Gchil7284.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7284.t1
Unique NameGchil7284.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length339
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:954402..955418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7284Gchil7284Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 954402..955418 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7284.t1.stop1Gchil7284.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 954402..954404 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7284.t1.CDS1Gchil7284.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 954402..955418 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7284.t1.exon1Gchil7284.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 954402..955418 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7284.t1.start1Gchil7284.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 955416..955418 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7284.t1Gchil7284.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 954402..955418 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7284.t1 ID=Gchil7284.t1|Name=Gchil7284.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=339bp
MSRPAFVPTLPACSARRAIAATPHAARQTIATTTPLHAAIAHSSYPTPLP
ISQLQAPTQLRPPRAAPLPPSSRILLWMDGAQRVHDNVALTAAARATRHA
PDAALVPVLLAPHSPPPALAAELRAALQTLGSDLLCKTAQPTRELPALCA
RLRLHAVYFVRAAYGQLARHQRQAESALRRAGVHVHSFAPDVLPVTRASE
AKRLRVRDLAAAVDSVKATERSQAPPSSLPAVPTAVARETQLCVTPRVGG
GSSAAFKLLARMTRREELSHARRLPDQLAFRLKLHLDHGSISMRTVAARV
AAVMGSLTGSTFHELVWRTFLAASHSNTRAPQRALTSA*
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spliced messenger RNA

>Gchil7284.t1 ID=Gchil7284.t1|Name=Gchil7284.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00004441_pilon:954402..955418- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGCGCCCCGCCTTCGTCCCTACGCTGCCCGCATGCTCCGCACGCCG
CGCGATCGCCGCAACACCGCACGCCGCGCGTCAAACCATAGCAACCACCA
CCCCGTTACACGCCGCAATCGCACATTCATCATATCCCACCCCACTGCCC
ATCTCGCAACTGCAAGCACCCACACAATTGCGTCCCCCGCGCGCCGCGCC
GTTGCCGCCGTCATCCCGCATTCTGCTATGGATGGACGGAGCGCAGCGTG
TGCACGACAACGTCGCCCTAACAGCAGCCGCCCGTGCCACGCGTCACGCC
CCTGACGCCGCCCTCGTGCCCGTGTTATTGGCCCCGCATTCACCGCCGCC
CGCACTCGCCGCAGAGTTGCGCGCAGCCCTGCAGACGCTTGGTTCAGATC
TGTTGTGCAAGACGGCGCAACCGACGCGCGAATTACCCGCCTTATGTGCG
CGACTACGTCTTCACGCCGTGTACTTTGTGCGCGCGGCCTACGGACAATT
GGCGCGACACCAACGTCAGGCGGAGAGCGCGTTACGACGCGCCGGCGTTC
ACGTGCACAGTTTTGCGCCGGATGTGTTGCCCGTCACACGCGCTTCGGAA
GCAAAGCGCCTGAGAGTACGTGATCTCGCTGCCGCCGTGGACAGCGTTAA
AGCCACGGAGCGCTCGCAAGCGCCGCCAAGCAGTCTGCCGGCCGTGCCGA
CGGCCGTGGCGCGCGAGACACAGCTTTGTGTGACGCCGCGCGTGGGCGGT
GGCAGTAGCGCCGCCTTCAAGCTGTTGGCGCGCATGACGCGCCGCGAGGA
GTTGAGCCATGCGCGTCGTCTGCCCGATCAGCTCGCATTCCGTCTCAAGC
TGCATCTGGACCATGGCTCCATTTCGATGCGCACCGTGGCGGCGCGCGTG
GCCGCCGTCATGGGCTCCCTCACCGGCTCGACCTTCCACGAGCTCGTGTG
GAGGACGTTCCTCGCCGCCTCACACTCCAACACACGCGCGCCGCAGCGTG
CGCTCACGAGCGCCTAG
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protein sequence of Gchil7284.t1

