Gchil2002.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil2002.t1
Unique NameGchil2002.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length340
Homology
BLAST of Gchil2002.t1 vs. uniprot
Match: A0A2V3IFS2_9FLOR (U1 small nuclear ribonucleoprotein 70 kDa n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFS2_9FLOR)

HSP 1 Score: 351 bits (901), Expect = 1.090e-114
Identity = 183/339 (53.98%), Postives = 236/339 (69.62%), Query Frame = 0
Query:    3 NDASFPVSDNSIEPGFSPLVCASHNPDYTLWQPDALISLGVRTLLTNVSNEGIENELEQAQLQKKVLQYLTVSTENVSATGTTFLAISVDALGNFTRLSCIAKIIPSPDWFIGLPSIDLCT-NGSFTREREGN-LFGWDGGIDNSEAYDESVPQPTSEAVPVLRAQLASPGGYGRAIVKQTQLPKPSPTTPVAANTDNNSAPTPTQVPNPFVPEEVSEQSFFEPEPDTKICVDADALEHLPPNALLYTEHRLARVLCDPFASCATPGHMVSFRGVPMMMMSYCRITRCTKQQMFVNSPRYKPAIRIPTRSPHLQFTALAARYSTPFEEYIMSTALRIGL 339
            +DA+FP +DNS+ PGFSPLVCA HN ++TLW  +  IS  VRTLL NV+NE IE  L +A    +VLQY  V TEN +AT  T +A+SV A GNFT +SCIAKIIPSPDWF+GL ++  C  NGSF    +G  LFGWDGGID +E Y ++ P   SEA+ V  A L +P GYG A +  T++P PSP+ P   ++      +    P+PF+P +        P+P+  +C+DA+AL H P N+LLY  H++ARVLCD +ASCAT GHMV + G PMMM SYCR+T+CT+Q M+VNSPRY  A+RIP+ SP LQFTALAARY+T  EE +MS A+R+GL
Sbjct:  199 SDAAFPTTDNSLIPGFSPLVCAVHNSNFTLWAKEERISPAVRTLLVNVTNELIEKRLNRAIEDHQVLQYQIVGTENATATAVTSVALSVTAAGNFTLISCIAKIIPSPDWFVGLTNVQTCQQNGSFIDVPQGGTLFGWDGGIDTAETYTDTSPLLESEAIVVKPAILEAPEGYGTASISPTEIPTPSPSPPXX-DSPXXXXXSKDLPPSPFIPTQTP-----IPKPNA-VCIDANALAHFPRNSLLYANHQMARVLCDTYASCATHGHMVYYLGKPMMMSSYCRLTQCTQQLMYVNSPRYSRALRIPSNSPQLQFTALAARYATDIEENLMSLAIRLGL 530          
BLAST of Gchil2002.t1 vs. uniprot
Match: A0A2V3IQ05_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ05_9FLOR)

HSP 1 Score: 133 bits (335), Expect = 1.680e-33
Identity = 61/110 (55.45%), Postives = 78/110 (70.91%), Query Frame = 0
Query:  230 ICVDADALEHLPPNALLYTEHRLARVLCDPFASCATPGHMVSFRGVPMMMMSYCRITRCTKQQMFVNSPRYKPAIRIPTRSPHLQFTALAARYSTPFEEYIMSTALRIGL 339
            +C+ A +L HL    L+Y  HR+ARVLCD   SCATPGH+V F GVPMMM SYC    C  + M VNSPRY  A+R+P+ +  LQFTA AARY T  EE++++TA+R+GL
Sbjct:  144 VCIAARSLAHLSQRDLVYARHRVARVLCDSSGSCATPGHIVLFHGVPMMMTSYCEAVSCVAKIMHVNSPRYTRAVRVPSLTDGLQFTAFAARYQTTTEEHLLATAIRLGL 253          
BLAST of Gchil2002.t1 vs. uniprot
Match: R7QLS2_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QLS2_CHOCR)

