Gchil5666.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5666.t1
Unique NameGchil5666.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length827
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:626039..628519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5666Gchil5666Gracilaria chilensis NLEC103_M9 malegenetig00000015_pilon 626039..628519 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5666.t1.stop1Gchil5666.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000015_pilon 626039..626041 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5666.t1.CDS1Gchil5666.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 626039..628519 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5666.t1.exon1Gchil5666.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 626039..628519 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5666.t1.start1Gchil5666.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000015_pilon 628517..628519 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5666.t1Gchil5666.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000015_pilon 626039..628519 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5666.t1 ID=Gchil5666.t1|Name=Gchil5666.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=827bp
MSSSQGSGNRFSGEMFYQLFGKSRGRGRGRGRGRGQSRGRSRGNGLGRGH
DDQFRRAELNNHNYYHEQQQGPRQAPHRDSTNGGVSYQRGKRKRYFSDAM
PPGPPPPSRPPQYNPNHSFIPKDPPSKPPIEDPDMQRKRRDKKAPRGGFI
PKVDKEQEYQIDLYCYICDLSFYDPSCKTSHDRSRGHIKQYQHLRNSGLL
DEEGNRVERQISEEEFRKQMTEEQLRKKREEQLSEKASMFCQEDLNKWPR
EFKDWATRSLRNANALARAENDKRITAAVRAEIRAVYDHHEKHCTLRREP
WCQRPLATGELYGKIEDIKPNVLVVHEDQLVKRPQLSTNGTDHPAPSKDP
LATNVDGAKDDTVMRTEPTRDVGHGRDPLMHQSMEIERKNNDSGRLSRGL
VAGIDYSLYPQYGEATPHLIRNNEERVNRQKLAIAEEPHTRHGYETHMSV
YMPHKRLTEKQPRIQEDKPRIKEQSFGWTMSAESKDLQLACRVSKEKDFY
LVKCHERFGSSFDWWEPADDTVRTREGITQMLEKVSTLKKEYENGEYEYG
KLCSQLSELVADLRDRGTRIGTVLECIRMQISAALQVGSFNDFAKHCSEF
MKSVKQLTEWGDLDYEFVGHWLLSMLFLCVKDNGRRSILKKPQTMLRAAE
EMRSFPARQVLHDMRVFECSQILKAVLANNWVFFFNRLQKSAIVHLATDG
RVRQILEGLVPFMRERALVTMLKMSAWIESPVYSLPNLFPLESVVRILGW
NQTTVDDPNFGPNEAKHFISSLPHNFAILGGEVHDWRSAYLRADEEEVRL
QRSDINVDSLLVWSGRSCSAVPEKNF*
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spliced messenger RNA

>Gchil5666.t1 ID=Gchil5666.t1|Name=Gchil5666.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2481bp|location=Sequence derived from alignment at tig00000015_pilon:626039..628519- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCATCTCAAGGCTCTGGAAATCGGTTTTCTGGGGAGATGTTCTA
