Gchil1584.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1584.t1
Unique NameGchil1584.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length360
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1070007..1071086 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog115417.EPrPW00000022363
PFAMsC2,Copine
Max annot lvl121069|Pythiales
Evalue1.83e-07
EggNOG OGsKOG1327@1|root,KOG1327@2759|Eukaryota,1MF6I@121069|Pythiales
DescriptionCopine. Source PGD
COG categoryT
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1584Gchil1584Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1070007..1071086 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1584.t1.stop1Gchil1584.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1070007..1070009 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1584.t1.CDS1Gchil1584.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1070007..1071086 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1584.t1.exon1Gchil1584.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1070007..1071086 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1584.t1.start1Gchil1584.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1071084..1071086 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1584.t1Gchil1584.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1070007..1071086 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1584.t1 ID=Gchil1584.t1|Name=Gchil1584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=360bp
MKLIELFLSASISAKHSDTEAPTFAVVLRRDAFGTEFEELGRTETIAQSD
PLLFFTSFTVSYNERLADETVLRFELYERKTDDTEKLREHDHLAKATLSL
PDLILAPGNHLTTQLSHPTIEEKVGVLTISAEEVDASNQENQSDVLFDLS
SNVLRKKDWNKTLLHQRYELKRAHKHEDTEGHTVWLPIHKSDRIGKQRYS
NTIIEFSTTNLKYRHLCNGDDERRLKISLYVNSPTIKRTTTESLLGSVQF
CLRDICELDPTQEVLPLEGGGDGDEDVGHVSILKAEPTDYGSHFALRVNF
EHQKYSTGGSQEKRKLVNMTKKRLSMSKLSIGRGKSSQNGPKLPALNSIE
NLFKQQPTR*
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spliced messenger RNA

>Gchil1584.t1 ID=Gchil1584.t1|Name=Gchil1584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at tig00004403_pilon:1070007..1071086- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTTATCGAGCTTTTCCTCTCTGCTTCCATCAGTGCCAAGCACTC
TGACACCGAAGCCCCAACGTTTGCCGTTGTTCTCCGCAGGGATGCCTTCG
GTACCGAATTCGAAGAATTAGGCAGGACGGAGACCATAGCGCAGTCGGAC
CCTCTGCTGTTTTTCACATCGTTTACGGTGTCATACAACGAAAGGCTGGC
CGATGAAACAGTGCTCAGATTCGAGCTGTACGAGAGAAAAACCGATGACA
CCGAGAAGCTTCGCGAGCACGACCACTTGGCAAAGGCTACCCTATCTTTG
CCTGACCTCATCTTGGCGCCTGGCAATCACCTTACCACCCAGCTTTCACA
CCCTACTATCGAGGAAAAGGTTGGCGTGCTCACCATAAGTGCAGAGGAAG
TCGATGCGAGCAACCAGGAAAATCAGTCAGACGTGCTTTTTGATCTTTCC
TCGAATGTTTTGAGAAAAAAAGACTGGAATAAGACACTGCTTCACCAGCG
ATATGAGCTGAAGAGAGCCCATAAACATGAAGATACCGAAGGCCACACCG
TTTGGCTGCCCATTCACAAGAGTGACCGTATTGGAAAGCAAAGGTATTCG
AACACCATCATTGAGTTCTCAACGACCAACCTCAAATACCGCCATTTGTG
TAACGGTGACGACGAAAGGAGGTTGAAGATCTCCTTGTACGTCAATTCAC
CCACAATCAAACGCACTACCACCGAGTCACTCCTGGGATCAGTACAGTTT
TGCCTTCGTGACATTTGTGAACTTGATCCGACGCAAGAGGTCCTGCCCCT
CGAAGGAGGTGGAGATGGAGATGAAGACGTCGGACATGTTTCCATCCTCA
AAGCGGAGCCTACAGATTATGGGAGTCACTTTGCCTTACGTGTGAATTTC
GAACACCAAAAGTATTCTACAGGAGGATCACAAGAGAAGCGAAAACTCGT
CAACATGACAAAGAAGAGACTGTCCATGTCGAAATTATCCATTGGTCGAG
GCAAGTCTAGTCAGAACGGTCCGAAACTTCCTGCTCTCAATTCCATAGAG
AATCTGTTTAAACAACAGCCTACACGGTGA
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protein sequence of Gchil1584.t1

