Gchil1264.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1264.t1
Unique Name	Gchil1264.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	663

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004437_pilon	contig	tig00004437_pilon:897848..899836 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1264	Gchil1264	Gracilaria chilensis NLEC103_M9 male	gene	tig00004437_pilon 897848..899836 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1264.t1.start1	Gchil1264.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004437_pilon 897848..897850 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1264.t1.CDS1	Gchil1264.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004437_pilon 897848..899836 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1264.t1.exon1	Gchil1264.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004437_pilon 897848..899836 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1264.t1.stop1	Gchil1264.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004437_pilon 899834..899836 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1264.t1	Gchil1264.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004437_pilon 897848..899836 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004437_pilon:897848..899836+
coding sequence from alignment at tig00004437_pilon:897848..899836+

mRNA sequence

>Gchil1264.t1 ID=Gchil1264.t1|Name=Gchil1264.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=663bp
MTAQPRPPRRVSKRRREHPLPSIPSEGFTRDELDSDDSRDNASNPISTSY
VATSHRQHTSSLTEPQFEVDDLDSSENEHVDSHLPSHQRLLGFTDAIFAS
DDDEDDPDFELASVQPFLSQPSSPTVQPLPFTLAHFASEDEDDDPDFDVH
FPLPNAQRSLQTKSSIQSSDSPPCSPQHDMTYAQFLQALNWNAPTEQHSF
PDAFNKLLDDDDEFDYMREAANVQEDPLEFRDDLPVSRREVAQLLSERGI
VLRSQKRQRTRRVAPATSAPTNPLLFPHSVVPATGTHVPVQSMSSVTPVA
AVSSTFPPPCITPVSSANAVVSTTPAVASNTALASRISQQQALRTSAVAV
LSPHFLVQFQQQLKAFVQILAHIHANSAKSARISGNEEPDPLANDAHEKS
EIMLKRVVENRKMSISYHEMLETQMMRIALFSDGLAFRQFEECFSKPNRK
KSVYAVDGLEDIELFLNDCRTLAIEQMPSRALERVEKISQPHLKRALLTR
KRQFTLSGAREGWFIWTAEDDRLLALTIAKYGREVAEYSKDLLPHRLEDD
CQARVRHLCSRRCTGNAVKRQMMLISAPLNQQEVKLVQHGLRMFGGRVED
EFVWKRIQKELLPGRQWSLLQKLWLWRETRKKTKARYRAKVSQKKKAMRS
SDKTGSNALADG*