TCAACTCTTCGGAAAAAGTCGCGGTCGCGGTCGCGGTCGTGGTCGCGGTC
GTGGTCAGAGTCGCGGCCGAAGTCGAGGTAATGGTCTAGGTCGTGGCCAT
GATGATCAATTCAGACGAGCCGAGCTCAACAACCATAATTACTATCATGA
ACAGCAACAGGGACCTCGTCAGGCTCCGCATCGTGACTCAACAAACGGAG
GTGTAAGTTACCAACGTGGAAAGAGAAAACGCTATTTCAGTGACGCTATG
CCACCCGGTCCCCCCCCTCCATCCCGCCCACCTCAATATAATCCTAACCA
CTCTTTCATTCCGAAAGATCCGCCATCAAAGCCGCCGATTGAAGACCCAG
ACATGCAAAGAAAAAGGAGAGACAAAAAAGCTCCTCGCGGCGGTTTCATT
CCAAAAGTGGACAAAGAACAAGAGTACCAAATCGACCTGTATTGTTATAT
ATGTGATTTATCATTCTATGACCCGTCTTGTAAGACATCTCATGATCGTA
GCAGAGGTCATATAAAACAATATCAACATTTGAGAAACTCTGGACTTCTT
GATGAGGAAGGTAACAGAGTAGAGCGTCAAATTAGTGAGGAAGAATTTCG
GAAACAAATGACGGAAGAGCAATTGAGAAAGAAAAGAGAGGAACAGCTTT
CTGAAAAAGCTTCGATGTTCTGTCAAGAGGATTTAAACAAGTGGCCAAGA
GAATTTAAGGATTGGGCAACCCGCTCTCTTCGAAATGCCAATGCCCTAGC
GCGTGCCGAGAATGACAAAAGAATCACTGCTGCAGTTCGTGCTGAGATCC
GGGCTGTTTATGATCATCATGAAAAACACTGTACACTACGACGAGAACCA
TGGTGTCAGAGACCGCTTGCTACTGGTGAATTGTATGGAAAGATCGAGGA
CATCAAACCAAACGTGCTTGTAGTTCATGAAGATCAGCTTGTTAAACGCC
CTCAGCTTTCCACGAACGGTACGGACCATCCCGCTCCATCGAAGGATCCA
CTCGCAACCAATGTTGATGGTGCCAAAGACGATACCGTGATGAGAACTGA
GCCAACCCGAGATGTGGGTCACGGGAGAGATCCTCTTATGCATCAGTCGA
TGGAAATTGAGCGGAAGAATAACGATTCTGGTAGACTTAGTCGAGGTCTA
GTTGCTGGAATCGACTACAGCTTGTATCCTCAATATGGAGAAGCTACTCC
TCATCTGATAAGAAATAACGAGGAAAGAGTAAATCGTCAAAAACTGGCTA
TTGCTGAGGAACCACATACAAGGCATGGATATGAAACGCATATGTCAGTA
TACATGCCTCACAAAAGGCTCACGGAAAAGCAACCTAGAATTCAAGAAGA
CAAACCTCGGATCAAGGAACAGAGTTTCGGTTGGACCATGTCCGCAGAAT
CAAAAGATCTTCAGCTTGCCTGTAGAGTATCAAAGGAAAAAGACTTCTAT
CTGGTCAAATGCCACGAGCGCTTCGGATCTTCTTTCGACTGGTGGGAGCC
AGCAGATGATACTGTTCGAACTCGTGAAGGAATAACTCAAATGCTTGAGA
AAGTTAGCACCTTGAAAAAGGAATACGAGAATGGAGAATATGAGTATGGA
AAACTTTGCAGTCAACTTTCAGAGTTGGTAGCGGATTTACGTGATCGTGG
AACTAGAATTGGTACGGTTTTAGAATGTATTCGTATGCAGATTTCCGCCG
CACTCCAGGTTGGCTCTTTCAATGATTTTGCAAAACACTGCTCAGAATTT
ATGAAATCGGTCAAGCAGTTGACGGAATGGGGGGATTTGGACTACGAGTT
TGTCGGTCACTGGCTTCTATCGATGTTATTTTTATGTGTGAAGGACAATG
GTCGTCGTAGCATTTTGAAAAAACCTCAGACAATGCTTCGAGCTGCCGAA
GAAATGCGTTCTTTTCCGGCTAGGCAGGTTTTACATGATATGAGAGTGTT
TGAATGCTCACAAATCCTAAAAGCAGTCCTAGCTAACAACTGGGTCTTTT
TTTTCAATCGCCTTCAAAAGAGTGCGATTGTTCACTTGGCGACTGATGGA
CGCGTAAGACAGATCCTCGAGGGGTTGGTTCCTTTTATGAGAGAAAGGGC
TCTTGTGACAATGTTGAAAATGAGCGCTTGGATTGAAAGCCCCGTATATT
CTCTGCCGAATTTGTTTCCCTTGGAAAGTGTCGTAAGAATTTTAGGATGG
