Gchil2848.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2848.t1
Unique NameGchil2848.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length500
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004406_piloncontigtig00004406_pilon:908148..909647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2848Gchil2848Gracilaria chilensis NLEC103_M9 malegenetig00004406_pilon 908148..909647 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2848.t1.start1Gchil2848.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004406_pilon 908148..908150 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2848.t1.CDS1Gchil2848.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004406_pilon 908148..909647 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2848.t1.exon1Gchil2848.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004406_pilon 908148..909647 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2848.t1.stop1Gchil2848.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004406_pilon 909645..909647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2848.t1Gchil2848.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004406_pilon 908148..909647 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2848.t1 ID=Gchil2848.t1|Name=Gchil2848.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=500bp
MSNPSRRRERSASLPVDAWRQVASHLSTSDLSNLALVSKSCRVAALSPDL
FAKHIYCQPQSDLLSTTGYQAIYRNSKSLRHAPTTSTIHSRQYKRVNLGI
LGSISRYLILYNEREGIVSCLPAGWRRRVSELLLEESDHTDASYGQIPLF
PRQEFVAARFLEMPDCKIGFFCTGGTGCRGQLVTICGRTGQTTEQVFVPL
NEAHTGINFSIGTEKQKLTLLGGVGSQYLVYYTKKSFNVIQRNTGRIVKK
WPRMPEAMLIRGETTCNAPLITGVVTCETVGDRKHYHIHPLEGGAAEYSF
SIDTEDQLIDVTRSRDGKTITKRIVSDGVVKLWTVVHRNAIFHWLQGLRV
SNKSGEVEMRSNGSQVFMRPGGGDGRIIRFTYSSVVRVDKIARRVQGMSF
DWARASWDGRIVLAVSRKGGFISIFDCDEGRCLKSISIGDEIGDLVLVDG
HLLVCFTAKNIIECHFKRFCKCLGAFGELCRSEEQKAGSTDKRMNAEVL*
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spliced messenger RNA

>Gchil2848.t1 ID=Gchil2848.t1|Name=Gchil2848.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1500bp|location=Sequence derived from alignment at tig00004406_pilon:908148..909647+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTAATCCAAGTCGAAGGCGAGAGAGATCTGCATCTCTTCCAGTGGA
TGCCTGGCGCCAAGTGGCATCCCATCTTTCCACATCAGACCTCAGCAACT
TAGCGCTGGTTTCCAAGTCATGCAGAGTAGCGGCTTTATCTCCCGACTTG
TTCGCGAAACATATATACTGCCAGCCCCAAAGCGATTTGCTTTCAACCAC
AGGCTATCAAGCCATATACCGCAACTCAAAGTCACTGCGGCATGCTCCGA
CGACGTCTACCATCCATTCCCGTCAATACAAACGCGTCAATCTGGGTATC
CTTGGTTCCATTTCACGCTATCTAATTCTCTACAATGAAAGAGAAGGAAT
TGTTAGCTGCCTCCCAGCTGGTTGGCGTCGTCGTGTTTCAGAACTGCTTT
TGGAAGAATCTGACCACACAGATGCATCATACGGTCAAATCCCATTGTTT
CCGCGACAAGAATTTGTTGCTGCGAGGTTTCTAGAAATGCCGGACTGTAA
AATAGGTTTCTTTTGTACTGGTGGCACTGGTTGTAGGGGTCAACTGGTCA
CAATATGTGGAAGGACTGGGCAGACGACTGAACAAGTCTTTGTTCCTCTA