spliced messenger RNA

>Gchil1264.t1 ID=Gchil1264.t1|Name=Gchil1264.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1989bp|location=Sequence derived from alignment at tig00004437_pilon:897848..899836+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACAGCGCAGCCGCGCCCTCCTCGCCGCGTCTCTAAGCGCCGTCGCGA
GCATCCCCTCCCTTCCATCCCCTCCGAGGGTTTTACCCGAGACGAACTCG
ACTCTGACGACTCGCGCGACAACGCCTCAAACCCCATTTCCACATCTTAT
GTTGCGACGTCGCACCGCCAGCACACTTCGAGTCTCACAGAGCCTCAATT
TGAAGTAGACGACCTTGATTCCTCCGAAAATGAGCACGTTGATTCACATC
TCCCTTCCCACCAACGACTCCTTGGCTTCACTGATGCCATTTTTGCGTCG
GATGATGACGAAGATGACCCTGACTTTGAACTTGCTTCTGTCCAGCCGTT
TCTTTCACAACCATCTTCGCCTACTGTACAACCTCTTCCGTTCACGCTTG
CTCATTTTGCGTCAGAAGATGAGGACGACGACCCTGACTTCGACGTACAC
TTTCCGCTTCCAAATGCGCAGCGATCCTTACAAACAAAAAGCTCTATTCA
GTCAAGCGATAGTCCTCCATGCAGTCCTCAACATGATATGACCTATGCCC
AGTTTTTGCAAGCCCTTAATTGGAACGCTCCAACCGAACAACATTCTTTT
CCAGATGCTTTCAACAAACTTCTAGACGACGATGATGAGTTTGACTACAT
GCGTGAAGCCGCTAACGTACAAGAGGATCCTCTTGAATTTCGCGATGATT
TACCAGTCAGTCGCCGGGAAGTAGCTCAGCTTCTATCAGAGCGCGGCATT
GTTTTACGCAGTCAAAAAAGACAACGGACAAGGAGAGTTGCGCCAGCAAC
GAGTGCTCCAACAAATCCTTTGTTGTTTCCGCACAGTGTCGTGCCTGCTA
CAGGCACACATGTACCGGTCCAATCTATGAGCTCTGTTACTCCCGTTGCT
GCTGTTTCTTCTACTTTTCCTCCACCTTGTATCACCCCTGTTTCATCAGC
AAATGCTGTCGTCTCTACCACGCCCGCAGTAGCATCAAACACCGCTCTCG
CTTCTCGGATCTCACAACAGCAAGCATTACGTACAAGTGCGGTTGCGGTA
CTCTCGCCACATTTTCTGGTTCAATTCCAACAACAGCTAAAAGCGTTTGT
ACAGATTTTGGCACATATTCATGCGAATAGCGCAAAGAGTGCACGGATAA
GTGGTAACGAAGAGCCTGATCCTTTAGCAAACGACGCACACGAAAAATCT
GAGATCATGTTGAAGCGAGTCGTAGAGAATAGAAAGATGTCTATATCATA
TCATGAAATGCTGGAAACTCAGATGATGCGTATTGCGCTATTTTCGGATG
GACTTGCATTTCGCCAGTTTGAGGAATGTTTTTCCAAGCCAAACCGTAAG
AAGTCTGTATATGCTGTAGATGGGCTGGAAGATATTGAATTGTTTTTAAA
TGATTGTCGTACTCTGGCGATTGAGCAAATGCCCTCCAGGGCTTTGGAGC
GTGTGGAGAAAATTTCACAACCCCATCTCAAGCGAGCTTTACTGACGAGA
AAGCGACAGTTTACGTTGTCGGGGGCCCGTGAGGGATGGTTTATCTGGAC
TGCTGAAGATGACAGATTGTTGGCGTTGACAATCGCGAAGTATGGCAGGG
AAGTCGCGGAATATTCGAAGGACTTACTACCTCATAGGTTAGAGGATGAT
TGCCAAGCGAGAGTGCGACATCTATGTTCCCGACGATGCACGGGCAACGC
CGTGAAGAGACAAATGATGCTGATTAGTGCACCGCTTAACCAGCAGGAAG
TGAAGCTTGTGCAACACGGACTACGTATGTTCGGGGGGCGCGTGGAGGAT
GAATTTGTCTGGAAACGCATTCAGAAGGAATTACTTCCGGGAAGGCAGTG
GTCGTTGTTGCAGAAACTGTGGTTGTGGAGAGAGACGAGGAAGAAGACAA
AAGCAAGGTATCGAGCTAAGGTGAGTCAGAAAAAGAAGGCGATGAGGAGC
TCGGATAAAACGGGCTCAAATGCGCTGGCAGATGGGTGA

protein sequence of Gchil1264.t1

>Gchil1264.t1 ID=Gchil1264.t1|Name=Gchil1264.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=663bp
MTAQPRPPRRVSKRRREHPLPSIPSEGFTRDELDSDDSRDNASNPISTSY
VATSHRQHTSSLTEPQFEVDDLDSSENEHVDSHLPSHQRLLGFTDAIFAS
DDDEDDPDFELASVQPFLSQPSSPTVQPLPFTLAHFASEDEDDDPDFDVH
FPLPNAQRSLQTKSSIQSSDSPPCSPQHDMTYAQFLQALNWNAPTEQHSF
PDAFNKLLDDDDEFDYMREAANVQEDPLEFRDDLPVSRREVAQLLSERGI
VLRSQKRQRTRRVAPATSAPTNPLLFPHSVVPATGTHVPVQSMSSVTPVA
AVSSTFPPPCITPVSSANAVVSTTPAVASNTALASRISQQQALRTSAVAV
LSPHFLVQFQQQLKAFVQILAHIHANSAKSARISGNEEPDPLANDAHEKS
EIMLKRVVENRKMSISYHEMLETQMMRIALFSDGLAFRQFEECFSKPNRK
KSVYAVDGLEDIELFLNDCRTLAIEQMPSRALERVEKISQPHLKRALLTR
KRQFTLSGAREGWFIWTAEDDRLLALTIAKYGREVAEYSKDLLPHRLEDD
CQARVRHLCSRRCTGNAVKRQMMLISAPLNQQEVKLVQHGLRMFGGRVED
EFVWKRIQKELLPGRQWSLLQKLWLWRETRKKTKARYRAKVSQKKKAMRS
SDKTGSNALADG*

