Gchil2002.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2002.t1
Unique NameGchil2002.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length340
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004439_piloncontigtig00004439_pilon:1625567..1627372 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7220.FBpp0138816
Preferred nameSPON1
PFAMsKunitz_BPTI,Reeler,Spond_N,TSP_1
Max annot lvl33208|Metazoa
GOsGO:0000902,GO:0000904,GO:0005575,GO:0005576,GO:0005604,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0006928,GO:0006935,GO:0007155,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007413,GO:0007517,GO:0008037,GO:0008038,GO:0008045,GO:0008150,GO:0009605,GO:0009653,GO:0009987,GO:0012505,GO:0016043,GO:0016203,GO:0022008,GO:0022610,GO:0030016,GO:0030017,GO:0030030,GO:0030154,GO:0030182,GO:0031012,GO:0031175,GO:0031430,GO:0031672,GO:0031974,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0033563,GO:0033627,GO:0040011,GO:0042221,GO:0042330,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0044421,GO:0044422,GO:0044424,GO:0044432,GO:0044444,GO:0044446,GO:0044449,GO:0044464,GO:0048468,GO:0048513,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050896,GO:0055120,GO:0060538,GO:0061061,GO:0061564,GO:0062023,GO:0070013,GO:0071840,GO:0097485,GO:0099080,GO:0099081,GO:0099512,GO:0106030,GO:0120036,GO:0120039
Evalue1.12e-13
EggNOG OGsKOG3539@1|root,KOG3539@2759|Eukaryota,38FW7@33154|Opisthokonta,3BEQ3@33208|Metazoa,3CYKJ@33213|Bilateria,41TS9@6656|Arthropoda,3SKHS@50557|Insecta,44Z5J@7147|Diptera,45X7E@7214|Drosophilidae
DescriptionSerine-type endopeptidase inhibitor activity
COG categoryW
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2002Gchil2002Gracilaria chilensis NLEC103_M9 malegenetig00004439_pilon 1625567..1627372 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2002.t1Gchil2002.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004439_pilon 1625567..1627372 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2002.t1.stop1Gchil2002.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004439_pilon 1625567..1625569 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2002.t1.CDS1Gchil2002.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1625567..1626582 -
Gchil2002.t1.CDS2Gchil2002.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004439_pilon 1627369..1627372 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2002.t1.exon1Gchil2002.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1625567..1626582 -
Gchil2002.t1.exon2Gchil2002.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004439_pilon 1627369..1627372 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2002.t1.intron1Gchil2002.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004439_pilon 1626583..1627368 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2002.t1.start1Gchil2002.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004439_pilon 1627370..1627372 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2002.t1 ID=Gchil2002.t1|Name=Gchil2002.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=340bp
