Gchil2848.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil2848.t1
Unique Name	Gchil2848.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	500

Homology

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BLAST of Gchil2848.t1 vs. uniprot
Match: A0A2V3IHG5_9FLOR (F-box domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHG5_9FLOR)

HSP 1 Score: 541 bits (1395), Expect = 5.110e-187
Identity = 276/501 (55.09%), Postives = 345/501 (68.86%), Query Frame = 0

Query:    7 RRERSASLPVDAWRQVASHLSTSDLSNLALVSKSCRVAALSPDLFAKHIYCQPQSDLLSTTGYQAIYRNSKSLRHAPTTSTIHSRQYKRVNLGILGSISRYLILYNEREGIVSCLPAGWRRRVSELL----LEESDHTDASYGQIPL-----FPRQEFVAARFLEMPDCKIGFFCTGGTGCRGQLVTICGRTGQTTEQVFVPLNEAHTGINFSIGTEKQKLTLLGGVGSQYLVYYTKKSFNVIQRNTGRIVKKWPRMPEAMLIRGETTCNAPLITGVVTCETVGDRKHYHIHPLEGGAAEYSFSIDTEDQLIDVTRSRDGKTITKRIVSDGVVKLWTVVHRNAIFHWLQGLRVSNKSGEVEMRSNGSQVFMRPGGGDGRIIRFTYSSVVRVDKIARRVQGMSFDWARASWDGRIVLAVSRKGGFISIFDCDEGRCLKSISIGDEIGDLVLVDGHLLVCFTAKNIIECHFKRFCKCLGAFGELCRSEEQKAGSTDKRMNAEV 498
            R  + ASLP D WR VAS L  SDL NLALVS++CR AALSPDLFAKH+  QP +DLLSTT Y  IYRNS SLR  P  S + S   ++  L ILGS+S+ LI+Y+E  G+VS  P  WRR +SEL+     E +++ + S    P      F RQ FV+ RFLE+P+C+IGF      G R   VT+   TGQT   +F+P N        + G +K +  LLGG  SQY+VY+  +   VI+R+ G +VKKWP   E+ML+RGET+ NAPLITGVV C+   DRK YHIH LEGG+++Y F ID  D LIDV +SRDG TI+KR+ S   VKLWTVVH + IFHW Q L +SN++G +EMRSNGSQ+ +RP GG GRI+R  Y   VRV+++ARRVQ  +FDWARASWDGRIVLAVSR  GF+SIFDCDEGRCLKS+SIGD+I DLVLVDGH+LV  T  +I+ECHFKRFC C G FGE  ++ E  + ++    +AE 
Sbjct:   17 RETKCASLPPDVWRHVASFLPKSDLVNLALVSQTCRAAALSPDLFAKHLSIQPPADLLSTTSYPTIYRNSHSLRLTPLISKVFSPDVRKAKLAILGSVSKLLIMYDENTGMVSTYPNEWRRDISELISKTAAENNENEEMSDSSSPKDESKPFQRQ-FVSERFLELPNCEIGFLSDAKNGIRKTFVTVNAETGQTVRTMFLPTNVGDELGRLAFGMDKPRRILLGGNESQYMVYFVGRMLFVIRRDEGTLVKKWPNAEESMLVRGETSFNAPLITGVVRCDGFEDRKQYHIHTLEGGSSDYHFCIDQHDTLIDVAQSRDGNTISKRVSSAKKVKLWTVVHHDIIFHWYQKLPLSNRTGALEMRSNGSQILIRPEGGGGRIVRINYGLPVRVEQLARRVQSSAFDWARASWDGRIVLAVSRSSGFLSIFDCDEGRCLKSVSIGDQIDDLVLVDGHILVALTPGHIVECHFKRFCGCEGLFGERQQAAENDSTTSPAEASAEA 516

The following BLAST results are available for this feature:

BLAST of Gchil2848.t1 vs. uniprot

BLAST of Gchil2848.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IHG5_9FLOR	5.110e-187	55.09	F-box domain-containing protein n=1 Tax=Gracilario...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 14..54 e-value: 0.0012 score: 28.1
IPR001810	F-box domain	PFAM	PF00646	F-box	coord: 13..49 e-value: 1.0E-5 score: 25.3
None	No IPR available	SUPERFAMILY	63829	Calcium-dependent phosphotriesterase	coord: 297..460
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 12..58

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004406_pilon	contig	tig00004406_pilon:908148..909647 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2848.t1	Gchil2848.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00004406_pilon 908148..909647 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil2848.t1 ID=Gchil2848.t1|Name=Gchil2848.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=500bp
MSNPSRRRERSASLPVDAWRQVASHLSTSDLSNLALVSKSCRVAALSPDL
FAKHIYCQPQSDLLSTTGYQAIYRNSKSLRHAPTTSTIHSRQYKRVNLGI
LGSISRYLILYNEREGIVSCLPAGWRRRVSELLLEESDHTDASYGQIPLF
PRQEFVAARFLEMPDCKIGFFCTGGTGCRGQLVTICGRTGQTTEQVFVPL
NEAHTGINFSIGTEKQKLTLLGGVGSQYLVYYTKKSFNVIQRNTGRIVKK
WPRMPEAMLIRGETTCNAPLITGVVTCETVGDRKHYHIHPLEGGAAEYSF
SIDTEDQLIDVTRSRDGKTITKRIVSDGVVKLWTVVHRNAIFHWLQGLRV
SNKSGEVEMRSNGSQVFMRPGGGDGRIIRFTYSSVVRVDKIARRVQGMSF
DWARASWDGRIVLAVSRKGGFISIFDCDEGRCLKSISIGDEIGDLVLVDG
HLLVCFTAKNIIECHFKRFCKCLGAFGELCRSEEQKAGSTDKRMNAEVL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR001810	F-box_dom
IPR036047	F-box-like_dom_sf