Gchil1679.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil1679.t1
Unique NameGchil1679.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length438
Homology
BLAST of Gchil1679.t1 vs. uniprot
Match: A0A2V3J5X2_9FLOR (Mediator of RNA polymerase II transcription subunit 13 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J5X2_9FLOR)

HSP 1 Score: 672 bits (1734), Expect = 8.540e-225
Identity = 332/437 (75.97%), Postives = 373/437 (85.35%), Query Frame = 0
Query:    1 MKAVSFAVFNSIRTKRVRIPSIDSEVASVLSRASLMPDDLMSPMTPDIVTESPGAASIPPVSPLGCGPEEGVAHATQVPPQNLHVGQVDQSCALSPSFLYEPAVVLAGVGKHMGQTDSRADLVLHLAYTLCDATSRFVFAWTDQRGELLDIATVPVVRAAMTSSRRKAFWGMWARGQRWRISYVDEVHVTVSRAGQMTTGELEDWDWVIGKVMSSKSSLSEKSSDEDNGVSVVRRFPPLQPQKPEEVNDLYTEFSTPATPGVPQPTTCGTASKGTHSIDVKMPPVGSVSVVSVCNLEKHLFLEEALELHGDRRDFAIVGRERLSKGKNVQATAVLVRYENDEMQALEVNVLRHYGSAAHNEDMSDHRSPWDSADVQTIARTIVSNFHDLRYTTSPPCWPVPRWLSMHPVHIDAIRGYQANLRLLHRYGFGAQAVGSR 437
            +KA+SFAVFNSIRTKRVRIPS D EVA+VLSRASLMPDDLMSPMTPD+VTESPG ASI PVSPLG   EEG AH+  + P +LHVG VDQSCALSPSFL+EPAVVLAGVGKHMGQTDSRAD+VLHLAYT C+A+SRFVFAWTDQRGELLD+ATVP++R AMTSSRRKAFWGMWARGQRWRI YVDEVH TVSR G + +GEL DW+WV+ KVMSSKSSLSEK +DED  V VVRRFPP Q  KPEEVND+YTE STPATPGV Q T+    SK   S+DVKMPPV SVS++S+CNLE HLFLEE+ + + DRRDFAIVGRERLS+GKNVQA+AVL RYE D ++ALEVN+LRHYGSA H+E+MSD RSPWDS DVQ+IA  I+SNFHDLRYT S P WP  RWLSM+PVHIDA+RGYQ+ LRL+H  G G  AVG R
Sbjct: 1243 LKAISFAVFNSIRTKRVRIPSTDGEVANVLSRASLMPDDLMSPMTPDMVTESPGGASITPVSPLGNMTEEGGAHSGHIVPSSLHVGHVDQSCALSPSFLHEPAVVLAGVGKHMGQTDSRADIVLHLAYTFCEASSRFVFAWTDQRGELLDVATVPIIRTAMTSSRRKAFWGMWARGQRWRIPYVDEVHATVSRLGPLASGELSDWEWVMSKVMSSKSSLSEKIADEDISVPVVRRFPPPQQAKPEEVNDVYTEISTPATPGVAQTTSSAPGSKSAPSMDVKMPPVCSVSILSICNLETHLFLEESWDPNADRRDFAIVGRERLSRGKNVQASAVLARYEEDGIKALEVNILRHYGSAGHSEEMSDVRSPWDSLDVQSIANKIISNFHDLRYTGSSPSWPAQRWLSMYPVHIDAVRGYQSYLRLIHSNGSGFPAVGLR 1679          
BLAST of Gchil1679.t1 vs. uniprot
Match: R7QCF5_CHOCR (MID_MedPIWI domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCF5_CHOCR)

HSP 1 Score: 453 bits (1166), Expect = 8.000e-142
Identity = 223/439 (50.80%), Postives = 303/439 (69.02%), Query Frame = 0
Query:    1 MKAVSFAVFNSIRTKRVRIPSIDSEVASVLSRASLMPDDLMSPMTPDIVTESPGAASIPPVSPLGCGPEEGVAHATQVPPQN---LHVGQVDQSCALSPSFLYEPAVVLAGVGKHMGQTDSRADLVLHLAYTLCDATSRFVFAWTDQRGELLDIATVPVVRAAMTSSRRKAFWGMWARGQRWRISYVDEVHVTVSRAGQMTTGELEDWDWVIGKVMSSKSSLSEKSSDEDNGVSVVRRFPPLQPQ-KPEEVNDLYTEFSTPATPGVPQPTTCGTASKGTHSIDVKMPPVGSVSVVSVCNLEKHLFLEEALELHGDRRDFAIVGRERLSKGKNVQATAVLVRYENDEMQALEVNVLRHYGSAAHNEDMSDHRSPWDSADVQTIARTIVSNFHDLRYTTSPPCWPVPRWLSMHPVHIDAIRGYQANLRLLHRYGFGAQAVG 435
            MKAVSFAVF+SIR+KRVR   ID +VA V++R +LMPDDLMSPMTPDIV ESPGA    PVSP G   EE V      PP N   L    +DQS ALSPSFL+EPA+VL+GVGKH+GQ D+RAD+VLHLAY+ C+++SR+VF WT QRGE+LDIATVP+ + A+ +SRRKAFW MW RGQRW+I YV ++H TV++ G +  GE++DW+WV+ KVM +K++ ++K S++     V+RRFPPL  Q + E++ DLY++  TPATPG       G  SK + S++ KMP + SVS+++VC  ++   L    +   ++  F +V  +  S  +   A+AVL R+E  ++ A+++NV RHYG     EDM D RSPWD+A V+TIA  I SNFHDLRY  +PP WP   W+S +P+H+D +R +Q  +  +H   FG   +G
Sbjct: 1296 MKAVSFAVFSSIRSKRVRTSLIDGDVAGVIARTALMPDDLMSPMTPDIVAESPGAPPAAPVSPKGTLTEENVGS----PPTNSAALPHAFIDQSVALSPSFLHEPAIVLSGVGKHLGQVDARADIVLHLAYSFCESSSRYVFVWTSQRGEMLDIATVPISKFAVAASRRKAFWCMWVRGQRWKIPYVKDIHATVTKLGPLVEGEVDDWEWVLAKVMRAKAASADKHSEDQPDEKVIRRFPPLVDQPRGEDIADLYSDHPTPATPGNLHHANPGATSKPSISLETKMPGISSVSILNVCEADEQFLLAPGEKSDTNQCGFVLVSLDSTSGRRKPLASAVLARFEEKDITAIQLNVFRHYGKERQGEDMVDDRSPWDAAAVETIASNIASNFHDLRYVGAPPSWPQSHWMSSYPIHLDVVRRFQRQVEFVHASAFGPDILG 1730          
BLAST of Gchil1679.t1 vs. uniprot
Match: A0A7S2ZQM2_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZQM2_9RHOD)

