Gchil7284.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7284.t1
Unique NameGchil7284.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length339
Homology
[Close]
BLAST of Gchil7284.t1 vs. uniprot
Match: A0A2V3J4I4_9FLOR (Deoxyribodipyrimidine photo-lyase n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4I4_9FLOR)

HSP 1 Score: 174 bits (440), Expect = 3.500e-48
Identity = 140/331 (42.30%), Postives = 185/331 (55.89%), Query Frame = 0 
Query:    1 MSRPAFVPTLPACSARRAIAATPHAARQTIATTTPLHAAIAHSSYPTPLPISQLQAPTQLRPPRAAPLPPS--SRILLWMDGAQRVHDNVALTAAARATRHA--PDAALVPVLLAPHSPPP---ALAAELRAALQTLGSDLLCKTAQPTRELPALCARLRLHAVYFVRAAYGQLA--RHQRQAESALRRAGVHVHSFAPDVLPVTRASEA-KRLRVRDLAAAVDSVKATERSQAPPSSLPAVPTAVARETQLCVTPRVGGGSSAAFKLLARMTRREELSHARRLPDQLAFRLKLHLDHGSISMRTVAARVAAVMGSLTGSTFHELVWRTFL 321
            MS  AFVPTL   S++ +    P      ++ T P   AI     PTP         T   PP   P PP+  SRILLW+    R+ DN AL  AA+   HA  P  AL+P+    H+  P   ++A+EL A L +LGS LL     P   LP +C +L LHAVY+ R     ++   H+R   +AL+ AG+HV  F    LP T++  A K   ++ +AAA+D+  AT  + AP   LP +P A A   Q+ + P  G G+SAA KLLA+MT+REE + +R    +L FRLK HLD+GS+S R VAA V  VM SLTG T+ ELVWRTFL
Sbjct:    1 MSSSAFVPTL-VLSSKLSKRVKP------LSPTPPAQLAIRLHPIPTP-------QRTCATPPSIPPSPPAKPSRILLWLQSDLRISDNAALVQAAQ---HASVPGGALIPLRF--HTVDPIANSIASELAAHLSSLGSTLLNVLGNPEALLPEICNKLHLHAVYYNRHPRPDISCTLHKR-VTTALQNAGIHVEHFDSSTLPTTQSFNASKSPSLQTVAAAIDNKGATTHTAAP-DRLPHLPPAAATIKQVQLPPNRGAGTSAAMKLLAQMTKREENNFSRNARCELVFRLKPHLDYGSVSPRMVAATVFNVMKSLTGRTYEELVWRTFL 310
The following BLAST results are available for this feature:
BLAST of Gchil7284.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J4I4_9FLOR3.500e-4842.30Deoxyribodipyrimidine photo-lyase n=1 Tax=Gracilar... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014729Rossmann-like alpha/beta/alpha sandwich foldGENE3D3.40.50.620HUPscoord: 57..188
e-value: 1.0E-10
score: 43.5
NoneNo IPR availableGENE3D1.25.40.80coord: 189..329
e-value: 7.9E-6
score: 28.1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 16..20
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 21..338
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..4
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 5..15
IPR006050DNA photolyase, N-terminalPFAMPF00875DNA_photolyasecoord: 75..193
e-value: 1.2E-10
score: 41.6
IPR006050DNA photolyase, N-terminalPROSITEPS51645PHR_CRY_ALPHA_BETAcoord: 72..193
score: 13.431851
IPR036155Cryptochrome/photolyase, N-terminal domain superfamilySUPERFAMILY52425Cryptochrome/photolyase, N-terminal domaincoord: 73..193

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:954402..955418 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7284.t1Gchil7284.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004441_pilon 954402..955418 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7284.t1 ID=Gchil7284.t1|Name=Gchil7284.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=339bp
MSRPAFVPTLPACSARRAIAATPHAARQTIATTTPLHAAIAHSSYPTPLP
ISQLQAPTQLRPPRAAPLPPSSRILLWMDGAQRVHDNVALTAAARATRHA
PDAALVPVLLAPHSPPPALAAELRAALQTLGSDLLCKTAQPTRELPALCA
RLRLHAVYFVRAAYGQLARHQRQAESALRRAGVHVHSFAPDVLPVTRASE
AKRLRVRDLAAAVDSVKATERSQAPPSSLPAVPTAVARETQLCVTPRVGG
GSSAAFKLLARMTRREELSHARRLPDQLAFRLKLHLDHGSISMRTVAARV
AAVMGSLTGSTFHELVWRTFLAASHSNTRAPQRALTSA*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014729Rossmann-like_a/b/a_fold
IPR006050DNA_photolyase_N
IPR036155Crypto/Photolyase_N_sf