AATCAAACAACTGTAGACGATCCCAATTTTGGTCCAAACGAGGCGAAGCA
TTTCATATCTTCACTGCCCCACAATTTTGCCATTTTAGGGGGAGAAGTTC
ATGACTGGCGAAGTGCTTATCTCCGTGCCGACGAAGAAGAAGTCAGACTT
CAGCGTTCTGATATCAATGTCGATTCTCTCCTTGTGTGGAGTGGGCGCAG
TTGTTCAGCAGTGCCTGAGAAAAACTTTTAA
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protein sequence of Gchil5666.t1

>Gchil5666.t1 ID=Gchil5666.t1|Name=Gchil5666.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=827bp
MSSSQGSGNRFSGEMFYQLFGKSRGRGRGRGRGRGQSRGRSRGNGLGRGH
DDQFRRAELNNHNYYHEQQQGPRQAPHRDSTNGGVSYQRGKRKRYFSDAM
PPGPPPPSRPPQYNPNHSFIPKDPPSKPPIEDPDMQRKRRDKKAPRGGFI
PKVDKEQEYQIDLYCYICDLSFYDPSCKTSHDRSRGHIKQYQHLRNSGLL
DEEGNRVERQISEEEFRKQMTEEQLRKKREEQLSEKASMFCQEDLNKWPR
EFKDWATRSLRNANALARAENDKRITAAVRAEIRAVYDHHEKHCTLRREP
WCQRPLATGELYGKIEDIKPNVLVVHEDQLVKRPQLSTNGTDHPAPSKDP
LATNVDGAKDDTVMRTEPTRDVGHGRDPLMHQSMEIERKNNDSGRLSRGL
VAGIDYSLYPQYGEATPHLIRNNEERVNRQKLAIAEEPHTRHGYETHMSV
YMPHKRLTEKQPRIQEDKPRIKEQSFGWTMSAESKDLQLACRVSKEKDFY
LVKCHERFGSSFDWWEPADDTVRTREGITQMLEKVSTLKKEYENGEYEYG
KLCSQLSELVADLRDRGTRIGTVLECIRMQISAALQVGSFNDFAKHCSEF
MKSVKQLTEWGDLDYEFVGHWLLSMLFLCVKDNGRRSILKKPQTMLRAAE
EMRSFPARQVLHDMRVFECSQILKAVLANNWVFFFNRLQKSAIVHLATDG
RVRQILEGLVPFMRERALVTMLKMSAWIESPVYSLPNLFPLESVVRILGW
NQTTVDDPNFGPNEAKHFISSLPHNFAILGGEVHDWRSAYLRADEEEVRL
QRSDINVDSLLVWSGRSCSAVPEKNF*
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mRNA from alignment at tig00000015_pilon:626039..628519-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5666.t1 ID=Gchil5666.t1|Name=Gchil5666.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2481bp|location=Sequence derived from alignment at tig00000015_pilon:626039..628519- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTCATCTCAAGGCTCTGGAAATCGGTTTTCTGGGGAGATGTTCTA
TCAACTCTTCGGAAAAAGTCGCGGTCGCGGTCGCGGTCGTGGTCGCGGTC
GTGGTCAGAGTCGCGGCCGAAGTCGAGGTAATGGTCTAGGTCGTGGCCAT
GATGATCAATTCAGACGAGCCGAGCTCAACAACCATAATTACTATCATGA
ACAGCAACAGGGACCTCGTCAGGCTCCGCATCGTGACTCAACAAACGGAG
GTGTAAGTTACCAACGTGGAAAGAGAAAACGCTATTTCAGTGACGCTATG
CCACCCGGTCCCCCCCCTCCATCCCGCCCACCTCAATATAATCCTAACCA
CTCTTTCATTCCGAAAGATCCGCCATCAAAGCCGCCGATTGAAGACCCAG
ACATGCAAAGAAAAAGGAGAGACAAAAAAGCTCCTCGCGGCGGTTTCATT
CCAAAAGTGGACAAAGAACAAGAGTACCAAATCGACCTGTATTGTTATAT
ATGTGATTTATCATTCTATGACCCGTCTTGTAAGACATCTCATGATCGTA
GCAGAGGTCATATAAAACAATATCAACATTTGAGAAACTCTGGACTTCTT
GATGAGGAAGGTAACAGAGTAGAGCGTCAAATTAGTGAGGAAGAATTTCG
GAAACAAATGACGGAAGAGCAATTGAGAAAGAAAAGAGAGGAACAGCTTT