MRNDASFPVSDNSIEPGFSPLVCASHNPDYTLWQPDALISLGVRTLLTNV
SNEGIENELEQAQLQKKVLQYLTVSTENVSATGTTFLAISVDALGNFTRL
SCIAKIIPSPDWFIGLPSIDLCTNGSFTREREGNLFGWDGGIDNSEAYDE
SVPQPTSEAVPVLRAQLASPGGYGRAIVKQTQLPKPSPTTPVAANTDNNS
APTPTQVPNPFVPEEVSEQSFFEPEPDTKICVDADALEHLPPNALLYTEH
RLARVLCDPFASCATPGHMVSFRGVPMMMMSYCRITRCTKQQMFVNSPRY
KPAIRIPTRSPHLQFTALAARYSTPFEEYIMSTALRIGL*
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spliced messenger RNA

>Gchil2002.t1 ID=Gchil2002.t1|Name=Gchil2002.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1020bp|location=Sequence derived from alignment at tig00004439_pilon:1625567..1627372- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGGAACGATGCCTCCTTCCCTGTCAGCGATAATTCCATCGAGCCCGG
CTTCTCGCCGCTTGTTTGCGCCAGCCATAACCCCGACTACACGCTCTGGC
AACCTGACGCCCTCATCAGTCTGGGCGTTCGCACTCTGCTCACGAATGTT
TCCAACGAGGGTATCGAGAATGAGCTCGAGCAAGCCCAGCTACAGAAGAA
GGTCCTTCAGTACCTCACAGTCAGCACAGAAAACGTATCCGCCACCGGTA
CCACCTTCCTTGCCATATCTGTCGACGCACTAGGAAACTTCACCCGCCTT
AGTTGCATCGCAAAAATTATTCCCTCTCCCGACTGGTTTATCGGTCTACC
GAGCATTGATCTGTGCACGAATGGCTCATTTACCCGCGAAAGAGAAGGAA
ACCTCTTTGGCTGGGATGGCGGTATCGATAATTCTGAAGCGTACGACGAA
AGTGTTCCACAACCCACATCAGAGGCTGTCCCAGTCCTGCGCGCCCAGCT
TGCCTCTCCCGGAGGCTATGGTCGAGCTATCGTGAAACAAACACAGCTTC
CCAAACCTTCACCAACTACCCCAGTTGCAGCGAATACCGACAACAACTCT
GCCCCGACCCCGACCCAGGTTCCGAATCCATTTGTCCCAGAAGAGGTCAG
TGAGCAGTCCTTTTTCGAACCTGAGCCAGATACAAAGATTTGCGTCGATG
CCGATGCGCTTGAGCATTTGCCACCAAACGCCCTATTATACACTGAACAT
CGCTTGGCTCGGGTCCTGTGCGACCCATTCGCAAGCTGTGCAACACCTGG
TCACATGGTCTCCTTTCGAGGTGTGCCTATGATGATGATGTCTTATTGTC
GCATCACTCGTTGTACAAAACAGCAAATGTTTGTCAACAGTCCCAGGTAC
AAACCAGCGATTCGAATACCCACCAGATCTCCACATCTACAGTTCACTGC
CCTTGCGGCGAGATACTCCACTCCTTTTGAGGAATACATCATGTCCACTG
CGCTGCGGATTGGTCTGTAG
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protein sequence of Gchil2002.t1

>Gchil2002.t1 ID=Gchil2002.t1|Name=Gchil2002.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=340bp
MRNDASFPVSDNSIEPGFSPLVCASHNPDYTLWQPDALISLGVRTLLTNV
SNEGIENELEQAQLQKKVLQYLTVSTENVSATGTTFLAISVDALGNFTRL
SCIAKIIPSPDWFIGLPSIDLCTNGSFTREREGNLFGWDGGIDNSEAYDE
SVPQPTSEAVPVLRAQLASPGGYGRAIVKQTQLPKPSPTTPVAANTDNNS
APTPTQVPNPFVPEEVSEQSFFEPEPDTKICVDADALEHLPPNALLYTEH
RLARVLCDPFASCATPGHMVSFRGVPMMMMSYCRITRCTKQQMFVNSPRY
KPAIRIPTRSPHLQFTALAARYSTPFEEYIMSTALRIGL*
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mRNA from alignment at tig00004439_pilon:1625567..1627372-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2002.t1 ID=Gchil2002.t1|Name=Gchil2002.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1806bp|location=Sequence derived from alignment at tig00004439_pilon:1625567..1627372- (Gracilaria chilensis NLEC103_M9 male)
ATGCGTACGCAGCACAGAACATGCGGGAGCAACGGGGGATGGGTGCAGCG
AACTGCGCTGAGCTTAGGTGTGGGTGCCTACATGATGGGCTGCTGTGTGT
AAACGGACATGTGCGGTCTCCGGAAGATTTTTCCATCAGCCTCGGAGCGA
TGATTGGCACGACGCGGAAAGTACGCAAGATACAACGGTATGCAGCGCGC
GACTTGGTGGTAAGGTTAGGTCGCTCAGCGTTATGCTTAAAAGTTCACTG
CACATGACAACAGCCATAGCTAGATCAGAGTGCGGCAGCTCAGCGTGGCG