>Gchil7284.t1 ID=Gchil7284.t1|Name=Gchil7284.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=339bp
MSRPAFVPTLPACSARRAIAATPHAARQTIATTTPLHAAIAHSSYPTPLP
ISQLQAPTQLRPPRAAPLPPSSRILLWMDGAQRVHDNVALTAAARATRHA
PDAALVPVLLAPHSPPPALAAELRAALQTLGSDLLCKTAQPTRELPALCA
RLRLHAVYFVRAAYGQLARHQRQAESALRRAGVHVHSFAPDVLPVTRASE
AKRLRVRDLAAAVDSVKATERSQAPPSSLPAVPTAVARETQLCVTPRVGG
GSSAAFKLLARMTRREELSHARRLPDQLAFRLKLHLDHGSISMRTVAARV
AAVMGSLTGSTFHELVWRTFLAASHSNTRAPQRALTSA*
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mRNA from alignment at tig00004441_pilon:954402..955418-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7284.t1 ID=Gchil7284.t1|Name=Gchil7284.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00004441_pilon:954402..955418- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCGCCCCGCCTTCGTCCCTACGCTGCCCGCATGCTCCGCACGCCG
CGCGATCGCCGCAACACCGCACGCCGCGCGTCAAACCATAGCAACCACCA
CCCCGTTACACGCCGCAATCGCACATTCATCATATCCCACCCCACTGCCC
ATCTCGCAACTGCAAGCACCCACACAATTGCGTCCCCCGCGCGCCGCGCC
GTTGCCGCCGTCATCCCGCATTCTGCTATGGATGGACGGAGCGCAGCGTG
TGCACGACAACGTCGCCCTAACAGCAGCCGCCCGTGCCACGCGTCACGCC
CCTGACGCCGCCCTCGTGCCCGTGTTATTGGCCCCGCATTCACCGCCGCC
CGCACTCGCCGCAGAGTTGCGCGCAGCCCTGCAGACGCTTGGTTCAGATC
TGTTGTGCAAGACGGCGCAACCGACGCGCGAATTACCCGCCTTATGTGCG
CGACTACGTCTTCACGCCGTGTACTTTGTGCGCGCGGCCTACGGACAATT
GGCGCGACACCAACGTCAGGCGGAGAGCGCGTTACGACGCGCCGGCGTTC
ACGTGCACAGTTTTGCGCCGGATGTGTTGCCCGTCACACGCGCTTCGGAA
GCAAAGCGCCTGAGAGTACGTGATCTCGCTGCCGCCGTGGACAGCGTTAA
AGCCACGGAGCGCTCGCAAGCGCCGCCAAGCAGTCTGCCGGCCGTGCCGA
CGGCCGTGGCGCGCGAGACACAGCTTTGTGTGACGCCGCGCGTGGGCGGT
GGCAGTAGCGCCGCCTTCAAGCTGTTGGCGCGCATGACGCGCCGCGAGGA
GTTGAGCCATGCGCGTCGTCTGCCCGATCAGCTCGCATTCCGTCTCAAGC
TGCATCTGGACCATGGCTCCATTTCGATGCGCACCGTGGCGGCGCGCGTG
GCCGCCGTCATGGGCTCCCTCACCGGCTCGACCTTCCACGAGCTCGTGTG
GAGGACGTTCCTCGCCGCCTCACACTCCAACACACGCGCGCCGCAGCGTG
CGCTCACGAGCGCCTAG
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Coding sequence (CDS) from alignment at tig00004441_pilon:954402..955418-

>Gchil7284.t1 ID=Gchil7284.t1|Name=Gchil7284.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1017bp|location=Sequence derived from alignment at tig00004441_pilon:954402..955418- (Gracilaria chilensis NLEC103_M9 male)
ATGTCGCGCCCCGCCTTCGTCCCTACGCTGCCCGCATGCTCCGCACGCCG
CGCGATCGCCGCAACACCGCACGCCGCGCGTCAAACCATAGCAACCACCA
CCCCGTTACACGCCGCAATCGCACATTCATCATATCCCACCCCACTGCCC
ATCTCGCAACTGCAAGCACCCACACAATTGCGTCCCCCGCGCGCCGCGCC
GTTGCCGCCGTCATCCCGCATTCTGCTATGGATGGACGGAGCGCAGCGTG
TGCACGACAACGTCGCCCTAACAGCAGCCGCCCGTGCCACGCGTCACGCC
CCTGACGCCGCCCTCGTGCCCGTGTTATTGGCCCCGCATTCACCGCCGCC
CGCACTCGCCGCAGAGTTGCGCGCAGCCCTGCAGACGCTTGGTTCAGATC
TGTTGTGCAAGACGGCGCAACCGACGCGCGAATTACCCGCCTTATGTGCG
CGACTACGTCTTCACGCCGTGTACTTTGTGCGCGCGGCCTACGGACAATT
GGCGCGACACCAACGTCAGGCGGAGAGCGCGTTACGACGCGCCGGCGTTC
ACGTGCACAGTTTTGCGCCGGATGTGTTGCCCGTCACACGCGCTTCGGAA
GCAAAGCGCCTGAGAGTACGTGATCTCGCTGCCGCCGTGGACAGCGTTAA
AGCCACGGAGCGCTCGCAAGCGCCGCCAAGCAGTCTGCCGGCCGTGCCGA
CGGCCGTGGCGCGCGAGACACAGCTTTGTGTGACGCCGCGCGTGGGCGGT
GGCAGTAGCGCCGCCTTCAAGCTGTTGGCGCGCATGACGCGCCGCGAGGA
GTTGAGCCATGCGCGTCGTCTGCCCGATCAGCTCGCATTCCGTCTCAAGC
TGCATCTGGACCATGGCTCCATTTCGATGCGCACCGTGGCGGCGCGCGTG
GCCGCCGTCATGGGCTCCCTCACCGGCTCGACCTTCCACGAGCTCGTGTG
GAGGACGTTCCTCGCCGCCTCACACTCCAACACACGCGCGCCGCAGCGTG
CGCTCACGAGCGCCTAG
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