Gchil5666.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5666.t1
Unique NameGchil5666.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length827
Homology
BLAST of Gchil5666.t1 vs. uniprot
Match: A0A2V3IGV5_9FLOR (C2H2-type domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IGV5_9FLOR)

HSP 1 Score: 578 bits (1489), Expect = 5.050e-192
Identity = 348/858 (40.56%), Postives = 491/858 (57.23%), Query Frame = 0
Query:    1 MSSSQGSGNRFSGEMFYQLFGKSRXXXXXXXXXXXXXXXXXXXXXXXRGHDDQFRRAELNN----HNYYHEQQQGPRQAPHRDSTNGG---VSYQRGKRKRYFSDAMPPGPPPPSRPPQYNPNHSFIPKDPPXXXPI------EDPDMQRKRRDKKAPRGGFIPKVDKEQEYQIDLYCYICDLSFYDPSCKTSHDRSRGHIKQYQHLRNSGLLDEEGNRVERQISEEEFRKQMXXXXXXXXREEQLSEKASMFCQEDLNKWPREFKDWATRSLRNANALARAENDKRITAAVRAEIRAVYDHHEKHCTLRREPWCQRPLATGELYGKIEDIKPNVLVVHEDQLVKRPQLSTNGTDHPAPSKDPLATNVDGA---KDDTVMRTEPTRDVGHGRDPLMHQSMEIERKNNDSGRL---------SRGLVAGI-----DYSLYPQY------GEATPHLIRNNEERVNRQKLAIAEEPHTRHGYETHMSVYMPHKRLTEKQPRXXXXXXXXKEQSFGWTMSAESKDLQLACRVSKEKDFYLVKCHERFGSSFDWWEPADDTVRTREGITQMLEKVSTLKKEYENGEYEYGKLCSQLSELVADLRDRGTRIGTVLECIRMQISAALQVGSFNDFAKHCSEFMKSVKQLTEWGDLDYEFVGHWLLSMLFLCVKDNGRRSILKKPQTMLRAAEEMRSFPARQ-VLHDMRVFECSQILKAVLANNWVFFFNRLQKSAIVHLATDGRVRQILEGLVPFMRERALVTMLKMSAWIESPVYSLPNLFPLESVVRILGWNQTTVDDPNFGPNEAKHFISSLPHNFAILGGEVHDWRSAYLRADEEEVRLQRS-DINVDSLLVWSGRSCSA 820
            MSS Q   NR+S EMFY LF                              D+  R+A   N       ++  +Q P   P R+S       + YQ   RKRYF +     P  P R       H+ I +DP    P         P +Q++RR+K+ PRGGFIPKVDKEQEYQ DLYC IC+LSFY P+ K  HDRSR H ++YQ LRN+G LDE+GN    QISEE+FRKQ          E+QL   + MF QE++N+WP+ FK+W  RSL +A  ++R E++ +I AAVRAEIR V DHH KHCTLR+E W Q+PLATG LY K   I+ NVL+VHEDQLVK PQ    G +     + P A   D     + DT+   +     G  R    HQS    R ++ S +          S  L + +     D +++ Q+      G   P  + +++  +N +   +   P+ R+   ++   + PH     + P         KE    W MS E++ L  A +V+ +K  +L KC ER G     W+    + + R  + ++L++V TLKK++ + EYEY KLCS+LS ++  L +RGTR+GT+ ECIR+Q+ AA+Q+GSF DFAK+ S FMK  ++ ++W   + EFVGHWLLS+LF   +D       +  + +L  AEEMR++P +  +++D+ VFE +Q+ K+VL+NNW FFF+RLQ S IVH AT+GR +Q++EG +PF+RERALVTM + S W ++ V++ PN+  L +V+  LGWN+   D  +    EA  FI+SLP+ F ILGG  HDWRSAY+RAD++EV+LQ + D+ V +L  WSG  C+A