CTGAAAAAGCTTCGATGTTCTGTCAAGAGGATTTAAACAAGTGGCCAAGA
GAATTTAAGGATTGGGCAACCCGCTCTCTTCGAAATGCCAATGCCCTAGC
GCGTGCCGAGAATGACAAAAGAATCACTGCTGCAGTTCGTGCTGAGATCC
GGGCTGTTTATGATCATCATGAAAAACACTGTACACTACGACGAGAACCA
TGGTGTCAGAGACCGCTTGCTACTGGTGAATTGTATGGAAAGATCGAGGA
CATCAAACCAAACGTGCTTGTAGTTCATGAAGATCAGCTTGTTAAACGCC
CTCAGCTTTCCACGAACGGTACGGACCATCCCGCTCCATCGAAGGATCCA
CTCGCAACCAATGTTGATGGTGCCAAAGACGATACCGTGATGAGAACTGA
GCCAACCCGAGATGTGGGTCACGGGAGAGATCCTCTTATGCATCAGTCGA
TGGAAATTGAGCGGAAGAATAACGATTCTGGTAGACTTAGTCGAGGTCTA
GTTGCTGGAATCGACTACAGCTTGTATCCTCAATATGGAGAAGCTACTCC
TCATCTGATAAGAAATAACGAGGAAAGAGTAAATCGTCAAAAACTGGCTA
TTGCTGAGGAACCACATACAAGGCATGGATATGAAACGCATATGTCAGTA
TACATGCCTCACAAAAGGCTCACGGAAAAGCAACCTAGAATTCAAGAAGA
CAAACCTCGGATCAAGGAACAGAGTTTCGGTTGGACCATGTCCGCAGAAT
CAAAAGATCTTCAGCTTGCCTGTAGAGTATCAAAGGAAAAAGACTTCTAT
CTGGTCAAATGCCACGAGCGCTTCGGATCTTCTTTCGACTGGTGGGAGCC
AGCAGATGATACTGTTCGAACTCGTGAAGGAATAACTCAAATGCTTGAGA
AAGTTAGCACCTTGAAAAAGGAATACGAGAATGGAGAATATGAGTATGGA
AAACTTTGCAGTCAACTTTCAGAGTTGGTAGCGGATTTACGTGATCGTGG
AACTAGAATTGGTACGGTTTTAGAATGTATTCGTATGCAGATTTCCGCCG
CACTCCAGGTTGGCTCTTTCAATGATTTTGCAAAACACTGCTCAGAATTT
ATGAAATCGGTCAAGCAGTTGACGGAATGGGGGGATTTGGACTACGAGTT
TGTCGGTCACTGGCTTCTATCGATGTTATTTTTATGTGTGAAGGACAATG
GTCGTCGTAGCATTTTGAAAAAACCTCAGACAATGCTTCGAGCTGCCGAA
GAAATGCGTTCTTTTCCGGCTAGGCAGGTTTTACATGATATGAGAGTGTT
TGAATGCTCACAAATCCTAAAAGCAGTCCTAGCTAACAACTGGGTCTTTT
TTTTCAATCGCCTTCAAAAGAGTGCGATTGTTCACTTGGCGACTGATGGA
CGCGTAAGACAGATCCTCGAGGGGTTGGTTCCTTTTATGAGAGAAAGGGC
TCTTGTGACAATGTTGAAAATGAGCGCTTGGATTGAAAGCCCCGTATATT
CTCTGCCGAATTTGTTTCCCTTGGAAAGTGTCGTAAGAATTTTAGGATGG
AATCAAACAACTGTAGACGATCCCAATTTTGGTCCAAACGAGGCGAAGCA
TTTCATATCTTCACTGCCCCACAATTTTGCCATTTTAGGGGGAGAAGTTC
ATGACTGGCGAAGTGCTTATCTCCGTGCCGACGAAGAAGAAGTCAGACTT
CAGCGTTCTGATATCAATGTCGATTCTCTCCTTGTGTGGAGTGGGCGCAG
TTGTTCAGCAGTGCCTGAGAAAAACTTTTAA
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Coding sequence (CDS) from alignment at tig00000015_pilon:626039..628519-

>Gchil5666.t1 ID=Gchil5666.t1|Name=Gchil5666.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2481bp|location=Sequence derived from alignment at tig00000015_pilon:626039..628519- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTCATCTCAAGGCTCTGGAAATCGGTTTTCTGGGGAGATGTTCTA
TCAACTCTTCGGAAAAAGTCGCGGTCGCGGTCGCGGTCGTGGTCGCGGTC
GTGGTCAGAGTCGCGGCCGAAGTCGAGGTAATGGTCTAGGTCGTGGCCAT
GATGATCAATTCAGACGAGCCGAGCTCAACAACCATAATTACTATCATGA
