Gchil1652.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1652.t1
Unique Name	Gchil1652.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	339

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:1408548..1409564 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	42068.L0P845
Preferred name	lcl3
PFAMs	SNase
Max annot lvl	4751\|Fungi
GOs	GO:0003674,GO:0003824,GO:0004518,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006401,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0016070,GO:0016787,GO:0016788,GO:0019439,GO:0034641,GO:0034655,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044464,GO:0046483,GO:0046700,GO:0071704,GO:0090304,GO:0090305,GO:1901360,GO:1901361,GO:1901575
Evalue	8.13e-34
EggNOG OGs	COG1525@1\|root,2RZZQ@2759\|Eukaryota,39QVQ@33154\|Opisthokonta,3Q6WA@4751\|Fungi,3RPPQ@4890\|Ascomycota,3MEVZ@451866\|Taphrinomycotina
Description	Staphylococcal nuclease homologues
COG category	C

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1652	Gchil1652	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 1408548..1409564 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1652.t1.start1	Gchil1652.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 1408548..1408550 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1652.t1.CDS1	Gchil1652.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 1408548..1409564 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1652.t1.exon1	Gchil1652.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 1408548..1409564 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1652.t1.stop1	Gchil1652.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 1409562..1409564 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1652.t1	Gchil1652.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 1408548..1409564 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:1408548..1409564+
coding sequence from alignment at tig00004403_pilon:1408548..1409564+

mRNA sequence

>Gchil1652.t1 ID=Gchil1652.t1|Name=Gchil1652.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=339bp
MSSDSPKRPPLDFLSVLGATARAASGRVQKLPQHASVARRKVHKGAISAC
KRLPLNLSDDYIIGAVDVFASLAVLYVTLPAAVRSVRRFPTAAQIPSNLI
NNRSMLHGAVVAVRDGDNLRVRHSPFLYRIFNRYTLPKGTNISQTTINIR
LAGVDAPECASFGNKGQKYGPVARNWLKNYALGRKVAFRVHAIDQYKRVV
ATVYRKPENLILRTLRLGRKNIGLELTRSGYATVYTGAGAQYGSERLLKL
YKKVEQRARVKKVGMWSENNVTTPKQYKEAVRAGGNHLKKLLKKESNKPK
GSEASQNGAATSPRSLESEPIDAMRLFENVYNFLKRFR*

spliced messenger RNA

>Gchil1652.t1 ID=Gchil1652.t1|Name=Gchil1652.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00004403_pilon:1408548..1409564+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCGGACTCACCGAAACGACCTCCTCTCGACTTCCTTAGTGTATT
GGGAGCAACAGCACGAGCAGCTTCGGGAAGGGTGCAAAAACTCCCTCAAC
ATGCATCGGTAGCTCGAAGGAAGGTTCACAAAGGTGCCATCTCCGCTTGT
AAGAGACTACCTCTGAATCTTTCTGACGATTACATCATCGGCGCGGTGGA
CGTTTTCGCTTCCCTAGCAGTTTTGTATGTCACATTGCCCGCTGCTGTGC
GATCTGTTCGACGTTTTCCGACTGCGGCACAAATCCCTTCCAACTTGATA
AACAATCGTAGCATGCTTCATGGAGCGGTTGTTGCAGTACGGGACGGTGA
TAATCTTCGTGTTCGTCACAGTCCTTTTCTGTATCGTATATTTAACCGAT
ACACACTACCAAAAGGTACAAACATTTCTCAAACCACTATCAACATTCGC
CTAGCTGGTGTCGACGCTCCAGAATGTGCAAGTTTTGGAAACAAAGGACA
AAAGTACGGACCTGTAGCACGTAACTGGTTGAAGAACTATGCCTTGGGAC
GCAAGGTGGCATTTCGAGTACATGCCATTGACCAGTATAAGCGCGTAGTG
GCGACAGTCTACCGAAAGCCCGAAAACTTGATCCTCAGAACGCTAAGACT
TGGAAGGAAAAACATCGGGTTGGAACTAACGAGATCGGGCTATGCGACCG
TATATACGGGTGCTGGTGCTCAATATGGAAGTGAGCGACTATTGAAGTTG
TACAAAAAGGTAGAACAGCGTGCAAGAGTCAAAAAAGTTGGGATGTGGAG
TGAAAACAATGTGACTACACCGAAACAGTACAAGGAGGCTGTAAGGGCTG
GAGGAAATCACTTGAAAAAGTTATTGAAGAAGGAATCTAATAAACCTAAA
GGTTCAGAAGCATCTCAAAATGGTGCCGCAACGAGCCCACGCTCGTTGGA
GTCTGAACCCATTGACGCAATGAGATTGTTCGAAAACGTTTACAATTTCC
TCAAACGCTTTCGCTAA

protein sequence of Gchil1652.t1

>Gchil1652.t1 ID=Gchil1652.t1|Name=Gchil1652.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=339bp
MSSDSPKRPPLDFLSVLGATARAASGRVQKLPQHASVARRKVHKGAISAC
KRLPLNLSDDYIIGAVDVFASLAVLYVTLPAAVRSVRRFPTAAQIPSNLI
NNRSMLHGAVVAVRDGDNLRVRHSPFLYRIFNRYTLPKGTNISQTTINIR
LAGVDAPECASFGNKGQKYGPVARNWLKNYALGRKVAFRVHAIDQYKRVV
ATVYRKPENLILRTLRLGRKNIGLELTRSGYATVYTGAGAQYGSERLLKL
YKKVEQRARVKKVGMWSENNVTTPKQYKEAVRAGGNHLKKLLKKESNKPK
GSEASQNGAATSPRSLESEPIDAMRLFENVYNFLKRFR*