Sbjct:    1 MSSPQDRSNRYSAEMFYHLFS-----------------------------DNDRRQAARRNPPRSQQPHNRSRQRPLHPPRRNSQQPPTVPLPYQSSSRKRYFQNRQSQSPNLPDRT-----LHAHISRDPNSSNPTPASPESSSPAVQKRRREKRPPRGGFIPKVDKEQEYQTDLYCAICELSFYTPAEKALHDRSRDHAREYQFLRNAGRLDEQGNPKPLQISEEDFRKQFATVRTPEQVEKQLQNASIMFPQEEVNRWPKAFKEWVKRSLDDAVRVSRMESNSKILAAVRAEIRVVLDHHTKHCTLRKESWVQKPLATGALYTKDSGIQHNVLLVHEDQLVK-PQPGQAGQEQSQADQPPEAQLDDAQTKMETDTLTEKQSNEPRGDARQRTRHQSRSTARHSSHSMKTVTQWSSRDTSHNLASHMPHRLRDSNVHYQHRTEQSRGSEAPSPVPSSQVPLNARNPQVPYLPYDRYAVPSYQ--HDPHTLHLSRVPSPPEVMY--KELQQNWRMSGEAEILFHASKVA-DKQLFLAKCGERLGQ-LQIWDSGTSSSQDRIDVEEVLQRVETLKKQFTSREYEYHKLCSELSAVIKILTERGTRVGTIQECIRIQMYAAIQMGSFGDFAKYSSHFMKVGRRASQWSGANLEFVGHWLLSLLFSYKEDRIYPRQREPERALLHIAEEMRNYPFKHGLMNDLCVFESAQVFKSVLSNNWAFFFHRLQNS-IVHYATEGRFKQVMEGFIPFVRERALVTMFRKSCWSDTAVFAEPNVVALATVINFLGWNERDADQ-SVSFLEATKFITSLPYKFVILGGNAHDWRSAYIRADDDEVKLQDNPDVAVVALTAWSGHECAA 815          
BLAST of Gchil5666.t1 vs. uniprot
Match: R7Q914_CHOCR (C2H2-type domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q914_CHOCR)

HSP 1 Score: 142 bits (359), Expect = 1.110e-31
Identity = 140/552 (25.36%), Postives = 239/552 (43.30%), Query Frame = 0
Query:  233 LSEKASMFCQEDLNKWPREFKDWATRSLRNANALARAENDKRITAAVRAEIRAVYDHHEKHCTLRREPWCQRPLATGELYGKIEDIKPNVLVVHEDQLVK-----RPQLSTNGTDHPAPSKDPLATNVDGAKDDTVMRTEPTRDVGHGRDPLMHQSMEIERKNNDSGRLSRGLVAGIDYSLYPQYGEATPHLIRNNEERVNRQKLAIAEEPHTRHGYETHMSVYMPHKRLTEKQPRXXXXXXXXKEQSFGWTMSAESKDLQLACRVSKEKDFYLVKCHERFGSSFDWWEPADDTVRTREGITQMLEKVSTLKKEYENGEYEYGKLCSQLSELVADLRDRGTRIGTVLECIRMQISAALQVGSFNDFAKHCSEFMKSVKQLTEWGDLDYEFVGHWLLSMLFLCVKD-NGRRSILKKPQTMLRAAEEMRSFPARQVLHDMRVFECSQILKAVLANNWVFFFNRLQKSAIVHLATDGRVRQILEGLVPFMRERALVTMLKMSAWIESPVYSLPNLFPLESVVRILGWNQTTVDDPNFGPNEAKHFISSLPHNFAI 778
            L E A+ F +E   KW + FK WA RS+  A A A A ND+ I A+V+ EI   + +H  +CT+ +E W ++P ATG  Y + +       V  E +  K     R  L T+      PS   LA  V  A + TV            RD L+  + E++   + + +      +G                   + ERVN     I  EP+          + +P +++ E   +              W +S  +  L   C  S   +   V+  +RF  ++   +     V   +    ++ K   L+ +YE+ E++Y      L E+++    +  RIG++ +C+ MQI AA++ G +      C+  ++       + + D E++G+W++S LF        R +   + + +      +R+ P   V+ DM V     + K  ++NN+ + F +LQ   +V + T G  R++ E +  F+RERALVTM  +S       YS P     E V+R L W+  +  + N   +E++ FI  LP    I