GTGGAAGAGATAACCAACGGCGTTGTTTCTGCGCTGCCATTGGCTGCGCG
AAGCGGAATACTGCCCGTCACGCCGCCGCCCCCCTCCCCCCCTCCTCGTG
CGCATGGGCTTCCCTGTAAAGTTTATCTTCTGACAACCTCTTCGACCCTT
CCTCCCCCGTACTTTGCCACGCATCTCCACGCCTGCTTTGGGCTTACGCA
GCGCACAATCATAGACTTCATAGACTTTGTGCCCAGCTCGCTTTCTGGCA
GTCCTTCTCCCTTCCCCCTTCCCATTCTCTTCCCCTTTCCCTTCTGCCGT
CTACCTCGCATGCCCAACCCCTCAGCTCTCCGTTCCACTCCTTCAATGCC
TTCCCTTTCGCCCCTGTCCCCTCTTCTCCGCCTCTACCTGGCCCTTTCTC
TATTCTTCTGCCTCTTCCATCCCGCCGTCTCCCACCCATGTGTGGGCATC
AGCTCCTACATCGTCTCCTTCATCTACAATTGGAACACAGGGAACGATGC
CTCCTTCCCTGTCAGCGATAATTCCATCGAGCCCGGCTTCTCGCCGCTTG
TTTGCGCCAGCCATAACCCCGACTACACGCTCTGGCAACCTGACGCCCTC
ATCAGTCTGGGCGTTCGCACTCTGCTCACGAATGTTTCCAACGAGGGTAT
CGAGAATGAGCTCGAGCAAGCCCAGCTACAGAAGAAGGTCCTTCAGTACC
TCACAGTCAGCACAGAAAACGTATCCGCCACCGGTACCACCTTCCTTGCC
ATATCTGTCGACGCACTAGGAAACTTCACCCGCCTTAGTTGCATCGCAAA
AATTATTCCCTCTCCCGACTGGTTTATCGGTCTACCGAGCATTGATCTGT
GCACGAATGGCTCATTTACCCGCGAAAGAGAAGGAAACCTCTTTGGCTGG
GATGGCGGTATCGATAATTCTGAAGCGTACGACGAAAGTGTTCCACAACC
CACATCAGAGGCTGTCCCAGTCCTGCGCGCCCAGCTTGCCTCTCCCGGAG
GCTATGGTCGAGCTATCGTGAAACAAACACAGCTTCCCAAACCTTCACCA
ACTACCCCAGTTGCAGCGAATACCGACAACAACTCTGCCCCGACCCCGAC
CCAGGTTCCGAATCCATTTGTCCCAGAAGAGGTCAGTGAGCAGTCCTTTT
TCGAACCTGAGCCAGATACAAAGATTTGCGTCGATGCCGATGCGCTTGAG
CATTTGCCACCAAACGCCCTATTATACACTGAACATCGCTTGGCTCGGGT
CCTGTGCGACCCATTCGCAAGCTGTGCAACACCTGGTCACATGGTCTCCT
TTCGAGGTGTGCCTATGATGATGATGTCTTATTGTCGCATCACTCGTTGT
ACAAAACAGCAAATGTTTGTCAACAGTCCCAGGTACAAACCAGCGATTCG
AATACCCACCAGATCTCCACATCTACAGTTCACTGCCCTTGCGGCGAGAT
ACTCCACTCCTTTTGAGGAATACATCATGTCCACTGCGCTGCGGATTGGT
CTGTAG
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Coding sequence (CDS) from alignment at tig00004439_pilon:1625567..1627372-

>Gchil2002.t1 ID=Gchil2002.t1|Name=Gchil2002.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1020bp|location=Sequence derived from alignment at tig00004439_pilon:1625567..1627372- (Gracilaria chilensis NLEC103_M9 male)
ATGCGGAACGATGCCTCCTTCCCTGTCAGCGATAATTCCATCGAGCCCGG
CTTCTCGCCGCTTGTTTGCGCCAGCCATAACCCCGACTACACGCTCTGGC
AACCTGACGCCCTCATCAGTCTGGGCGTTCGCACTCTGCTCACGAATGTT
TCCAACGAGGGTATCGAGAATGAGCTCGAGCAAGCCCAGCTACAGAAGAA
GGTCCTTCAGTACCTCACAGTCAGCACAGAAAACGTATCCGCCACCGGTA
CCACCTTCCTTGCCATATCTGTCGACGCACTAGGAAACTTCACCCGCCTT
AGTTGCATCGCAAAAATTATTCCCTCTCCCGACTGGTTTATCGGTCTACC
GAGCATTGATCTGTGCACGAATGGCTCATTTACCCGCGAAAGAGAAGGAA
ACCTCTTTGGCTGGGATGGCGGTATCGATAATTCTGAAGCGTACGACGAA
AGTGTTCCACAACCCACATCAGAGGCTGTCCCAGTCCTGCGCGCCCAGCT
TGCCTCTCCCGGAGGCTATGGTCGAGCTATCGTGAAACAAACACAGCTTC
CCAAACCTTCACCAACTACCCCAGTTGCAGCGAATACCGACAACAACTCT
GCCCCGACCCCGACCCAGGTTCCGAATCCATTTGTCCCAGAAGAGGTCAG
TGAGCAGTCCTTTTTCGAACCTGAGCCAGATACAAAGATTTGCGTCGATG
CCGATGCGCTTGAGCATTTGCCACCAAACGCCCTATTATACACTGAACAT
CGCTTGGCTCGGGTCCTGTGCGACCCATTCGCAAGCTGTGCAACACCTGG
TCACATGGTCTCCTTTCGAGGTGTGCCTATGATGATGATGTCTTATTGTC
GCATCACTCGTTGTACAAAACAGCAAATGTTTGTCAACAGTCCCAGGTAC
AAACCAGCGATTCGAATACCCACCAGATCTCCACATCTACAGTTCACTGC
CCTTGCGGCGAGATACTCCACTCCTTTTGAGGAATACATCATGTCCACTG
CGCTGCGGATTGGTCTGTAG
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