mRNA from alignment at tig00004403_pilon:1408548..1409564+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1652.t1 ID=Gchil1652.t1|Name=Gchil1652.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1017bp|location=Sequence derived from alignment at tig00004403_pilon:1408548..1409564+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTCGGACTCACCGAAACGACCTCCTCTCGACTTCCTTAGTGTATT
GGGAGCAACAGCACGAGCAGCTTCGGGAAGGGTGCAAAAACTCCCTCAAC
ATGCATCGGTAGCTCGAAGGAAGGTTCACAAAGGTGCCATCTCCGCTTGT
AAGAGACTACCTCTGAATCTTTCTGACGATTACATCATCGGCGCGGTGGA
CGTTTTCGCTTCCCTAGCAGTTTTGTATGTCACATTGCCCGCTGCTGTGC
GATCTGTTCGACGTTTTCCGACTGCGGCACAAATCCCTTCCAACTTGATA
AACAATCGTAGCATGCTTCATGGAGCGGTTGTTGCAGTACGGGACGGTGA
TAATCTTCGTGTTCGTCACAGTCCTTTTCTGTATCGTATATTTAACCGAT
ACACACTACCAAAAGGTACAAACATTTCTCAAACCACTATCAACATTCGC
CTAGCTGGTGTCGACGCTCCAGAATGTGCAAGTTTTGGAAACAAAGGACA
AAAGTACGGACCTGTAGCACGTAACTGGTTGAAGAACTATGCCTTGGGAC
GCAAGGTGGCATTTCGAGTACATGCCATTGACCAGTATAAGCGCGTAGTG
GCGACAGTCTACCGAAAGCCCGAAAACTTGATCCTCAGAACGCTAAGACT
TGGAAGGAAAAACATCGGGTTGGAACTAACGAGATCGGGCTATGCGACCG
TATATACGGGTGCTGGTGCTCAATATGGAAGTGAGCGACTATTGAAGTTG
TACAAAAAGGTAGAACAGCGTGCAAGAGTCAAAAAAGTTGGGATGTGGAG
TGAAAACAATGTGACTACACCGAAACAGTACAAGGAGGCTGTAAGGGCTG
GAGGAAATCACTTGAAAAAGTTATTGAAGAAGGAATCTAATAAACCTAAA
GGTTCAGAAGCATCTCAAAATGGTGCCGCAACGAGCCCACGCTCGTTGGA
GTCTGAACCCATTGACGCAATGAGATTGTTCGAAAACGTTTACAATTTCC
TCAAACGCTTTCGCTAA

Coding sequence (CDS) from alignment at tig00004403_pilon:1408548..1409564+

>Gchil1652.t1 ID=Gchil1652.t1|Name=Gchil1652.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1017bp|location=Sequence derived from alignment at tig00004403_pilon:1408548..1409564+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTCGGACTCACCGAAACGACCTCCTCTCGACTTCCTTAGTGTATT
GGGAGCAACAGCACGAGCAGCTTCGGGAAGGGTGCAAAAACTCCCTCAAC
ATGCATCGGTAGCTCGAAGGAAGGTTCACAAAGGTGCCATCTCCGCTTGT
AAGAGACTACCTCTGAATCTTTCTGACGATTACATCATCGGCGCGGTGGA
CGTTTTCGCTTCCCTAGCAGTTTTGTATGTCACATTGCCCGCTGCTGTGC
GATCTGTTCGACGTTTTCCGACTGCGGCACAAATCCCTTCCAACTTGATA
AACAATCGTAGCATGCTTCATGGAGCGGTTGTTGCAGTACGGGACGGTGA
TAATCTTCGTGTTCGTCACAGTCCTTTTCTGTATCGTATATTTAACCGAT
ACACACTACCAAAAGGTACAAACATTTCTCAAACCACTATCAACATTCGC
CTAGCTGGTGTCGACGCTCCAGAATGTGCAAGTTTTGGAAACAAAGGACA
AAAGTACGGACCTGTAGCACGTAACTGGTTGAAGAACTATGCCTTGGGAC
GCAAGGTGGCATTTCGAGTACATGCCATTGACCAGTATAAGCGCGTAGTG
GCGACAGTCTACCGAAAGCCCGAAAACTTGATCCTCAGAACGCTAAGACT
TGGAAGGAAAAACATCGGGTTGGAACTAACGAGATCGGGCTATGCGACCG
TATATACGGGTGCTGGTGCTCAATATGGAAGTGAGCGACTATTGAAGTTG
TACAAAAAGGTAGAACAGCGTGCAAGAGTCAAAAAAGTTGGGATGTGGAG
TGAAAACAATGTGACTACACCGAAACAGTACAAGGAGGCTGTAAGGGCTG
GAGGAAATCACTTGAAAAAGTTATTGAAGAAGGAATCTAATAAACCTAAA
GGTTCAGAAGCATCTCAAAATGGTGCCGCAACGAGCCCACGCTCGTTGGA
GTCTGAACCCATTGACGCAATGAGATTGTTCGAAAACGTTTACAATTTCC
TCAAACGCTTTCGCTAA