Gchil7241.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7241.t1
Unique NameGchil7241.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length116
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004441_piloncontigtig00004441_pilon:843592..844026 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005706707.1
PFAMsCP12
Max annot lvl2759|Eukaryota
Evalue1.67e-26
EggNOG OGs2DAQB@1|root,2SCXW@2759|Eukaryota
DescriptionCP12
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7241Gchil7241Gracilaria chilensis NLEC103_M9 malegenetig00004441_pilon 843592..844026 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7241.t1Gchil7241.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004441_pilon 843592..844026 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7241.t1.start1Gchil7241.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004441_pilon 843592..843594 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7241.t1.CDS1Gchil7241.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 843592..843651 +
Gchil7241.t1.CDS2Gchil7241.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004441_pilon 843739..844026 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7241.t1.exon1Gchil7241.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 843592..843651 +
Gchil7241.t1.exon2Gchil7241.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004441_pilon 843739..844026 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7241.t1.intron1Gchil7241.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004441_pilon 843652..843738 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7241.t1.stop1Gchil7241.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004441_pilon 844024..844026 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7241.t1 ID=Gchil7241.t1|Name=Gchil7241.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=116bp
MAFVSSLSLASRVRAPTLAKCSPFRLSVRAAPARRAALVMNLDTIQVKIQ
EEIKKAEEATKQFGRDSKEAALAWDVVEELEAEASHMKVDKGKPDPLEQF
CEDSPDADECRVYDN*
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spliced messenger RNA

>Gchil7241.t1 ID=Gchil7241.t1|Name=Gchil7241.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=348bp|location=Sequence derived from alignment at tig00004441_pilon:843592..844026+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTTTGTCTCGTCTCTTTCGCTGGCTTCGCGCGTGCGCGCCCCCAC
CCTCGCTAAGTGTTCGCCGTTCCGACTGAGCGTGCGCGCTGCGCCTGCGC
GCCGAGCTGCGCTCGTCATGAACTTGGACACCATCCAGGTTAAGATTCAG
GAGGAAATCAAGAAGGCCGAGGAGGCGACCAAGCAGTTTGGGCGCGACTC
CAAGGAGGCTGCGCTGGCTTGGGATGTGGTCGAGGAGCTGGAGGCTGAGG
CGTCGCACATGAAGGTGGACAAGGGCAAACCAGACCCGTTGGAGCAGTTC
TGCGAGGACTCGCCCGACGCGGACGAGTGCCGCGTCTACGACAATTAG
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protein sequence of Gchil7241.t1

>Gchil7241.t1 ID=Gchil7241.t1|Name=Gchil7241.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=116bp
MAFVSSLSLASRVRAPTLAKCSPFRLSVRAAPARRAALVMNLDTIQVKIQ
EEIKKAEEATKQFGRDSKEAALAWDVVEELEAEASHMKVDKGKPDPLEQF
CEDSPDADECRVYDN*
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mRNA from alignment at tig00004441_pilon:843592..844026+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7241.t1 ID=Gchil7241.t1|Name=Gchil7241.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=435bp|location=Sequence derived from alignment at tig00004441_pilon:843592..844026+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTTTGTCTCGTCTCTTTCGCTGGCTTCGCGCGTGCGCGCCCCCAC
CCTCGCTAAGGTAAGCTGCACGCTCTCCGACGACTGCGCGGCCCCGCGGC
GGAGCACCGTTTCTGACCGAGTGCGCTCGATGTGCGTTGCGTCCTAGTGT
TCGCCGTTCCGACTGAGCGTGCGCGCTGCGCCTGCGCGCCGAGCTGCGCT
CGTCATGAACTTGGACACCATCCAGGTTAAGATTCAGGAGGAAATCAAGA
AGGCCGAGGAGGCGACCAAGCAGTTTGGGCGCGACTCCAAGGAGGCTGCG
CTGGCTTGGGATGTGGTCGAGGAGCTGGAGGCTGAGGCGTCGCACATGAA
GGTGGACAAGGGCAAACCAGACCCGTTGGAGCAGTTCTGCGAGGACTCGC
CCGACGCGGACGAGTGCCGCGTCTACGACAATTAG
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Coding sequence (CDS) from alignment at tig00004441_pilon:843592..844026+

>Gchil7241.t1 ID=Gchil7241.t1|Name=Gchil7241.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=348bp|location=Sequence derived from alignment at tig00004441_pilon:843592..844026+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTTTGTCTCGTCTCTTTCGCTGGCTTCGCGCGTGCGCGCCCCCAC
CCTCGCTAAGTGTTCGCCGTTCCGACTGAGCGTGCGCGCTGCGCCTGCGC
GCCGAGCTGCGCTCGTCATGAACTTGGACACCATCCAGGTTAAGATTCAG
GAGGAAATCAAGAAGGCCGAGGAGGCGACCAAGCAGTTTGGGCGCGACTC
CAAGGAGGCTGCGCTGGCTTGGGATGTGGTCGAGGAGCTGGAGGCTGAGG
CGTCGCACATGAAGGTGGACAAGGGCAAACCAGACCCGTTGGAGCAGTTC
TGCGAGGACTCGCCCGACGCGGACGAGTGCCGCGTCTACGACAATTAG
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