>Gchil1584.t1 ID=Gchil1584.t1|Name=Gchil1584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=360bp
MKLIELFLSASISAKHSDTEAPTFAVVLRRDAFGTEFEELGRTETIAQSD
PLLFFTSFTVSYNERLADETVLRFELYERKTDDTEKLREHDHLAKATLSL
PDLILAPGNHLTTQLSHPTIEEKVGVLTISAEEVDASNQENQSDVLFDLS
SNVLRKKDWNKTLLHQRYELKRAHKHEDTEGHTVWLPIHKSDRIGKQRYS
NTIIEFSTTNLKYRHLCNGDDERRLKISLYVNSPTIKRTTTESLLGSVQF
CLRDICELDPTQEVLPLEGGGDGDEDVGHVSILKAEPTDYGSHFALRVNF
EHQKYSTGGSQEKRKLVNMTKKRLSMSKLSIGRGKSSQNGPKLPALNSIE
NLFKQQPTR*
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mRNA from alignment at tig00004403_pilon:1070007..1071086-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1584.t1 ID=Gchil1584.t1|Name=Gchil1584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1080bp|location=Sequence derived from alignment at tig00004403_pilon:1070007..1071086- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCTTATCGAGCTTTTCCTCTCTGCTTCCATCAGTGCCAAGCACTC
TGACACCGAAGCCCCAACGTTTGCCGTTGTTCTCCGCAGGGATGCCTTCG
GTACCGAATTCGAAGAATTAGGCAGGACGGAGACCATAGCGCAGTCGGAC
CCTCTGCTGTTTTTCACATCGTTTACGGTGTCATACAACGAAAGGCTGGC
CGATGAAACAGTGCTCAGATTCGAGCTGTACGAGAGAAAAACCGATGACA
CCGAGAAGCTTCGCGAGCACGACCACTTGGCAAAGGCTACCCTATCTTTG
CCTGACCTCATCTTGGCGCCTGGCAATCACCTTACCACCCAGCTTTCACA
CCCTACTATCGAGGAAAAGGTTGGCGTGCTCACCATAAGTGCAGAGGAAG
TCGATGCGAGCAACCAGGAAAATCAGTCAGACGTGCTTTTTGATCTTTCC
TCGAATGTTTTGAGAAAAAAAGACTGGAATAAGACACTGCTTCACCAGCG
ATATGAGCTGAAGAGAGCCCATAAACATGAAGATACCGAAGGCCACACCG
TTTGGCTGCCCATTCACAAGAGTGACCGTATTGGAAAGCAAAGGTATTCG
AACACCATCATTGAGTTCTCAACGACCAACCTCAAATACCGCCATTTGTG
TAACGGTGACGACGAAAGGAGGTTGAAGATCTCCTTGTACGTCAATTCAC
CCACAATCAAACGCACTACCACCGAGTCACTCCTGGGATCAGTACAGTTT
TGCCTTCGTGACATTTGTGAACTTGATCCGACGCAAGAGGTCCTGCCCCT
CGAAGGAGGTGGAGATGGAGATGAAGACGTCGGACATGTTTCCATCCTCA
AAGCGGAGCCTACAGATTATGGGAGTCACTTTGCCTTACGTGTGAATTTC
GAACACCAAAAGTATTCTACAGGAGGATCACAAGAGAAGCGAAAACTCGT
CAACATGACAAAGAAGAGACTGTCCATGTCGAAATTATCCATTGGTCGAG
GCAAGTCTAGTCAGAACGGTCCGAAACTTCCTGCTCTCAATTCCATAGAG
AATCTGTTTAAACAACAGCCTACACGGTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:1070007..1071086-

>Gchil1584.t1 ID=Gchil1584.t1|Name=Gchil1584.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1080bp|location=Sequence derived from alignment at tig00004403_pilon:1070007..1071086- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCTTATCGAGCTTTTCCTCTCTGCTTCCATCAGTGCCAAGCACTC
TGACACCGAAGCCCCAACGTTTGCCGTTGTTCTCCGCAGGGATGCCTTCG
GTACCGAATTCGAAGAATTAGGCAGGACGGAGACCATAGCGCAGTCGGAC
CCTCTGCTGTTTTTCACATCGTTTACGGTGTCATACAACGAAAGGCTGGC
CGATGAAACAGTGCTCAGATTCGAGCTGTACGAGAGAAAAACCGATGACA
CCGAGAAGCTTCGCGAGCACGACCACTTGGCAAAGGCTACCCTATCTTTG
CCTGACCTCATCTTGGCGCCTGGCAATCACCTTACCACCCAGCTTTCACA
CCCTACTATCGAGGAAAAGGTTGGCGTGCTCACCATAAGTGCAGAGGAAG
TCGATGCGAGCAACCAGGAAAATCAGTCAGACGTGCTTTTTGATCTTTCC
TCGAATGTTTTGAGAAAAAAAGACTGGAATAAGACACTGCTTCACCAGCG
ATATGAGCTGAAGAGAGCCCATAAACATGAAGATACCGAAGGCCACACCG
TTTGGCTGCCCATTCACAAGAGTGACCGTATTGGAAAGCAAAGGTATTCG
AACACCATCATTGAGTTCTCAACGACCAACCTCAAATACCGCCATTTGTG
TAACGGTGACGACGAAAGGAGGTTGAAGATCTCCTTGTACGTCAATTCAC
CCACAATCAAACGCACTACCACCGAGTCACTCCTGGGATCAGTACAGTTT
TGCCTTCGTGACATTTGTGAACTTGATCCGACGCAAGAGGTCCTGCCCCT
CGAAGGAGGTGGAGATGGAGATGAAGACGTCGGACATGTTTCCATCCTCA
AAGCGGAGCCTACAGATTATGGGAGTCACTTTGCCTTACGTGTGAATTTC
GAACACCAAAAGTATTCTACAGGAGGATCACAAGAGAAGCGAAAACTCGT
CAACATGACAAAGAAGAGACTGTCCATGTCGAAATTATCCATTGGTCGAG
GCAAGTCTAGTCAGAACGGTCCGAAACTTCCTGCTCTCAATTCCATAGAG
AATCTGTTTAAACAACAGCCTACACGGTGA
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