Gchil1431.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1431.t1
Unique NameGchil1431.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length219
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004414_piloncontigtig00004414_pilon:1104001..1105656 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1431Gchil1431Gracilaria chilensis NLEC103_M9 malegenetig00004414_pilon 1104001..1105656 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1431.t1Gchil1431.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004414_pilon 1104001..1105656 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1431.t1.CDS1Gchil1431.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 1104001..1104003 -
Gchil1431.t1.CDS2Gchil1431.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 1104758..1104845 -
Gchil1431.t1.CDS3Gchil1431.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 1104920..1105060 -
Gchil1431.t1.CDS4Gchil1431.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 1105156..1105285 -
Gchil1431.t1.CDS5Gchil1431.t1.CDS5Gracilaria chilensis NLEC103_M9 maleCDStig00004414_pilon 1105362..1105656 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1431.t1.exon1Gchil1431.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 1104001..1104003 -
Gchil1431.t1.exon2Gchil1431.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 1104758..1104845 -
Gchil1431.t1.exon3Gchil1431.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 1104920..1105060 -
Gchil1431.t1.exon4Gchil1431.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 1105156..1105285 -
Gchil1431.t1.exon5Gchil1431.t1.exon5Gracilaria chilensis NLEC103_M9 maleexontig00004414_pilon 1105362..1105656 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1431.t1.stop1Gchil1431.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004414_pilon 1104001..1104003 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1431.t1.intron1Gchil1431.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004414_pilon 1104004..1104757 -
Gchil1431.t1.intron2Gchil1431.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004414_pilon 1104846..1104919 -
Gchil1431.t1.intron3Gchil1431.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00004414_pilon 1105061..1105155 -
Gchil1431.t1.intron4Gchil1431.t1.intron4Gracilaria chilensis NLEC103_M9 maleintrontig00004414_pilon 1105286..1105361 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1431.t1.start1Gchil1431.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004414_pilon 1105654..1105656 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1431.t1 ID=Gchil1431.t1|Name=Gchil1431.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=219bp
MTPRSPKNAEDFLFVPSGGSNAACVGCSIRVFGTDGKSWLSIFALFVMFS
SLKIVDRRFAVPHPFHPLPNITSRLLRYRHYLLKNPTLYRLRKALQSTMM
KMLMLSDENIVNDGNTTRQWIVNLILTTTALFLVLSYEASMTASLVQESI
EAQFESTADLLYCRMDPSDICLLKGGALEKYWEKSIAIDKCHFENPPKYF
FSYQSLFEAVDNHQCKYA*
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spliced messenger RNA

>Gchil1431.t1 ID=Gchil1431.t1|Name=Gchil1431.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=657bp|location=Sequence derived from alignment at tig00004414_pilon:1104001..1105656- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCCCCAGATCCCCGAAGAATGCAGAAGATTTTCTTTTCGTTCCTTC
TGGCGGCTCTAATGCTGCCTGCGTTGGCTGTTCAATACGGGTTTTCGGCA
CAGACGGTAAATCTTGGTTGTCTATTTTTGCCTTGTTCGTTATGTTTTCG
TCATTGAAGATTGTTGACCGTCGCTTTGCTGTACCTCATCCATTTCACCC
TCTTCCGAACATAACCTCCAGACTTCTGCGGTACCGACACTACCTCTTGA
AGAACCCCACACTTTATCGGCTGAGAAAGGCGTTACAGAGCACGATGATG
AAAATGCTGATGCTTTCTGACGAGAATATTGTTAACGATGGTAACACCAC
TCGCCAGTGGATTGTTAACCTTATACTCACCACTACTGCTCTGTTTCTCG
TGTTGTCGTATGAAGCGAGCATGACGGCATCACTGGTGCAGGAGTCCATC
GAAGCCCAATTTGAATCAACTGCAGATCTCTTGTACTGCCGTATGGATCC
GTCGGATATATGTTTACTAAAAGGCGGAGCTCTCGAAAAATATTGGGAGA
AATCGATTGCTATAGACAAATGCCACTTTGAGAACCCTCCGAAATACTTC
TTTTCTTACCAGTCATTATTTGAAGCTGTTGACAACCATCAGTGCAAATA
TGCTTAA
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protein sequence of Gchil1431.t1