HSP 1 Score: 122 bits (306), Expect = 9.900e-30
Identity = 64/170 (37.65%), Postives = 102/170 (60.00%), Query Frame = 0
Query:  177 IVKQTQLPKPSPTTPVAANTDNNSAPTPTQVPNPFVPEEVSEQS-------FFEPEPDTKICVDADALEHLPPNALLYTEHRLARVLCDPFASCATPGHMVSFRGVPMMMMSYCRITRCTKQQMFVNSPRYKPAIRIPTRSPHLQFTALAARYSTPFEEYIMSTALRIGL 339
            +V    +P P P      +++ + + T +  P P +PE +S +S                +C+DA AL+H+    L+++ H L  VLCD + SCAT GH+V +RG  MMM +YC +  C+K+++ VNSPRY+  +R+P+R+  L+FT+LAARYST  EE +++  + IGL
Sbjct:   47 VVIDVGIPSPPP-----GSSELDGSDTLSTSPEPSLPEVISSESTSXXXXXXXXXXXXXVVCIDAAALDHVARQDLVFSNHVLKAVLCDMYGSCATDGHIVEYRGHAMMMRTYCDLVGCSKREVEVNSPRYRRRLRVPSRTEGLEFTSLAARYSTRVEERMLAIVVHIGL 211          
BLAST of Gchil2002.t1 vs. uniprot
Match: A0A2V3J1H7_9FLOR (Early nodulin-12A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1H7_9FLOR)

HSP 1 Score: 126 bits (317), Expect = 7.620e-29
Identity = 60/130 (46.15%), Postives = 83/130 (63.85%), Query Frame = 0
Query:  210 PFVPEEVSEQSFFEPEPDTKICVDADALEHLPPNALLYTEHRLARVLCDPFASCATPGHMVSFRGVPMMMMSYCRITRCTKQQMFVNSPRYKPAIRIPTRSPHLQFTALAARYSTPFEEYIMSTALRIGL 339
            P + E V  +    P P+ +IC+    L H+    L+Y+ HR+ARVLCD  +SCATPGH+V ++G  MMM  YC ITRC ++ M VNSPRY  A R+ + +  L FTA AARY +  EE+++   +RIGL
Sbjct:  422 PSIAEGVDGEGEPTPSPEDEICIGVHHLSHMAYKDLIYSSHRVARVLCDKSSSCATPGHIVLYKGEAMMMRKYCTITRCVQKIMRVNSPRYSRAARVDSHTEDLSFTAFAARYESAAEEHLLRAFVRIGL 551          
BLAST of Gchil2002.t1 vs. uniprot
Match: R7Q6G8_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q6G8_CHOCR)

HSP 1 Score: 113 bits (282), Expect = 7.730e-27
Identity = 59/116 (50.86%), Postives = 77/116 (66.38%), Query Frame = 0
Query:  224 PEPDTKICVDADALEHLPPNALLYTEHRLARVLCDPFASCATPGHMVSFRGVPMMMMSYCRITRCTKQQMFVNSPRYKPAIRIPTRSPHLQFTALAARYSTPFEEYIMSTALRIGL 339
            PEP   +CVDA+AL +     ++Y +H  A+VLCD   SCAT  HMV +RGV MMM SYC+  +C +  + VNSPRYK  +RI +R+  LQFTA AARY T  EE  +  A+R+GL
Sbjct:   48 PEP---LCVDAEALTNADVQ-MVYRKHFYAKVLCDSERSCATAAHMVVWRGVAMMMRSYCQRVQCEETALHVNSPRYKKKVRIQSRTEGLQFTAFAARYGTKAEELAIGVAVRLGL 159          
BLAST of Gchil2002.t1 vs. uniprot
Match: A0A2V3ISB7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ISB7_9FLOR)

HSP 1 Score: 101 bits (251), Expect = 3.440e-21
Identity = 50/109 (45.87%), Postives = 65/109 (59.63%), Query Frame = 0
Query:  231 CVDADALEHLPPNALLYTEHRLARVLCDPFASCATPGHMVSFRGVPMMMMSYCRITRCTKQQMFVNSPRYKPAIRIPTRSPHLQFTALAARYSTPFEEYIMSTALRIGL 339
            CV    L+ L  N LL+  HR  +VLCD   SCAT GH+V +RG+PM M SYC+   C+   M VNSPRY   +R+ + S  LQ T  AAR+ T  EE  +   +R+GL
Sbjct:  166 CVAVKHLQELERNELLFATHRTTKVLCDGKLSCATAGHIVVYRGLPMSMKSYCQHVGCSMNMMEVNSPRYVWGLRMKSHSVELQLTVFAARFETMVEEAFLVCLVRLGL 274          
BLAST of Gchil2002.t1 vs. uniprot
Match: A0A151DU16_9ARCH (Spondin domain-containing protein n=1 Tax=Thermoplasmatales archaeon SG8-52-4 TaxID=1803819 RepID=A0A151DU16_9ARCH)

