Gchil2013.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2013.t1
Unique NameGchil2013.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length72
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1705716..1706030 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2013Gchil2013Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1705716..1706030 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2013.t1Gchil2013.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1705716..1706030 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2013.t1.start1Gchil2013.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1705716..1705718 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2013.t1.CDS1Gchil2013.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1705716..1705778 +
Gchil2013.t1.CDS2Gchil2013.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1705878..1706030 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2013.t1.exon1Gchil2013.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1705716..1705778 +
Gchil2013.t1.exon2Gchil2013.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1705878..1706030 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2013.t1.intron1Gchil2013.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1705779..1705877 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2013.t1.stop1Gchil2013.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1706028..1706030 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2013.t1 ID=Gchil2013.t1|Name=Gchil2013.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=72bp
MGSTSDPRSSPSAELQLERDQRLLFLSLLSIFLISVLSVVIAWIRYGKEV
IEALTADSNQRPSKSYRHKHE*
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spliced messenger RNA

>Gchil2013.t1 ID=Gchil2013.t1|Name=Gchil2013.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=216bp|location=Sequence derived from alignment at tig00004439_pilon:1705716..1706030+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGTAGCACAAGTGACCCGCGCTCATCTCCCTCAGCCGAACTCCAGCT
TGAAAGGGATCAGCGGCTGTTGTTTCTATCACTGCTCTCCATATTTCTTA
TATCCGTATTGAGTGTGGTAATTGCATGGATTCGATACGGCAAGGAGGTC
ATCGAAGCTTTGACAGCAGATTCGAATCAAAGACCGTCAAAAAGTTACCG
ACATAAGCACGAATGA
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protein sequence of Gchil2013.t1

>Gchil2013.t1 ID=Gchil2013.t1|Name=Gchil2013.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=72bp
MGSTSDPRSSPSAELQLERDQRLLFLSLLSIFLISVLSVVIAWIRYGKEV
IEALTADSNQRPSKSYRHKHE*
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mRNA from alignment at tig00004439_pilon:1705716..1706030+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2013.t1 ID=Gchil2013.t1|Name=Gchil2013.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=315bp|location=Sequence derived from alignment at tig00004439_pilon:1705716..1706030+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTAGCACAAGTGACCCGCGCTCATCTCCCTCAGCCGAACTCCAGCT
TGAAAGGGATCAGGTACGTCTCCTTTCACTTCTTACGAAACTACGAGTGG
AGAAAATAATCGTCTTCGAGAATTTGTTCTGAACAATGCCCAACCACTTT
TACGGAAAGAAGCGGCTGTTGTTTCTATCACTGCTCTCCATATTTCTTAT
ATCCGTATTGAGTGTGGTAATTGCATGGATTCGATACGGCAAGGAGGTCA
TCGAAGCTTTGACAGCAGATTCGAATCAAAGACCGTCAAAAAGTTACCGA
CATAAGCACGAATGA
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Coding sequence (CDS) from alignment at tig00004439_pilon:1705716..1706030+

>Gchil2013.t1 ID=Gchil2013.t1|Name=Gchil2013.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=216bp|location=Sequence derived from alignment at tig00004439_pilon:1705716..1706030+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGTAGCACAAGTGACCCGCGCTCATCTCCCTCAGCCGAACTCCAGCT
TGAAAGGGATCAGCGGCTGTTGTTTCTATCACTGCTCTCCATATTTCTTA
TATCCGTATTGAGTGTGGTAATTGCATGGATTCGATACGGCAAGGAGGTC
ATCGAAGCTTTGACAGCAGATTCGAATCAAAGACCGTCAAAAAGTTACCG
ACATAAGCACGAATGA
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