Gchil7241.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7241.t1
Unique NameGchil7241.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length116
Homology
BLAST of Gchil7241.t1 vs. uniprot
Match: A0A2V3J4Z2_9FLOR (Calvin cycle protein CP12, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J4Z2_9FLOR)

HSP 1 Score: 156 bits (395), Expect = 2.400e-47
Identity = 83/116 (71.55%), Postives = 94/116 (81.03%), Query Frame = 0
Query:    1 MAFVSSLSLASRVRAPTLAKCSPFR-LSVRAAPARRAALVMNLDTIQVKIQEEIKKAEEATKQFGRDSKEAALAWDVVEELEAEASHMKVDKGKPDPLEQFCEDSPDADECRVYDN 115
            MAFV+S+S+ASR    +  KCS FR +  R A   R AL+MNLDTIQ KIQEEIKKAE AT QFG+ SKEAALAWD+VEELEAEASHMK  KG PDPLE++CED+PDADECRVYDN
Sbjct:    1 MAFVNSVSVASRAPVFSPLKCSSFRGVQFRVASTPRPALLMNLDTIQTKIQEEIKKAEAATAQFGKSSKEAALAWDIVEELEAEASHMKAKKGTPDPLEEYCEDAPDADECRVYDN 116          
BLAST of Gchil7241.t1 vs. uniprot
Match: R7Q2J1_CHOCR (CP12 protein, chloroplast, involves in the regulation of CO2 assimilation (Fragment) n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q2J1_CHOCR)

HSP 1 Score: 140 bits (353), Expect = 9.160e-41
Identity = 78/116 (67.24%), Postives = 94/116 (81.03%), Query Frame = 0
Query:    1 MAFVSSLSLASRVRAPTLAKCSPFRLSVR-AAPARRAALVMNLDTIQVKIQEEIKKAEEATKQFGRDSKEAALAWDVVEELEAEASHMKVDKGKPDPLEQFCEDSPDADECRVYDN 115
            MAFVSS+S+A R  + T A  S    S+R   P  R AL MNLDTIQVKIQEE+KKA++AT+QFG+ SKEAALAWDVVEELEAEASH+K +KG  DPLE+FCE+SP+ADECRVY++
Sbjct:   15 MAFVSSVSVAVRPASVTPAVSSFKGSSLRWTTPKPRVALSMNLDTIQVKIQEEMKKAQDATQQFGKGSKEAALAWDVVEELEAEASHLKANKGSNDPLEKFCEESPEADECRVYED 130          
BLAST of Gchil7241.t1 vs. uniprot
Match: A0A7S1TPK3_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TPK3_9RHOD)

HSP 1 Score: 102 bits (253), Expect = 7.750e-26
Identity = 59/115 (51.30%), Postives = 76/115 (66.09%), Query Frame = 0
Query:    1 MAFVSSLSLASRVRAPTLAKCSPFRLSVRAAPARRAALVMNLDTIQVKIQEEIKKAEEATKQFGRDSKEAALAWDVVEELEAEASHMKVDKGKPDPLEQFCEDSPDADECRVYDN 115
            MAFVS+       ++  +A C     S   + ARR  ++ +L   Q KI   +K+AEEATK +G+ SKEAA+AWD VEELEAEASH K  + K DPLE +CED+P+ADECR YDN
Sbjct:    1 MAFVSTSGAVVSAKSARVAACGQ---SGTRSVARRVVMMSDL---QGKINAAMKEAEEATKTYGKTSKEAAVAWDTVEELEAEASHQKSAEVKKDPLEAYCEDAPEADECRTYDN 109          
BLAST of Gchil7241.t1 vs. uniprot
Match: Q2PC90_GALSU (Small chloroplast protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=Q2PC90_GALSU)

HSP 1 Score: 102 bits (254), Expect = 9.620e-26
Identity = 51/67 (76.12%), Postives = 59/67 (88.06%), Query Frame = 0
Query:   49 IQEEIKKAEEATKQFGRDSKEAALAWDVVEELEAEASHMKVDKGKPDPLEQFCEDSPDADECRVYDN 115
            IQE IKKAEEATK+FGRDSKEAA AWD VEEL+AEASH +V + K DPLE FC++SP+A+ECRVYDN
Sbjct:   64 IQESIKKAEEATKKFGRDSKEAAAAWDAVEELDAEASHQRV-RQKTDPLETFCDESPEAEECRVYDN 129          
BLAST of Gchil7241.t1 vs. uniprot
Match: A0A5J4YIM3_PORPP (Calvin cycle protein CP12, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YIM3_PORPP)