>Gchil1431.t1 ID=Gchil1431.t1|Name=Gchil1431.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=219bp
MTPRSPKNAEDFLFVPSGGSNAACVGCSIRVFGTDGKSWLSIFALFVMFS
SLKIVDRRFAVPHPFHPLPNITSRLLRYRHYLLKNPTLYRLRKALQSTMM
KMLMLSDENIVNDGNTTRQWIVNLILTTTALFLVLSYEASMTASLVQESI
EAQFESTADLLYCRMDPSDICLLKGGALEKYWEKSIAIDKCHFENPPKYF
FSYQSLFEAVDNHQCKYA*
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mRNA from alignment at tig00004414_pilon:1104001..1105656-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1431.t1 ID=Gchil1431.t1|Name=Gchil1431.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1656bp|location=Sequence derived from alignment at tig00004414_pilon:1104001..1105656- (Gracilaria chilensis NLEC103_M9 male)
ATGACCCCCAGATCCCCGAAGAATGCAGAAGATTTTCTTTTCGTTCCTTC
TGGCGGCTCTAATGCTGCCTGCGTTGGCTGTTCAATACGGGTTTTCGGCA
CAGACGGTAAATCTTGGTTGTCTATTTTTGCCTTGTTCGTTATGTTTTCG
TCATTGAAGATTGTTGACCGTCGCTTTGCTGTACCTCATCCATTTCACCC
TCTTCCGAACATAACCTCCAGACTTCTGCGGTACCGACACTACCTCTTGA
AGAACCCCACACTTTATCGGCTGAGAAAGGCGTTACAGAGCACGAGTACG
TCCAGGTTCATTCGATGGCATCGTTGTATTCGCACTCTAACCTCCTATTG
AAAATTACATCTTTCTTATAGTGATGAAAATGCTGATGCTTTCTGACGAG
AATATTGTTAACGATGGTAACACCACTCGCCAGTGGATTGTTAACCTTAT
ACTCACCACTACTGCTCTGTTTCTCGTGTTGTCGTATGAAGCGAGCATGA
CGTAAGTATATCACTTGTTTGCGACTTTCTAAATCCAAAAAATAATACAT
GCTTACCACACCCGTTCTGTTTCGTGTCCGTCCACAATTACATCAGGGCA
TCACTGGTGCAGGAGTCCATCGAAGCCCAATTTGAATCAACTGCAGATCT
CTTGTACTGCCGTATGGATCCGTCGGATATATGTTTACTAAAAGGCGGAG
CTCTCGAAAAATATTGGGAGAAATCGATTGCTATAGAGTATGTGTTTTAC
TTTCTTTGCCTGACACTTACAGAAGAAGAATCTGACCGATGCCCTTGTTA
CTATCCGGTAGCAAATGCCACTTTGAGAACCCTCCGAAATACTTCTTTTC
TTACCAGTCATTATTTGAAGCTGTTGACAACCATCAGTGCAAATATGCTG
TCATTATTGAATCTGCCGTCACATCCATGATTCGAAATAGGTATTGCGGA
AAGTTTGTAATTGTTGGGAAGCCCATCTTCACCGGCGGGTTGTCCATGCT
GCTCCCAAAGGGAAGTAATCTGACAGAAGGAATGAGTCGAGTCACACTTG
ATCTGGTAGGGAATCGTACAACGTCTTACATTTCCGCTTTCTTTGACCAT
CTACCGCTCTGCAGAACGGAAGTGGCAACCTTGCTCAGCTTCATGAAGCT
TCGCTGGTTCTTCTTCACAGCATTTTCAGTCGGAGGGGCTTTGCTTCTTG
CGCTTGTGATCATTCCCCAGAAAGCAGACGAGGAAGTTTAAATCCTGATC
TTTTTAAACTATTTCTGCTTGCAGTATTCTTTTTTGCTGAAAATGTATAT
ATGAGCGAAGTTCCACACCACATATTTATTTAGTATTCTTTACGTGGAAA
AATTTTGAAATAGCTGTGATACGATCGTTCTTAAACTGATTGTATTTTAT
TCTCATGAAAAACTCTTTAAAACCCAAGAATTAAAGCGGACTTCACATTT
CGCAGTACTTACTTTTTGTACGAGGCATCAGACCCAAATGTATTGTTGGT
AATCATCAAAAGTATTCGATAAAAAGCAGATACATTCCCAGCATAAGTAT
CATAGAATGTGTTTTTGACTCCAGCGACTGACTTTGAAAGAGTTCATAAG
TTTTTGACGCTACATGATTTGTTTTTCATATTCATTACATGCTTTTGTTT
TAGTAA
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Coding sequence (CDS) from alignment at tig00004414_pilon:1104001..1105656-

>Gchil1431.t1 ID=Gchil1431.t1|Name=Gchil1431.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=657bp|location=Sequence derived from alignment at tig00004414_pilon:1104001..1105656- (Gracilaria chilensis NLEC103_M9 male)
ATGACCCCCAGATCCCCGAAGAATGCAGAAGATTTTCTTTTCGTTCCTTC
TGGCGGCTCTAATGCTGCCTGCGTTGGCTGTTCAATACGGGTTTTCGGCA
CAGACGGTAAATCTTGGTTGTCTATTTTTGCCTTGTTCGTTATGTTTTCG
TCATTGAAGATTGTTGACCGTCGCTTTGCTGTACCTCATCCATTTCACCC
TCTTCCGAACATAACCTCCAGACTTCTGCGGTACCGACACTACCTCTTGA
AGAACCCCACACTTTATCGGCTGAGAAAGGCGTTACAGAGCACGATGATG
AAAATGCTGATGCTTTCTGACGAGAATATTGTTAACGATGGTAACACCAC
TCGCCAGTGGATTGTTAACCTTATACTCACCACTACTGCTCTGTTTCTCG
TGTTGTCGTATGAAGCGAGCATGACGGCATCACTGGTGCAGGAGTCCATC
GAAGCCCAATTTGAATCAACTGCAGATCTCTTGTACTGCCGTATGGATCC
GTCGGATATATGTTTACTAAAAGGCGGAGCTCTCGAAAAATATTGGGAGA
AATCGATTGCTATAGACAAATGCCACTTTGAGAACCCTCCGAAATACTTC
TTTTCTTACCAGTCATTATTTGAAGCTGTTGACAACCATCAGTGCAAATA
TGCTTAA
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