Sbjct:  129 LKEMAA-FVKEHAAKWTKSFKGWANRSIEGAKAAADAANDQNIVASVQREILFEFRYHTDNCTMMQESWGRKPAATGIHYRQAQPSVFTDRVFSEKEKRKMDEERRQALLTH------PSSTDLAEIVSAAPNPTVEEV---------RDDLV-LAPEVQGGISSAAKNPTSAPSG-----------------NEDIERVNVSSDRI-REPN---------QLALPERQIIEAPVKV------------SWKLSQAACVLSSICN-SGISEAVAVRYRQRFPRTWRTSKSHSGQVPNND----LVMKYRDLRSKYESQEFDYNSWRRGLDEVISGFTAQENRIGSLKQCLHMQIDAAIRRGDWTGCTISCAHVIEFHNSHDSFEEGDGEYIGYWIISGLFKAQHGLQPRLTSRARQKRLFSLVTRLRALPPG-VMDDMFVDHAYAMFKCAVSNNY-YQFCQLQADPMVDMKTGGNFRRMTEKVGDFVRERALVTMTMLSGITNEGCYSNPMAVDFEFVMRSLKWSNQS-GEKNI--SESRRFIEGLPQEIRI 614          
The following BLAST results are available for this feature:
BLAST of Gchil5666.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IGV5_9FLOR5.050e-19240.56C2H2-type domain-containing protein n=1 Tax=Gracil... [more]
R7Q914_CHOCR1.110e-3125.36C2H2-type domain-containing protein n=1 Tax=Chondr... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 211..231
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..87
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..151
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..126
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 334..360
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 44..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..151
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 144..194

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:626039..628519 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5666.t1Gchil5666.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000015_pilon 626039..628519 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5666.t1 ID=Gchil5666.t1|Name=Gchil5666.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=827bp
MSSSQGSGNRFSGEMFYQLFGKSRGRGRGRGRGRGQSRGRSRGNGLGRGH
DDQFRRAELNNHNYYHEQQQGPRQAPHRDSTNGGVSYQRGKRKRYFSDAM
PPGPPPPSRPPQYNPNHSFIPKDPPSKPPIEDPDMQRKRRDKKAPRGGFI
PKVDKEQEYQIDLYCYICDLSFYDPSCKTSHDRSRGHIKQYQHLRNSGLL
DEEGNRVERQISEEEFRKQMTEEQLRKKREEQLSEKASMFCQEDLNKWPR
EFKDWATRSLRNANALARAENDKRITAAVRAEIRAVYDHHEKHCTLRREP
WCQRPLATGELYGKIEDIKPNVLVVHEDQLVKRPQLSTNGTDHPAPSKDP
LATNVDGAKDDTVMRTEPTRDVGHGRDPLMHQSMEIERKNNDSGRLSRGL
VAGIDYSLYPQYGEATPHLIRNNEERVNRQKLAIAEEPHTRHGYETHMSV
YMPHKRLTEKQPRIQEDKPRIKEQSFGWTMSAESKDLQLACRVSKEKDFY
LVKCHERFGSSFDWWEPADDTVRTREGITQMLEKVSTLKKEYENGEYEYG
KLCSQLSELVADLRDRGTRIGTVLECIRMQISAALQVGSFNDFAKHCSEF
MKSVKQLTEWGDLDYEFVGHWLLSMLFLCVKDNGRRSILKKPQTMLRAAE
EMRSFPARQVLHDMRVFECSQILKAVLANNWVFFFNRLQKSAIVHLATDG
RVRQILEGLVPFMRERALVTMLKMSAWIESPVYSLPNLFPLESVVRILGW
NQTTVDDPNFGPNEAKHFISSLPHNFAILGGEVHDWRSAYLRADEEEVRL
QRSDINVDSLLVWSGRSCSAVPEKNF*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036236Znf_C2H2_sf