HSP 1 Score: 82.4 bits (202), Expect = 5.320e-14
Identity = 53/163 (32.52%), Postives = 82/163 (50.31%), Query Frame = 0
Query:   16 PGFSPLVCASHNPDYTLWQPDALISLGVRTLLTNVSNEGIENELEQAQLQKKVLQYLTVSTENVSATGTTFLAISVDALGNFTRLSCIAKIIPSPDWFIGLPSIDLCTNGSFTREREGNLFGWDGGIDNSEAYDESVPQPTSEAVPVLRAQLASPGGYGRAIV 178
            P FS L+ ASHN     W    L S G++ +    S   ++ E+ +A +Q+K  + L+      S+ G+  L   V     F  +S ++ I PSPDWF+G+ S++L  N SF +E+   L+ +D G D+   Y  S  +PT   VP+      SP  Y  +IV
Sbjct:  183 PHFSGLIGASHNEKIRFWGNGELASSGIKNMAETGSKSPLDKEINRAIIQRKAFKLLS-GDGIASSPGSVELIFKVSE--RFPLVSLVSMIAPSPDWFVGVDSLNLFENDSFIKEKTVVLYAYDSGTDSGTNYT-SPDEPTVPPVPIYLID-TSPFLYNNSIV 340          
BLAST of Gchil2002.t1 vs. uniprot
Match: A0A6P8QUZ2_GEOSA (spondin-2-like n=1 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8QUZ2_GEOSA)

HSP 1 Score: 80.1 bits (196), Expect = 5.020e-13
Identity = 50/155 (32.26%), Postives = 84/155 (54.19%), Query Frame = 0
Query:    6 SFPVSDNSIEPG--FSPLVCASHNPDYTLWQPDALISLGVRTLLTNVSNEGIENELEQAQLQKKVLQYLTVSTENVSATGTTFLAISVDALGNFTRLSCIAKIIPSPDWFIGLPSIDLCTNGSFTREREGNLFGWDGGIDNSEAYDE----SVPQ 154
            SFP    +  P   +S L    HN D+ LW   +L+S GV+  + +  ++ + +E+E+  L+ KV  +       ++  G T + I+++   ++  +S + KIIPSPDWF+G+ ++DLC NG +      NLF WD G D+  A+      +VPQ
Sbjct:   49 SFPKQYPTYRPHAQWSQLFGCIHNSDFELWAEGSLVSPGVQVFVEHGKSQLLIHEIER--LKDKVQTWFQADPI-LTGEGNTSIVITLEK--SYPLISVLVKIIPSPDWFVGVNALDLCENGKWKNNVLYNLFPWDAGTDSGFAFSSPNFVTVPQ 198          
BLAST of Gchil2002.t1 vs. uniprot
Match: I3N6P4_ICTTR (Spondin 2 n=6 Tax=Sciuridae TaxID=55153 RepID=I3N6P4_ICTTR)

HSP 1 Score: 79.3 bits (194), Expect = 5.200e-13
Identity = 48/160 (30.00%), Postives = 81/160 (50.62%), Query Frame = 0
Query:    3 NDASFPVSDNSIEPG--FSPLVCASHNPDYTLWQPDALISLGVRTLLTNVSNEGIENELEQAQLQKKVLQYLTVSTENVSATGTTFLAISVDALGNFTRLSCIAKIIPSPDWFIGLPSIDLCTNGSFTREREGNLFGWDGGIDNSEAYDE----SVPQPT 156
            + A+FP       P   +S L+ ASH+ DY++W+ DA +S G+R          +  ELE A   +KV   L V +     +GT   +  ++     + +S + +I+PSPDWF+G+ S+DLC  G +  +   +L+  D G D+   +      ++PQ T
Sbjct:   53 SQAAFPKQYPLFRPPAQWSSLLGASHSSDYSMWRKDAYVSNGLRDFAERGEAWALMKELEAAG--EKVQSVLAVFSAPAVPSGTGQTSTELEVQPRHSLVSFVVRIVPSPDWFVGVDSLDLCEGGRWKEQASLDLYPHDAGTDSGFTFSSPNFATIPQDT 210          
BLAST of Gchil2002.t1 vs. uniprot
Match: UPI001EB03C4B (spondin-2 isoform X2 n=1 Tax=Marmota monax TaxID=9995 RepID=UPI001EB03C4B)