HSP 1 Score: 148 bits (374), Expect = 6.380e-35
Identity = 125/433 (28.87%), Postives = 187/433 (43.19%), Query Frame = 0
Query:    1 MKAVSFAVFNSIRTKRVRIPSIDSEVASVLSRASLMPDDLMSPMTPDIVTESPGAASIPPVSPLGCGPEEGVAHATQVPPQNL-HVGQVDQSCALSPSFLYEPAVVLAGVGKHMGQTDSR-ADLVLHLAYTLCDATSRFVFAWTDQRGELLDIATVPVVRAAMTSSRRKAFWGMWARGQRWRISYVDEVHVTVSRAGQMTTGELEDWDWVIGKVMSSKSSLSEKSSDEDNGVSVVRRFPPLQPQKPE-EVNDLYTEFSTPATPGVPQPTTCGTASKGTHSIDVKMPPVGSVSVVSVCNLEKHLFL-------EEALELHGDRRDFAIVGRERLSKGKNVQATAVLVRYE------NDEMQALEVNVLRHYGSAAHNEDMSDHRSPWDSADVQTIARTIVSNFHDLRYTTSPPCWPVPRWLSMHPVHIDAIRGY 417
            +K+ +F+V+N +R+K V     D               +  SP+TP+    S  A ++P     G G     A     PP NL  +       A S SFLYEPA+ L GVGK    T+    D++LHL Y  C    R+ +AWTD RGE LD+A++          RR  F  M  RGQRW + YV  + V +S+ G + + E EDWD+V+ K++ + +  SE          + RRFPP   Q  E E     T+ + P                G +    +   V     VS+  L++  +        EE  +    +RD  +   E    G   +A A ++R        +     L V +  H+G      D+ D R   D AD + +   +  N +DL    SPPCWP+  W    P+H+ A+R +
Sbjct:  834 IKSYAFSVYNMLRSKTVSAKD-DGPRHQTSKSIGYDQIEFWSPVTPEYAGMSL-AGNLPTAKHNGTG---NSAVEEWSPPANLASLASTAVQEASSVSFLYEPAMTLTGVGKQSEGTEGNPGDMLLHLCYKYCPEAQRYSYAWTDSRGEFLDVASLSCAADTGRQMRRVYFSLMLGRGQRWHLPYVRGLGVVISKVGPLQSSECEDWDFVVRKLLEATTEESE--------TLLCRRFPPEVKQMNEAEGFGNSTKENRPVL--------------GFYPDKFQQDFVQVFRSVSLLELDEDQYFRTLPLPSEETSQSATRQRDLLVAIPESGCGGS--EAAAYILRSPRTLADTDSRSGVLRVRLYTHFGIP----DL-DKRPEVDGADARAVTMYLAKNLYDLCAVGSPPCWPLDAWQPRWPIHVQAVRSH 1232          
The following BLAST results are available for this feature:
BLAST of Gchil1679.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J5X2_9FLOR8.540e-22575.97Mediator of RNA polymerase II transcription subuni... [more]
R7QCF5_CHOCR8.000e-14250.80MID_MedPIWI domain-containing protein n=1 Tax=Chon... [more]
A0A7S2ZQM2_9RHOD6.380e-3528.87Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009401Mediator complex subunit Med13, C-terminalPFAMPF06333Med13_Ccoord: 120..413
e-value: 1.4E-10
score: 41.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1574316..1575629 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1679.t1Gchil1679.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004403_pilon 1574316..1575629 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil1679.t1 ID=Gchil1679.t1|Name=Gchil1679.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=438bp
MKAVSFAVFNSIRTKRVRIPSIDSEVASVLSRASLMPDDLMSPMTPDIVT
ESPGAASIPPVSPLGCGPEEGVAHATQVPPQNLHVGQVDQSCALSPSFLY
EPAVVLAGVGKHMGQTDSRADLVLHLAYTLCDATSRFVFAWTDQRGELLD
IATVPVVRAAMTSSRRKAFWGMWARGQRWRISYVDEVHVTVSRAGQMTTG
ELEDWDWVIGKVMSSKSSLSEKSSDEDNGVSVVRRFPPLQPQKPEEVNDL
YTEFSTPATPGVPQPTTCGTASKGTHSIDVKMPPVGSVSVVSVCNLEKHL
FLEEALELHGDRRDFAIVGRERLSKGKNVQATAVLVRYENDEMQALEVNV
LRHYGSAAHNEDMSDHRSPWDSADVQTIARTIVSNFHDLRYTTSPPCWPV
PRWLSMHPVHIDAIRGYQANLRLLHRYGFGAQAVGSR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009401Med13_C