HSP 1 Score: 99.8 bits (247), Expect = 3.020e-25
Identity = 47/69 (68.12%), Postives = 56/69 (81.16%), Query Frame = 0
Query:   47 VKIQEEIKKAEEATKQFGRDSKEAALAWDVVEELEAEASHMKVDKGKPDPLEQFCEDSPDADECRVYDN 115
            VKI + IK AEEAT +FG+ SKEAA+AWD VEELEAEASH K    K DPLE++C+D+P+ADECR YDN
Sbjct:   15 VKISDAIKGAEEATSKFGKGSKEAAVAWDTVEELEAEASHQKASNAKKDPLEEYCDDAPEADECRTYDN 83          
BLAST of Gchil7241.t1 vs. uniprot
Match: A0A1X6NM38_PORUM (CP12 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NM38_PORUM)

HSP 1 Score: 97.1 bits (240), Expect = 8.840e-24
Identity = 60/116 (51.72%), Postives = 74/116 (63.79%), Query Frame = 0
Query:    3 FVSSLSLASRVRAPTLAKCSPFRLS---VRAAPARRAALVMNLDTIQVKIQEEIKKAEEATKQFGRDSKEAALAWDVVEELEAEASHMKVDKGKPDPLEQFCEDSPDADECRVYDN 115
            FVS ++  S  R    A C+    +   V AAP  RA   M +  IQ  IQ EI KA+EA+ +FG+ SKEAA AWD VEELEAEASH K +  K DPLE +CED P+ADECR Y++
Sbjct:    4 FVSGVAAVSSARRAPSAVCTRSSFAGAAVVAAPVVRAT--MRMSNIQETIQTEIAKAKEASDKFGKTSKEAAAAWDAVEELEAEASHQK-NAEKKDPLEAYCEDVPEADECRTYED 116          
BLAST of Gchil7241.t1 vs. uniprot
Match: A0A7J7IC32_9RHOD (CP12 domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IC32_9RHOD)

HSP 1 Score: 90.9 bits (224), Expect = 2.690e-21
Identity = 53/111 (47.75%), Postives = 73/111 (65.77%), Query Frame = 0
Query:    5 SSLSLASRVRAPTLAKCSPFRLSVRAAPARRAALVMNLDTIQVKIQEEIKKAEEATKQFGRDSKEAALAWDVVEELEAEASHMKVDKGKPDPLEQFCEDSPDADECRVYDN 115
            + LS ASR RA   A C   R  + A     A+L M  +++  +I E IK AE+A +++G+ SKEA +AWDVVEELEAE SH    +   DPLEQ+C++ P+ADECRVY++
Sbjct:   13 AKLSSASRSRARA-ASCVG-RPHLVAGTRTLASLRMASESMNTRIDEAIKNAEDAARKYGKGSKEAKVAWDVVEELEAERSHQAAQRQSEDPLEQYCKEVPEADECRVYED 121          
BLAST of Gchil7241.t1 vs. uniprot
Match: M1V6V0_CYAM1 (CP12 protein, chloroplast n=1 Tax=Cyanidioschyzon merolae (strain 10D) TaxID=280699 RepID=M1V6V0_CYAM1)

HSP 1 Score: 90.5 bits (223), Expect = 3.910e-21
Identity = 45/82 (54.88%), Postives = 60/82 (73.17%), Query Frame = 0
Query:   34 RRAALVMNLDTIQVKIQEEIKKAEEATKQFGRDSKEAALAWDVVEELEAEASHMKVDKGKPDPLEQFCEDSPDADECRVYDN 115
            R AAL M  + +  +IQE IK AE+A K++G+ SKEA +AWD VEELEAE SH   +K   DPLE++C + P+ADECRVY++
Sbjct:   41 RVAALRMANEKLNTQIQEAIKNAEDAAKKYGKASKEAKVAWDFVEELEAERSHQAANKQSEDPLEKYCNEVPEADECRVYED 122          
BLAST of Gchil7241.t1 vs. uniprot
Match: K9SFT8_9CYAN (CP12 domain-containing protein n=1 Tax=Pseudanabaena sp. PCC 7367 TaxID=82654 RepID=K9SFT8_9CYAN)