mRNA from alignment at tig00004437_pilon:897848..899836+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1264.t1 ID=Gchil1264.t1|Name=Gchil1264.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1989bp|location=Sequence derived from alignment at tig00004437_pilon:897848..899836+ (Gracilaria chilensis NLEC103_M9 male)
ATGACAGCGCAGCCGCGCCCTCCTCGCCGCGTCTCTAAGCGCCGTCGCGA
GCATCCCCTCCCTTCCATCCCCTCCGAGGGTTTTACCCGAGACGAACTCG
ACTCTGACGACTCGCGCGACAACGCCTCAAACCCCATTTCCACATCTTAT
GTTGCGACGTCGCACCGCCAGCACACTTCGAGTCTCACAGAGCCTCAATT
TGAAGTAGACGACCTTGATTCCTCCGAAAATGAGCACGTTGATTCACATC
TCCCTTCCCACCAACGACTCCTTGGCTTCACTGATGCCATTTTTGCGTCG
GATGATGACGAAGATGACCCTGACTTTGAACTTGCTTCTGTCCAGCCGTT
TCTTTCACAACCATCTTCGCCTACTGTACAACCTCTTCCGTTCACGCTTG
CTCATTTTGCGTCAGAAGATGAGGACGACGACCCTGACTTCGACGTACAC
TTTCCGCTTCCAAATGCGCAGCGATCCTTACAAACAAAAAGCTCTATTCA
GTCAAGCGATAGTCCTCCATGCAGTCCTCAACATGATATGACCTATGCCC
AGTTTTTGCAAGCCCTTAATTGGAACGCTCCAACCGAACAACATTCTTTT
CCAGATGCTTTCAACAAACTTCTAGACGACGATGATGAGTTTGACTACAT
GCGTGAAGCCGCTAACGTACAAGAGGATCCTCTTGAATTTCGCGATGATT
TACCAGTCAGTCGCCGGGAAGTAGCTCAGCTTCTATCAGAGCGCGGCATT
GTTTTACGCAGTCAAAAAAGACAACGGACAAGGAGAGTTGCGCCAGCAAC
GAGTGCTCCAACAAATCCTTTGTTGTTTCCGCACAGTGTCGTGCCTGCTA
CAGGCACACATGTACCGGTCCAATCTATGAGCTCTGTTACTCCCGTTGCT
GCTGTTTCTTCTACTTTTCCTCCACCTTGTATCACCCCTGTTTCATCAGC
AAATGCTGTCGTCTCTACCACGCCCGCAGTAGCATCAAACACCGCTCTCG
CTTCTCGGATCTCACAACAGCAAGCATTACGTACAAGTGCGGTTGCGGTA
CTCTCGCCACATTTTCTGGTTCAATTCCAACAACAGCTAAAAGCGTTTGT
ACAGATTTTGGCACATATTCATGCGAATAGCGCAAAGAGTGCACGGATAA
GTGGTAACGAAGAGCCTGATCCTTTAGCAAACGACGCACACGAAAAATCT
GAGATCATGTTGAAGCGAGTCGTAGAGAATAGAAAGATGTCTATATCATA
TCATGAAATGCTGGAAACTCAGATGATGCGTATTGCGCTATTTTCGGATG
GACTTGCATTTCGCCAGTTTGAGGAATGTTTTTCCAAGCCAAACCGTAAG
AAGTCTGTATATGCTGTAGATGGGCTGGAAGATATTGAATTGTTTTTAAA
TGATTGTCGTACTCTGGCGATTGAGCAAATGCCCTCCAGGGCTTTGGAGC
GTGTGGAGAAAATTTCACAACCCCATCTCAAGCGAGCTTTACTGACGAGA
AAGCGACAGTTTACGTTGTCGGGGGCCCGTGAGGGATGGTTTATCTGGAC
TGCTGAAGATGACAGATTGTTGGCGTTGACAATCGCGAAGTATGGCAGGG
AAGTCGCGGAATATTCGAAGGACTTACTACCTCATAGGTTAGAGGATGAT
TGCCAAGCGAGAGTGCGACATCTATGTTCCCGACGATGCACGGGCAACGC
CGTGAAGAGACAAATGATGCTGATTAGTGCACCGCTTAACCAGCAGGAAG
TGAAGCTTGTGCAACACGGACTACGTATGTTCGGGGGGCGCGTGGAGGAT
GAATTTGTCTGGAAACGCATTCAGAAGGAATTACTTCCGGGAAGGCAGTG
GTCGTTGTTGCAGAAACTGTGGTTGTGGAGAGAGACGAGGAAGAAGACAA
AAGCAAGGTATCGAGCTAAGGTGAGTCAGAAAAAGAAGGCGATGAGGAGC
TCGGATAAAACGGGCTCAAATGCGCTGGCAGATGGGTGA