AATGAAGCCCATACGGGTATCAACTTTTCAATCGGCACCGAGAAACAAAA
GCTGACTCTCCTCGGGGGTGTGGGTTCACAGTACCTAGTGTATTATACGA
AAAAGTCGTTCAATGTCATTCAACGAAATACTGGACGTATTGTCAAGAAA
TGGCCGAGAATGCCCGAGGCCATGTTAATCAGGGGGGAGACTACGTGTAA
CGCGCCTTTGATTACGGGCGTTGTCACATGCGAAACCGTAGGAGATAGAA
AGCACTATCATATACATCCGCTCGAAGGTGGAGCGGCAGAGTATAGTTTC
AGTATAGATACCGAAGATCAACTTATTGATGTCACACGAAGTCGTGACGG
AAAAACAATAACGAAACGAATTGTAAGTGATGGGGTGGTGAAGCTCTGGA
CAGTCGTTCATCGCAATGCCATTTTTCATTGGCTTCAAGGACTTCGCGTC
AGCAACAAGTCAGGAGAAGTGGAAATGAGATCCAATGGCTCTCAAGTGTT
CATGAGACCCGGGGGAGGTGATGGTCGAATCATAAGGTTTACATACAGCT
CTGTTGTTCGAGTGGATAAGATAGCGAGACGAGTGCAAGGTATGAGTTTC
GATTGGGCAAGGGCCAGTTGGGATGGGAGAATAGTTCTAGCAGTGAGTCG
GAAAGGTGGATTTATTAGCATATTTGACTGCGATGAAGGACGATGTTTGA
AAAGCATTTCCATTGGTGATGAAATTGGCGACTTGGTTCTTGTCGACGGG
CATCTGCTTGTATGCTTCACCGCCAAAAATATTATTGAATGCCATTTCAA
ACGGTTCTGTAAATGTCTCGGAGCCTTTGGAGAACTCTGTCGATCCGAGG
AACAAAAAGCTGGATCGACGGACAAGAGGATGAACGCTGAAGTATTGTAG
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protein sequence of Gchil2848.t1

>Gchil2848.t1 ID=Gchil2848.t1|Name=Gchil2848.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=500bp
MSNPSRRRERSASLPVDAWRQVASHLSTSDLSNLALVSKSCRVAALSPDL
FAKHIYCQPQSDLLSTTGYQAIYRNSKSLRHAPTTSTIHSRQYKRVNLGI
LGSISRYLILYNEREGIVSCLPAGWRRRVSELLLEESDHTDASYGQIPLF
PRQEFVAARFLEMPDCKIGFFCTGGTGCRGQLVTICGRTGQTTEQVFVPL
NEAHTGINFSIGTEKQKLTLLGGVGSQYLVYYTKKSFNVIQRNTGRIVKK
WPRMPEAMLIRGETTCNAPLITGVVTCETVGDRKHYHIHPLEGGAAEYSF
SIDTEDQLIDVTRSRDGKTITKRIVSDGVVKLWTVVHRNAIFHWLQGLRV
SNKSGEVEMRSNGSQVFMRPGGGDGRIIRFTYSSVVRVDKIARRVQGMSF
DWARASWDGRIVLAVSRKGGFISIFDCDEGRCLKSISIGDEIGDLVLVDG
HLLVCFTAKNIIECHFKRFCKCLGAFGELCRSEEQKAGSTDKRMNAEVL*
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mRNA from alignment at tig00004406_pilon:908148..909647+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2848.t1 ID=Gchil2848.t1|Name=Gchil2848.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1500bp|location=Sequence derived from alignment at tig00004406_pilon:908148..909647+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTAATCCAAGTCGAAGGCGAGAGAGATCTGCATCTCTTCCAGTGGA
TGCCTGGCGCCAAGTGGCATCCCATCTTTCCACATCAGACCTCAGCAACT
TAGCGCTGGTTTCCAAGTCATGCAGAGTAGCGGCTTTATCTCCCGACTTG
TTCGCGAAACATATATACTGCCAGCCCCAAAGCGATTTGCTTTCAACCAC
AGGCTATCAAGCCATATACCGCAACTCAAAGTCACTGCGGCATGCTCCGA
CGACGTCTACCATCCATTCCCGTCAATACAAACGCGTCAATCTGGGTATC
CTTGGTTCCATTTCACGCTATCTAATTCTCTACAATGAAAGAGAAGGAAT
TGTTAGCTGCCTCCCAGCTGGTTGGCGTCGTCGTGTTTCAGAACTGCTTT
TGGAAGAATCTGACCACACAGATGCATCATACGGTCAAATCCCATTGTTT
CCGCGACAAGAATTTGTTGCTGCGAGGTTTCTAGAAATGCCGGACTGTAA
AATAGGTTTCTTTTGTACTGGTGGCACTGGTTGTAGGGGTCAACTGGTCA
CAATATGTGGAAGGACTGGGCAGACGACTGAACAAGTCTTTGTTCCTCTA
AATGAAGCCCATACGGGTATCAACTTTTCAATCGGCACCGAGAAACAAAA
GCTGACTCTCCTCGGGGGTGTGGGTTCACAGTACCTAGTGTATTATACGA