HSP 1 Score: 85.9 bits (211), Expect = 6.770e-20
Identity = 45/74 (60.81%), Postives = 55/74 (74.32%), Query Frame = 0
Query:   42 LDTIQVKIQEEIKKAEEATKQFGRDSKEAALAWDVVEELEAEASHMKVDKGKPDPLEQFCEDSPDADECRVYDN 115
            +  IQ KIQEE++ A EA    G DSKE A AWD VEEL+AEASH + +K K + LEQFC+D+PDA ECRVYD+
Sbjct:    1 MSNIQNKIQEELESAREACDTTGADSKECAAAWDAVEELQAEASHQREEKPK-NSLEQFCDDNPDAAECRVYDD 73          
BLAST of Gchil7241.t1 vs. uniprot
Match: UPI000346E564 (Calvin cycle protein CP12 n=1 Tax=Pseudanabaena sp. PCC 6802 TaxID=118173 RepID=UPI000346E564)

HSP 1 Score: 82.0 bits (201), Expect = 2.290e-18
Identity = 42/71 (59.15%), Postives = 55/71 (77.46%), Query Frame = 0
Query:   45 IQVKIQEEIKKAEEATKQFGRDSKEAALAWDVVEELEAEASHMKVDKGKPDPLEQFCEDSPDADECRVYDN 115
            IQ KIQEE++ A EA +  G  SKE A AWD VEEL+AEASH K +KGK + L+Q+C+D+PDA ECR+Y++
Sbjct:    5 IQEKIQEELQGAREACEANGPGSKECAAAWDAVEELQAEASHQKQEKGK-NSLQQYCDDNPDAAECRIYED 74          
The following BLAST results are available for this feature:
BLAST of Gchil7241.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J4Z2_9FLOR2.400e-4771.55Calvin cycle protein CP12, chloroplastic n=1 Tax=G... [more]
R7Q2J1_CHOCR9.160e-4167.24CP12 protein, chloroplast, involves in the regulat... [more]
A0A7S1TPK3_9RHOD7.750e-2651.30Hypothetical protein n=1 Tax=Erythrolobus australi... [more]
Q2PC90_GALSU9.620e-2676.12Small chloroplast protein n=1 Tax=Galdieria sulphu... [more]
A0A5J4YIM3_PORPP3.020e-2568.12Calvin cycle protein CP12, chloroplastic n=1 Tax=P... [more]
A0A1X6NM38_PORUM8.840e-2451.72CP12 domain-containing protein n=1 Tax=Porphyra um... [more]
A0A7J7IC32_9RHOD2.690e-2147.75CP12 domain-containing protein n=1 Tax=Cyanidiococ... [more]
M1V6V0_CYAM13.910e-2154.88CP12 protein, chloroplast n=1 Tax=Cyanidioschyzon ... [more]
K9SFT8_9CYAN6.770e-2060.81CP12 domain-containing protein n=1 Tax=Pseudanabae... [more]
UPI000346E5642.290e-1859.15Calvin cycle protein CP12 n=1 Tax=Pseudanabaena sp... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 42..62
NoneNo IPR availablePFAMPF02672CP12coord: 45..114
e-value: 1.1E-25
score: 90.1
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..104
NoneNo IPR availablePANTHERPTHR33921:SF15CALVIN CYCLE PROTEIN CP12-2, CHLOROPLASTICcoord: 39..115
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..115
IPR003823CP12 domainSMARTSM01093CP12_2coord: 45..115
e-value: 2.7E-28
score: 110.0
IPR039314Calvin cycle protein CP12-likePANTHERPTHR33921CALVIN CYCLE PROTEIN CP12-2, CHLOROPLASTICcoord: 39..115

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:843592..844026 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7241.t1Gchil7241.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004441_pilon 843592..844026 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7241.t1 ID=Gchil7241.t1|Name=Gchil7241.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=116bp
MAFVSSLSLASRVRAPTLAKCSPFRLSVRAAPARRAALVMNLDTIQVKIQ
EEIKKAEEATKQFGRDSKEAALAWDVVEELEAEASHMKVDKGKPDPLEQF
CEDSPDADECRVYDN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003823CP12_dom
IPR039314CP12-like