ACAGCAACAGGGACCTCGTCAGGCTCCGCATCGTGACTCAACAAACGGAG
GTGTAAGTTACCAACGTGGAAAGAGAAAACGCTATTTCAGTGACGCTATG
CCACCCGGTCCCCCCCCTCCATCCCGCCCACCTCAATATAATCCTAACCA
CTCTTTCATTCCGAAAGATCCGCCATCAAAGCCGCCGATTGAAGACCCAG
ACATGCAAAGAAAAAGGAGAGACAAAAAAGCTCCTCGCGGCGGTTTCATT
CCAAAAGTGGACAAAGAACAAGAGTACCAAATCGACCTGTATTGTTATAT
ATGTGATTTATCATTCTATGACCCGTCTTGTAAGACATCTCATGATCGTA
GCAGAGGTCATATAAAACAATATCAACATTTGAGAAACTCTGGACTTCTT
GATGAGGAAGGTAACAGAGTAGAGCGTCAAATTAGTGAGGAAGAATTTCG
GAAACAAATGACGGAAGAGCAATTGAGAAAGAAAAGAGAGGAACAGCTTT
CTGAAAAAGCTTCGATGTTCTGTCAAGAGGATTTAAACAAGTGGCCAAGA
GAATTTAAGGATTGGGCAACCCGCTCTCTTCGAAATGCCAATGCCCTAGC
GCGTGCCGAGAATGACAAAAGAATCACTGCTGCAGTTCGTGCTGAGATCC
GGGCTGTTTATGATCATCATGAAAAACACTGTACACTACGACGAGAACCA
TGGTGTCAGAGACCGCTTGCTACTGGTGAATTGTATGGAAAGATCGAGGA
CATCAAACCAAACGTGCTTGTAGTTCATGAAGATCAGCTTGTTAAACGCC
CTCAGCTTTCCACGAACGGTACGGACCATCCCGCTCCATCGAAGGATCCA
CTCGCAACCAATGTTGATGGTGCCAAAGACGATACCGTGATGAGAACTGA
GCCAACCCGAGATGTGGGTCACGGGAGAGATCCTCTTATGCATCAGTCGA
TGGAAATTGAGCGGAAGAATAACGATTCTGGTAGACTTAGTCGAGGTCTA
GTTGCTGGAATCGACTACAGCTTGTATCCTCAATATGGAGAAGCTACTCC
TCATCTGATAAGAAATAACGAGGAAAGAGTAAATCGTCAAAAACTGGCTA
TTGCTGAGGAACCACATACAAGGCATGGATATGAAACGCATATGTCAGTA
TACATGCCTCACAAAAGGCTCACGGAAAAGCAACCTAGAATTCAAGAAGA
CAAACCTCGGATCAAGGAACAGAGTTTCGGTTGGACCATGTCCGCAGAAT
CAAAAGATCTTCAGCTTGCCTGTAGAGTATCAAAGGAAAAAGACTTCTAT
CTGGTCAAATGCCACGAGCGCTTCGGATCTTCTTTCGACTGGTGGGAGCC
AGCAGATGATACTGTTCGAACTCGTGAAGGAATAACTCAAATGCTTGAGA
AAGTTAGCACCTTGAAAAAGGAATACGAGAATGGAGAATATGAGTATGGA
AAACTTTGCAGTCAACTTTCAGAGTTGGTAGCGGATTTACGTGATCGTGG
AACTAGAATTGGTACGGTTTTAGAATGTATTCGTATGCAGATTTCCGCCG
CACTCCAGGTTGGCTCTTTCAATGATTTTGCAAAACACTGCTCAGAATTT
ATGAAATCGGTCAAGCAGTTGACGGAATGGGGGGATTTGGACTACGAGTT
TGTCGGTCACTGGCTTCTATCGATGTTATTTTTATGTGTGAAGGACAATG
GTCGTCGTAGCATTTTGAAAAAACCTCAGACAATGCTTCGAGCTGCCGAA
GAAATGCGTTCTTTTCCGGCTAGGCAGGTTTTACATGATATGAGAGTGTT
TGAATGCTCACAAATCCTAAAAGCAGTCCTAGCTAACAACTGGGTCTTTT
TTTTCAATCGCCTTCAAAAGAGTGCGATTGTTCACTTGGCGACTGATGGA
CGCGTAAGACAGATCCTCGAGGGGTTGGTTCCTTTTATGAGAGAAAGGGC
TCTTGTGACAATGTTGAAAATGAGCGCTTGGATTGAAAGCCCCGTATATT
CTCTGCCGAATTTGTTTCCCTTGGAAAGTGTCGTAAGAATTTTAGGATGG
AATCAAACAACTGTAGACGATCCCAATTTTGGTCCAAACGAGGCGAAGCA
TTTCATATCTTCACTGCCCCACAATTTTGCCATTTTAGGGGGAGAAGTTC
ATGACTGGCGAAGTGCTTATCTCCGTGCCGACGAAGAAGAAGTCAGACTT
CAGCGTTCTGATATCAATGTCGATTCTCTCCTTGTGTGGAGTGGGCGCAG
TTGTTCAGCAGTGCCTGAGAAAAACTTTTAA
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