (66.67%), Query Frame = 0

Query:  383 VFVGGVPFACTEDELGSFLSECGEITDLYLPRDRETDRIRGYAFVSFKDVDGAKAAIK-LDGTILKGRHLRINPAGSK 459
            V+VG  PF  TE+E+G+F S  G +T++ +  DRET R RG+AFV F D  GA+ A++ L+G    GR LR+N A +K
Sbjct:    8 VYVGNAPFQTTEEEIGNFFSNVGNVTNVRIVYDRETGRPRGFAFVEFADEAGAQKAVQELNGADFNGRQLRVNLANNK 85

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BLAST of Gchil7098.t1 vs. uniprot
Match: A0A1B2ZB66_9BACT (RNA-binding protein n=1 Tax=uncultured bacterium TaxID=77133 RepID=A0A1B2ZB66_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 6.760e-13
Identity = 40/91 (43.96%), Postives = 58/91 (63.74%), Query Frame = 0

Query:  381 LRVFVGGVPFACTEDELGSFLSECGEITDLYLPRDRETDRIRGYAFVSFKDVDGAKAAIK-LDGTILKGRHLRINPAGSKPGSERNGRGAR 470
            ++++VG + F  T+ +L SF S+ G +TD++LP DRET R RG+AFV+       + AIK  DG  L GR+L++N A  +P  ER G G R
Sbjct:    1 MKMYVGNLSFDSTKQDLESFFSQYGSVTDVHLPEDRETGRPRGFAFVTMDSQSAMEDAIKGADGKDLDGRNLKVNEA--RPREERGGGGGR 89

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BLAST of Gchil7098.t1 vs. uniprot
Match: UPI001C085590 (glycine-rich RNA-binding, abscisic acid-inducible protein-like n=1 Tax=Alosa sapidissima TaxID=34773 RepID=UPI001C085590)

HSP 1 Score: 77.0 bits (188), Expect = 9.510e-13
Identity = 39/89 (43.82%), Postives = 59/89 (66.29%), Query Frame = 0

Query:  379 EELRVFVGGVPFACTEDELGSFLSECGEITDLYLPRDRETDRIRGYAFVSFKDVDGAKAAIK-LDGTILKGRHLRINPAGSKPGSERNG 466
            +E ++FVGG+ F  T + L    S  G ITD+++ +DRETDR RG+ F++F + + AK A++ +DG  L GR +R++ AGSKPG    G
Sbjct:    3 DEGKLFVGGLSFNTTTETLQDAFSRYGAITDVHVAKDRETDRPRGFGFITFDNPEDAKDALEGMDGQSLDGRTIRVDKAGSKPGGRGGG 91

The following BLAST results are available for this feature:

BLAST of Gchil7098.t1 vs. uniprot

BLAST of Gchil7098.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2V3IXK3_9FLOR	5.390e-39	62.60	Putative RNA-binding protein RbpE n=1 Tax=Gracilar...	[more]
R7Q3L3_CHOCR	3.310e-31	52.48	RRM domain-containing protein n=1 Tax=Chondrus cri...	[more]
A0A1X6NUQ8_PORUM	3.760e-16	48.39	RRM domain-containing protein n=1 Tax=Porphyra umb...	[more]
A0A7S3RMJ1_9SPIT	3.680e-14	41.05	Hypothetical protein (Fragment) n=1 Tax=Strombidin...	[more]
A0A0Q9YHR2_9COXI	7.170e-14	43.90	RNA recognition motif n=2 Tax=Candidatus Berkiella...	[more]
A0A7S0AZJ1_9DINO	1.610e-13	47.56	Hypothetical protein (Fragment) n=1 Tax=Pyrodinium...	[more]
A0A1F7UMU1_9BACT	2.810e-13	42.22	RNA-binding protein n=1 Tax=Candidatus Uhrbacteria...	[more]
A0A261BKH6_9PELO	5.900e-13	47.44	RRM domain-containing protein (Fragment) n=1 Tax=C...	[more]
A0A1B2ZB66_9BACT	6.760e-13	43.96	RNA-binding protein n=1 Tax=uncultured bacterium T...	[more]
UPI001C085590	9.510e-13	43.82	glycine-rich RNA-binding, abscisic acid-inducible ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 382..454 e-value: 4.8E-24 score: 95.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 383..451 e-value: 8.6E-19 score: 67.2
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 381..458 score: 17.932785
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 351..495 e-value: 9.7E-33 score: 115.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 452..576
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 327..375
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 203..241
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 300..315
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 107..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 253..276
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..375
None	No IPR available	PANTHER	PTHR48027	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED	coord: 272..538
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 376..488

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004441_pilon	contig	tig00004441_pilon:105408..107138 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7098.t1	Gchil7098.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00004441_pilon 105408..107138 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil7098.t1 ID=Gchil7098.t1|Name=Gchil7098.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=577bp
MTRTKKAAKKSKRRDVSAADHHDTKLATPAAVKSSKSGKRKAKLPSAVVS
NATAVQLSPSRSKESSKKDKKNKKSKGKKKPPTPPPESEDESSEDENDAS
ASESNSEEDELQTKDNRDRSGKKNQTKSKKPKNKEESSDEDSSSDDESDS
PPPNLKTAKQKKAQDSKKAGDDESSSDDDDSPSEEGDETKKQHEVVVNGH
KSAATDEGSSASESSGSESSNDEPNVKQNGSGKPSLKTKMSGGDSESDED
SEYEEIVPKKQSRKKVKKAKDSESSDSSDDGSDDSEEEPTTKKGEPNASV
KDASVSSPHSDSSSSESVDESPDDSSGEGDEKVPMETVKKHSSERKNDAQ
LGHGKRKLDSFEQVERSNKKHQPVASSEEELRVFVGGVPFACTEDELGSF
LSECGEITDLYLPRDRETDRIRGYAFVSFKDVDGAKAAIKLDGTILKGRH
LRINPAGSKPGSERNGRGARGGGYGRGTRGGRGGRGGYMGGFGDAGGRDW
GRGGGQRGGRGRGFGNRGGFGDRGGFGGRGGFDNRGGFGNRRGFGNRGGF
GGQGGPGTFANGGAKGTKTTFEDDSD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf