Gchil7098.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil7098.t1
Unique Name	Gchil7098.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	577

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004441_pilon	contig	tig00004441_pilon:105408..107138 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	78898.MVEG_03343T0
PFAMs	RRM_1
Max annot lvl	4751\|Fungi
KEGG ko	ko:K11294
KEGG Pathway	ko05130,map05130
GOs	GO:0001651,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0031974,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Evalue	1.42e-12
EggNOG OGs	KOG4210@1\|root,KOG4210@2759\|Eukaryota,38ECB@33154\|Opisthokonta,3NWRG@4751\|Fungi,1GTS0@112252\|Fungi incertae sedis
Description	Mortierella verticillata NRRL 6337 nucleolin
COG category	K
BRITE	ko00000,ko00001,ko03009,ko03036

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil7098	Gchil7098	Gracilaria chilensis NLEC103_M9 male	gene	tig00004441_pilon 105408..107138 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7098.t1.start1	Gchil7098.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004441_pilon 105408..105410 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7098.t1.CDS1	Gchil7098.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004441_pilon 105408..107138 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7098.t1.exon1	Gchil7098.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004441_pilon 105408..107138 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7098.t1.stop1	Gchil7098.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004441_pilon 107136..107138 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil7098.t1	Gchil7098.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004441_pilon 105408..107138 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004441_pilon:105408..107138+
coding sequence from alignment at tig00004441_pilon:105408..107138+

mRNA sequence

>Gchil7098.t1 ID=Gchil7098.t1|Name=Gchil7098.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=577bp
MTRTKKAAKKSKRRDVSAADHHDTKLATPAAVKSSKSGKRKAKLPSAVVS
NATAVQLSPSRSKESSKKDKKNKKSKGKKKPPTPPPESEDESSEDENDAS
ASESNSEEDELQTKDNRDRSGKKNQTKSKKPKNKEESSDEDSSSDDESDS
PPPNLKTAKQKKAQDSKKAGDDESSSDDDDSPSEEGDETKKQHEVVVNGH
KSAATDEGSSASESSGSESSNDEPNVKQNGSGKPSLKTKMSGGDSESDED
SEYEEIVPKKQSRKKVKKAKDSESSDSSDDGSDDSEEEPTTKKGEPNASV
KDASVSSPHSDSSSSESVDESPDDSSGEGDEKVPMETVKKHSSERKNDAQ
LGHGKRKLDSFEQVERSNKKHQPVASSEEELRVFVGGVPFACTEDELGSF
LSECGEITDLYLPRDRETDRIRGYAFVSFKDVDGAKAAIKLDGTILKGRH
LRINPAGSKPGSERNGRGARGGGYGRGTRGGRGGRGGYMGGFGDAGGRDW
GRGGGQRGGRGRGFGNRGGFGDRGGFGGRGGFDNRGGFGNRRGFGNRGGF
GGQGGPGTFANGGAKGTKTTFEDDSD*

spliced messenger RNA

>Gchil7098.t1 ID=Gchil7098.t1|Name=Gchil7098.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1731bp|location=Sequence derived from alignment at tig00004441_pilon:105408..107138+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACTCGTACCAAGAAGGCCGCCAAGAAAAGCAAGAGGAGAGATGTCTC
AGCTGCTGACCATCATGATACCAAGCTGGCGACTCCGGCAGCAGTGAAAT
CTTCGAAGAGCGGCAAGCGTAAAGCTAAATTACCTTCTGCCGTCGTGTCG
AACGCGACAGCCGTTCAGCTATCCCCATCCCGCTCTAAGGAGAGCTCCaa
gaaagacaagaagaacaagaagagtaaaggtaagaagaagCCACCTACCC
CGCCTCCAGAGTCCGAAGACGAATCCAGTGAAGATGAAAACGATGCATCT
GCATCTGAGAGTAATAGTGAGGAAGACGAACTGCAGACCAAAGACAACAG
AGACCGCTCTGGAAAGAAGAACCAAACCAAGTCCAAGAAACCTAAAAACA
AGGAAGAGTCGAGTGACGAAGACTCCAGCAGCGATGATGAGAGCGATTCT
CCGCCTCCAAATCTAAAAACCGCAAAACAAAAGAAGGCTCAGGACAGTAA
GAAGGCCGGGGACGACGAAAGCTCCAGTGACGACGATGACTCACCATCAG
AAGAAGGGGATGAGACAAAGAAACAGCATGAAGTTGTAGTCAACGGACAT
AAATCAGCAGCGACTGATGAGGGAAGTAGTGCAAGTGAGAGTTCTGGTTC
TGAGAGCAGCAATGATGAACCAAACGTCAAACAGAACGGCAGCGGTAAAC
CTTCTTTGAAAACCAAGATGAGTGGCGGTGATTCCGAGAGTGATGAAGAT
TCTGAATATGAGGAAATTGTGCCGAAGAAGCAGTCTAGGAAAAAAGTGAA
GAAAGCAAAGGACAGTGAAAGCTCCGACTCTTCCGATGACGGAAGTGATG
ATTCTGAAGAAGAGCCCACAACTAAGAAAGGAGAGCCGAACGCCAGCGTG
AAGGATGCCTCTGTCTCATCCCCTCACAGTGATTCAAGTTCGAGTGAGTC
TGTGGACGAATCTCCGGATGACAGCTCGGGGGAAGGTGACGAGAAAGTGC
CTATGGAAACTGTAAAGAAGCACAGCTCGGAGAGAAAAAACGATGCTCAA
CTTGGACATGGAAAGAGGAAGCTTGACTCGTTCGAACAAGTTGAACGGTC
CAATAAGAAGCACCAACCAGTCGCCTCTTCTGAGGAAGAACTTCGTGTTT
TCGTTGGAGGAGTTCCCTTTGCTTGCACAGAAGACGAATTGGGAAGTTTT
CTCTCGGAATGTGGGGAAATAACTGATTTATACCTCCCACGAGACAGGGA
AACCGACCGTATTCGAGGCTACGCATTTGTGAGCTTCAAGGATGTCGATG
GCGCGAAGGCAGCCATAAAGCTGGATGGTACCATTCTCAAAGGCAGGCAT
CTGAGGATCAATCCTGCTGGGTCCAAACCGGGTTCAGAACGAAATGGTCG
TGGTGCCCGTGGCGGGGGATATGGACGTGGTACACGCGGGGGACGTGGCG
GTCGTGGTGGATACATGGGAGGGTTTGGTGATGCCGGAGGTCGTGACTGG
GGTCGAGGTGGTGGCCAGCGAGGAGGCCGTGGCAGAGGGTTCGGCAATCG
TGGAGGATTTGGAGATCGTGGAGGATTTGGAGGTCGTGGAGGATTTGACA
ATCGTGGGGGTTTCGGAAATCGTAGAGGTTTTGGCAATCGTGGAGGTTTT
GGTGGCCAAGGAGGTCCCGGAACCTTTGCCAACGGGGGCGCTAAAGGCAC
AAAGACCACTTTCGAAGATGATAGCGACTGA

protein sequence of Gchil7098.t1

>Gchil7098.t1 ID=Gchil7098.t1|Name=Gchil7098.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=577bp
MTRTKKAAKKSKRRDVSAADHHDTKLATPAAVKSSKSGKRKAKLPSAVVS
NATAVQLSPSRSKESSKKDKKNKKSKGKKKPPTPPPESEDESSEDENDAS
ASESNSEEDELQTKDNRDRSGKKNQTKSKKPKNKEESSDEDSSSDDESDS
PPPNLKTAKQKKAQDSKKAGDDESSSDDDDSPSEEGDETKKQHEVVVNGH
KSAATDEGSSASESSGSESSNDEPNVKQNGSGKPSLKTKMSGGDSESDED
SEYEEIVPKKQSRKKVKKAKDSESSDSSDDGSDDSEEEPTTKKGEPNASV
KDASVSSPHSDSSSSESVDESPDDSSGEGDEKVPMETVKKHSSERKNDAQ
LGHGKRKLDSFEQVERSNKKHQPVASSEEELRVFVGGVPFACTEDELGSF
LSECGEITDLYLPRDRETDRIRGYAFVSFKDVDGAKAAIKLDGTILKGRH
LRINPAGSKPGSERNGRGARGGGYGRGTRGGRGGRGGYMGGFGDAGGRDW
GRGGGQRGGRGRGFGNRGGFGDRGGFGGRGGFDNRGGFGNRRGFGNRGGF
GGQGGPGTFANGGAKGTKTTFEDDSD*

mRNA from alignment at tig00004441_pilon:105408..107138+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil7098.t1 ID=Gchil7098.t1|Name=Gchil7098.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1731bp|location=Sequence derived from alignment at tig00004441_pilon:105408..107138+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTCGTACCAAGAAGGCCGCCAAGAAAAGCAAGAGGAGAGATGTCTC
AGCTGCTGACCATCATGATACCAAGCTGGCGACTCCGGCAGCAGTGAAAT
CTTCGAAGAGCGGCAAGCGTAAAGCTAAATTACCTTCTGCCGTCGTGTCG
AACGCGACAGCCGTTCAGCTATCCCCATCCCGCTCTAAGGAGAGCTCCaa
gaaagacaagaagaacaagaagagtaaaggtaagaagaagCCACCTACCC
CGCCTCCAGAGTCCGAAGACGAATCCAGTGAAGATGAAAACGATGCATCT
GCATCTGAGAGTAATAGTGAGGAAGACGAACTGCAGACCAAAGACAACAG
AGACCGCTCTGGAAAGAAGAACCAAACCAAGTCCAAGAAACCTAAAAACA
AGGAAGAGTCGAGTGACGAAGACTCCAGCAGCGATGATGAGAGCGATTCT
CCGCCTCCAAATCTAAAAACCGCAAAACAAAAGAAGGCTCAGGACAGTAA
GAAGGCCGGGGACGACGAAAGCTCCAGTGACGACGATGACTCACCATCAG
AAGAAGGGGATGAGACAAAGAAACAGCATGAAGTTGTAGTCAACGGACAT
AAATCAGCAGCGACTGATGAGGGAAGTAGTGCAAGTGAGAGTTCTGGTTC
TGAGAGCAGCAATGATGAACCAAACGTCAAACAGAACGGCAGCGGTAAAC
CTTCTTTGAAAACCAAGATGAGTGGCGGTGATTCCGAGAGTGATGAAGAT
TCTGAATATGAGGAAATTGTGCCGAAGAAGCAGTCTAGGAAAAAAGTGAA
GAAAGCAAAGGACAGTGAAAGCTCCGACTCTTCCGATGACGGAAGTGATG
ATTCTGAAGAAGAGCCCACAACTAAGAAAGGAGAGCCGAACGCCAGCGTG
AAGGATGCCTCTGTCTCATCCCCTCACAGTGATTCAAGTTCGAGTGAGTC
TGTGGACGAATCTCCGGATGACAGCTCGGGGGAAGGTGACGAGAAAGTGC
CTATGGAAACTGTAAAGAAGCACAGCTCGGAGAGAAAAAACGATGCTCAA
CTTGGACATGGAAAGAGGAAGCTTGACTCGTTCGAACAAGTTGAACGGTC
CAATAAGAAGCACCAACCAGTCGCCTCTTCTGAGGAAGAACTTCGTGTTT
TCGTTGGAGGAGTTCCCTTTGCTTGCACAGAAGACGAATTGGGAAGTTTT
CTCTCGGAATGTGGGGAAATAACTGATTTATACCTCCCACGAGACAGGGA
AACCGACCGTATTCGAGGCTACGCATTTGTGAGCTTCAAGGATGTCGATG
GCGCGAAGGCAGCCATAAAGCTGGATGGTACCATTCTCAAAGGCAGGCAT
CTGAGGATCAATCCTGCTGGGTCCAAACCGGGTTCAGAACGAAATGGTCG
TGGTGCCCGTGGCGGGGGATATGGACGTGGTACACGCGGGGGACGTGGCG
GTCGTGGTGGATACATGGGAGGGTTTGGTGATGCCGGAGGTCGTGACTGG
GGTCGAGGTGGTGGCCAGCGAGGAGGCCGTGGCAGAGGGTTCGGCAATCG
TGGAGGATTTGGAGATCGTGGAGGATTTGGAGGTCGTGGAGGATTTGACA
ATCGTGGGGGTTTCGGAAATCGTAGAGGTTTTGGCAATCGTGGAGGTTTT
GGTGGCCAAGGAGGTCCCGGAACCTTTGCCAACGGGGGCGCTAAAGGCAC
AAAGACCACTTTCGAAGATGATAGCGACTGA