HSP 1 Score: 79.3 bits (194), Expect = 5.200e-13
Identity = 48/160 (30.00%), Postives = 81/160 (50.62%), Query Frame = 0
Query:    3 NDASFPVSDNSIEPG--FSPLVCASHNPDYTLWQPDALISLGVRTLLTNVSNEGIENELEQAQLQKKVLQYLTVSTENVSATGTTFLAISVDALGNFTRLSCIAKIIPSPDWFIGLPSIDLCTNGSFTREREGNLFGWDGGIDNSEAYDE----SVPQPT 156
            + A+FP       P   +S L+ ASH+ DY++W+ DA +S G+R          +  ELE A   +KV   L V +     +GT   +  ++     + +S + +I+PSPDWF+G+ S+DLC  G +  +   +L+  D G D+   +      ++PQ T
Sbjct:   53 SQAAFPKQYPLFRPPAQWSSLLGASHSSDYSMWRKDAYVSNGLRDFAERGEAWALMKELEAAG--EKVQSVLAVFSAPAVPSGTGQTSTELEVQPRHSLVSFVVRIVPSPDWFVGVDSLDLCEGGRWKEQASLDLYPHDAGTDSGFTFSSPNFATIPQDT 210          
The following BLAST results are available for this feature:
BLAST of Gchil2002.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IFS2_9FLOR1.090e-11453.98U1 small nuclear ribonucleoprotein 70 kDa n=1 Tax=... [more]
A0A2V3IQ05_9FLOR1.680e-3355.45Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QLS2_CHOCR9.900e-3037.65Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3J1H7_9FLOR7.620e-2946.15Early nodulin-12A n=1 Tax=Gracilariopsis chorda Ta... [more]
R7Q6G8_CHOCR7.730e-2750.86Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A2V3ISB7_9FLOR3.440e-2145.87Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A151DU16_9ARCH5.320e-1432.52Spondin domain-containing protein n=1 Tax=Thermopl... [more]
A0A6P8QUZ2_GEOSA5.020e-1332.26spondin-2-like n=1 Tax=Geotrypetes seraphini TaxID... [more]
I3N6P4_ICTTR5.200e-1330.00Spondin 2 n=6 Tax=Sciuridae TaxID=55153 RepID=I3N6... [more]
UPI001EB03C4B5.200e-1330.00spondin-2 isoform X2 n=1 Tax=Marmota monax TaxID=9... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 52..72
NoneNo IPR availablePANTHERPTHR11311:SF16SPONDIN-1coord: 12..160
NoneNo IPR availablePANTHERPTHR11311SPONDINcoord: 12..160
IPR038678Spondin, N-terminal domain superfamilyGENE3D2.60.40.2130coord: 3..170
e-value: 1.3E-29
score: 105.3
IPR009465Spondin, N-terminalPFAMPF06468Spond_Ncoord: 13..151
e-value: 2.9E-26
score: 92.7
IPR009465Spondin, N-terminalPROSITEPS51020SPONDINcoord: 1..173
score: 22.356356

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1625567..1627372 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2002.t1Gchil2002.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004439_pilon 1625567..1627372 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil2002.t1 ID=Gchil2002.t1|Name=Gchil2002.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=340bp
MRNDASFPVSDNSIEPGFSPLVCASHNPDYTLWQPDALISLGVRTLLTNV
SNEGIENELEQAQLQKKVLQYLTVSTENVSATGTTFLAISVDALGNFTRL
SCIAKIIPSPDWFIGLPSIDLCTNGSFTREREGNLFGWDGGIDNSEAYDE
SVPQPTSEAVPVLRAQLASPGGYGRAIVKQTQLPKPSPTTPVAANTDNNS
APTPTQVPNPFVPEEVSEQSFFEPEPDTKICVDADALEHLPPNALLYTEH
RLARVLCDPFASCATPGHMVSFRGVPMMMMSYCRITRCTKQQMFVNSPRY
KPAIRIPTRSPHLQFTALAARYSTPFEEYIMSTALRIGL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038678Spondin_N_sf
IPR009465Spondin_N