Coding sequence (CDS) from alignment at tig00004437_pilon:897848..899836+

>Gchil1264.t1 ID=Gchil1264.t1|Name=Gchil1264.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1989bp|location=Sequence derived from alignment at tig00004437_pilon:897848..899836+ (Gracilaria chilensis NLEC103_M9 male)
ATGACAGCGCAGCCGCGCCCTCCTCGCCGCGTCTCTAAGCGCCGTCGCGA
GCATCCCCTCCCTTCCATCCCCTCCGAGGGTTTTACCCGAGACGAACTCG
ACTCTGACGACTCGCGCGACAACGCCTCAAACCCCATTTCCACATCTTAT
GTTGCGACGTCGCACCGCCAGCACACTTCGAGTCTCACAGAGCCTCAATT
TGAAGTAGACGACCTTGATTCCTCCGAAAATGAGCACGTTGATTCACATC
TCCCTTCCCACCAACGACTCCTTGGCTTCACTGATGCCATTTTTGCGTCG
GATGATGACGAAGATGACCCTGACTTTGAACTTGCTTCTGTCCAGCCGTT
TCTTTCACAACCATCTTCGCCTACTGTACAACCTCTTCCGTTCACGCTTG
CTCATTTTGCGTCAGAAGATGAGGACGACGACCCTGACTTCGACGTACAC
TTTCCGCTTCCAAATGCGCAGCGATCCTTACAAACAAAAAGCTCTATTCA
GTCAAGCGATAGTCCTCCATGCAGTCCTCAACATGATATGACCTATGCCC
AGTTTTTGCAAGCCCTTAATTGGAACGCTCCAACCGAACAACATTCTTTT
CCAGATGCTTTCAACAAACTTCTAGACGACGATGATGAGTTTGACTACAT
GCGTGAAGCCGCTAACGTACAAGAGGATCCTCTTGAATTTCGCGATGATT
TACCAGTCAGTCGCCGGGAAGTAGCTCAGCTTCTATCAGAGCGCGGCATT
GTTTTACGCAGTCAAAAAAGACAACGGACAAGGAGAGTTGCGCCAGCAAC
GAGTGCTCCAACAAATCCTTTGTTGTTTCCGCACAGTGTCGTGCCTGCTA
CAGGCACACATGTACCGGTCCAATCTATGAGCTCTGTTACTCCCGTTGCT
GCTGTTTCTTCTACTTTTCCTCCACCTTGTATCACCCCTGTTTCATCAGC
AAATGCTGTCGTCTCTACCACGCCCGCAGTAGCATCAAACACCGCTCTCG
CTTCTCGGATCTCACAACAGCAAGCATTACGTACAAGTGCGGTTGCGGTA
CTCTCGCCACATTTTCTGGTTCAATTCCAACAACAGCTAAAAGCGTTTGT
ACAGATTTTGGCACATATTCATGCGAATAGCGCAAAGAGTGCACGGATAA
GTGGTAACGAAGAGCCTGATCCTTTAGCAAACGACGCACACGAAAAATCT
GAGATCATGTTGAAGCGAGTCGTAGAGAATAGAAAGATGTCTATATCATA
TCATGAAATGCTGGAAACTCAGATGATGCGTATTGCGCTATTTTCGGATG
GACTTGCATTTCGCCAGTTTGAGGAATGTTTTTCCAAGCCAAACCGTAAG
AAGTCTGTATATGCTGTAGATGGGCTGGAAGATATTGAATTGTTTTTAAA
TGATTGTCGTACTCTGGCGATTGAGCAAATGCCCTCCAGGGCTTTGGAGC
GTGTGGAGAAAATTTCACAACCCCATCTCAAGCGAGCTTTACTGACGAGA
AAGCGACAGTTTACGTTGTCGGGGGCCCGTGAGGGATGGTTTATCTGGAC
TGCTGAAGATGACAGATTGTTGGCGTTGACAATCGCGAAGTATGGCAGGG
AAGTCGCGGAATATTCGAAGGACTTACTACCTCATAGGTTAGAGGATGAT
TGCCAAGCGAGAGTGCGACATCTATGTTCCCGACGATGCACGGGCAACGC
CGTGAAGAGACAAATGATGCTGATTAGTGCACCGCTTAACCAGCAGGAAG
TGAAGCTTGTGCAACACGGACTACGTATGTTCGGGGGGCGCGTGGAGGAT
GAATTTGTCTGGAAACGCATTCAGAAGGAATTACTTCCGGGAAGGCAGTG
GTCGTTGTTGCAGAAACTGTGGTTGTGGAGAGAGACGAGGAAGAAGACAA
AAGCAAGGTATCGAGCTAAGGTGAGTCAGAAAAAGAAGGCGATGAGGAGC
TCGGATAAAACGGGCTCAAATGCGCTGGCAGATGGGTGA