AAAAGTCGTTCAATGTCATTCAACGAAATACTGGACGTATTGTCAAGAAA
TGGCCGAGAATGCCCGAGGCCATGTTAATCAGGGGGGAGACTACGTGTAA
CGCGCCTTTGATTACGGGCGTTGTCACATGCGAAACCGTAGGAGATAGAA
AGCACTATCATATACATCCGCTCGAAGGTGGAGCGGCAGAGTATAGTTTC
AGTATAGATACCGAAGATCAACTTATTGATGTCACACGAAGTCGTGACGG
AAAAACAATAACGAAACGAATTGTAAGTGATGGGGTGGTGAAGCTCTGGA
CAGTCGTTCATCGCAATGCCATTTTTCATTGGCTTCAAGGACTTCGCGTC
AGCAACAAGTCAGGAGAAGTGGAAATGAGATCCAATGGCTCTCAAGTGTT
CATGAGACCCGGGGGAGGTGATGGTCGAATCATAAGGTTTACATACAGCT
CTGTTGTTCGAGTGGATAAGATAGCGAGACGAGTGCAAGGTATGAGTTTC
GATTGGGCAAGGGCCAGTTGGGATGGGAGAATAGTTCTAGCAGTGAGTCG
GAAAGGTGGATTTATTAGCATATTTGACTGCGATGAAGGACGATGTTTGA
AAAGCATTTCCATTGGTGATGAAATTGGCGACTTGGTTCTTGTCGACGGG
CATCTGCTTGTATGCTTCACCGCCAAAAATATTATTGAATGCCATTTCAA
ACGGTTCTGTAAATGTCTCGGAGCCTTTGGAGAACTCTGTCGATCCGAGG
AACAAAAAGCTGGATCGACGGACAAGAGGATGAACGCTGAAGTATTGTAG
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Coding sequence (CDS) from alignment at tig00004406_pilon:908148..909647+

>Gchil2848.t1 ID=Gchil2848.t1|Name=Gchil2848.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1500bp|location=Sequence derived from alignment at tig00004406_pilon:908148..909647+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTAATCCAAGTCGAAGGCGAGAGAGATCTGCATCTCTTCCAGTGGA
TGCCTGGCGCCAAGTGGCATCCCATCTTTCCACATCAGACCTCAGCAACT
TAGCGCTGGTTTCCAAGTCATGCAGAGTAGCGGCTTTATCTCCCGACTTG
TTCGCGAAACATATATACTGCCAGCCCCAAAGCGATTTGCTTTCAACCAC
AGGCTATCAAGCCATATACCGCAACTCAAAGTCACTGCGGCATGCTCCGA
CGACGTCTACCATCCATTCCCGTCAATACAAACGCGTCAATCTGGGTATC
CTTGGTTCCATTTCACGCTATCTAATTCTCTACAATGAAAGAGAAGGAAT
TGTTAGCTGCCTCCCAGCTGGTTGGCGTCGTCGTGTTTCAGAACTGCTTT
TGGAAGAATCTGACCACACAGATGCATCATACGGTCAAATCCCATTGTTT
CCGCGACAAGAATTTGTTGCTGCGAGGTTTCTAGAAATGCCGGACTGTAA
AATAGGTTTCTTTTGTACTGGTGGCACTGGTTGTAGGGGTCAACTGGTCA
CAATATGTGGAAGGACTGGGCAGACGACTGAACAAGTCTTTGTTCCTCTA
AATGAAGCCCATACGGGTATCAACTTTTCAATCGGCACCGAGAAACAAAA
GCTGACTCTCCTCGGGGGTGTGGGTTCACAGTACCTAGTGTATTATACGA
AAAAGTCGTTCAATGTCATTCAACGAAATACTGGACGTATTGTCAAGAAA
TGGCCGAGAATGCCCGAGGCCATGTTAATCAGGGGGGAGACTACGTGTAA
CGCGCCTTTGATTACGGGCGTTGTCACATGCGAAACCGTAGGAGATAGAA
AGCACTATCATATACATCCGCTCGAAGGTGGAGCGGCAGAGTATAGTTTC
AGTATAGATACCGAAGATCAACTTATTGATGTCACACGAAGTCGTGACGG
AAAAACAATAACGAAACGAATTGTAAGTGATGGGGTGGTGAAGCTCTGGA
CAGTCGTTCATCGCAATGCCATTTTTCATTGGCTTCAAGGACTTCGCGTC
AGCAACAAGTCAGGAGAAGTGGAAATGAGATCCAATGGCTCTCAAGTGTT
CATGAGACCCGGGGGAGGTGATGGTCGAATCATAAGGTTTACATACAGCT
CTGTTGTTCGAGTGGATAAGATAGCGAGACGAGTGCAAGGTATGAGTTTC
GATTGGGCAAGGGCCAGTTGGGATGGGAGAATAGTTCTAGCAGTGAGTCG
GAAAGGTGGATTTATTAGCATATTTGACTGCGATGAAGGACGATGTTTGA
AAAGCATTTCCATTGGTGATGAAATTGGCGACTTGGTTCTTGTCGACGGG
CATCTGCTTGTATGCTTCACCGCCAAAAATATTATTGAATGCCATTTCAA
ACGGTTCTGTAAATGTCTCGGAGCCTTTGGAGAACTCTGTCGATCCGAGG
AACAAAAAGCTGGATCGACGGACAAGAGGATGAACGCTGAAGTATTGTAG
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