Coding sequence (CDS) from alignment at tig00004441_pilon:105408..107138+

>Gchil7098.t1 ID=Gchil7098.t1|Name=Gchil7098.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1731bp|location=Sequence derived from alignment at tig00004441_pilon:105408..107138+ (Gracilaria chilensis NLEC103_M9 male)
ATGACTCGTACCAAGAAGGCCGCCAAGAAAAGCAAGAGGAGAGATGTCTC
AGCTGCTGACCATCATGATACCAAGCTGGCGACTCCGGCAGCAGTGAAAT
CTTCGAAGAGCGGCAAGCGTAAAGCTAAATTACCTTCTGCCGTCGTGTCG
AACGCGACAGCCGTTCAGCTATCCCCATCCCGCTCTAAGGAGAGCTCCaa
gaaagacaagaagaacaagaagagtaaaggtaagaagaagCCACCTACCC
CGCCTCCAGAGTCCGAAGACGAATCCAGTGAAGATGAAAACGATGCATCT
GCATCTGAGAGTAATAGTGAGGAAGACGAACTGCAGACCAAAGACAACAG
AGACCGCTCTGGAAAGAAGAACCAAACCAAGTCCAAGAAACCTAAAAACA
AGGAAGAGTCGAGTGACGAAGACTCCAGCAGCGATGATGAGAGCGATTCT
CCGCCTCCAAATCTAAAAACCGCAAAACAAAAGAAGGCTCAGGACAGTAA
GAAGGCCGGGGACGACGAAAGCTCCAGTGACGACGATGACTCACCATCAG
AAGAAGGGGATGAGACAAAGAAACAGCATGAAGTTGTAGTCAACGGACAT
AAATCAGCAGCGACTGATGAGGGAAGTAGTGCAAGTGAGAGTTCTGGTTC
TGAGAGCAGCAATGATGAACCAAACGTCAAACAGAACGGCAGCGGTAAAC
CTTCTTTGAAAACCAAGATGAGTGGCGGTGATTCCGAGAGTGATGAAGAT
TCTGAATATGAGGAAATTGTGCCGAAGAAGCAGTCTAGGAAAAAAGTGAA
GAAAGCAAAGGACAGTGAAAGCTCCGACTCTTCCGATGACGGAAGTGATG
ATTCTGAAGAAGAGCCCACAACTAAGAAAGGAGAGCCGAACGCCAGCGTG
AAGGATGCCTCTGTCTCATCCCCTCACAGTGATTCAAGTTCGAGTGAGTC
TGTGGACGAATCTCCGGATGACAGCTCGGGGGAAGGTGACGAGAAAGTGC
CTATGGAAACTGTAAAGAAGCACAGCTCGGAGAGAAAAAACGATGCTCAA
CTTGGACATGGAAAGAGGAAGCTTGACTCGTTCGAACAAGTTGAACGGTC
CAATAAGAAGCACCAACCAGTCGCCTCTTCTGAGGAAGAACTTCGTGTTT
TCGTTGGAGGAGTTCCCTTTGCTTGCACAGAAGACGAATTGGGAAGTTTT
CTCTCGGAATGTGGGGAAATAACTGATTTATACCTCCCACGAGACAGGGA
AACCGACCGTATTCGAGGCTACGCATTTGTGAGCTTCAAGGATGTCGATG
GCGCGAAGGCAGCCATAAAGCTGGATGGTACCATTCTCAAAGGCAGGCAT
CTGAGGATCAATCCTGCTGGGTCCAAACCGGGTTCAGAACGAAATGGTCG
TGGTGCCCGTGGCGGGGGATATGGACGTGGTACACGCGGGGGACGTGGCG
GTCGTGGTGGATACATGGGAGGGTTTGGTGATGCCGGAGGTCGTGACTGG
GGTCGAGGTGGTGGCCAGCGAGGAGGCCGTGGCAGAGGGTTCGGCAATCG
TGGAGGATTTGGAGATCGTGGAGGATTTGGAGGTCGTGGAGGATTTGACA
ATCGTGGGGGTTTCGGAAATCGTAGAGGTTTTGGCAATCGTGGAGGTTTT
GGTGGCCAAGGAGGTCCCGGAACCTTTGCCAACGGGGGCGCTAAAGGCAC
AAAGACCACTTTCGAAGATGATAGCGACTGA