Gchil1679.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1679.t1
Unique NameGchil1679.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length438
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1574316..1575629 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1679Gchil1679Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1574316..1575629 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1679.t1.start1Gchil1679.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1574316..1574318 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1679.t1.CDS1Gchil1679.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1574316..1575629 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1679.t1.exon1Gchil1679.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1574316..1575629 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1679.t1.stop1Gchil1679.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1575627..1575629 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1679.t1Gchil1679.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1574316..1575629 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1679.t1 ID=Gchil1679.t1|Name=Gchil1679.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=438bp
MKAVSFAVFNSIRTKRVRIPSIDSEVASVLSRASLMPDDLMSPMTPDIVT
ESPGAASIPPVSPLGCGPEEGVAHATQVPPQNLHVGQVDQSCALSPSFLY
EPAVVLAGVGKHMGQTDSRADLVLHLAYTLCDATSRFVFAWTDQRGELLD
IATVPVVRAAMTSSRRKAFWGMWARGQRWRISYVDEVHVTVSRAGQMTTG
ELEDWDWVIGKVMSSKSSLSEKSSDEDNGVSVVRRFPPLQPQKPEEVNDL
YTEFSTPATPGVPQPTTCGTASKGTHSIDVKMPPVGSVSVVSVCNLEKHL
FLEEALELHGDRRDFAIVGRERLSKGKNVQATAVLVRYENDEMQALEVNV
LRHYGSAAHNEDMSDHRSPWDSADVQTIARTIVSNFHDLRYTTSPPCWPV
PRWLSMHPVHIDAIRGYQANLRLLHRYGFGAQAVGSR*
back to top

spliced messenger RNA

>Gchil1679.t1 ID=Gchil1679.t1|Name=Gchil1679.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1314bp|location=Sequence derived from alignment at tig00004403_pilon:1574316..1575629+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGGCAGTGTCATTTGCCGTCTTCAACTCTATTCGCACGAAGAGAGT
AAGGATACCGAGCATTGATAGCGAGGTTGCGAGCGTGCTGTCTCGGGCTT
CGCTCATGCCGGACGATCTCATGTCGCCGATGACACCGGATATTGTGACT
GAGTCCCCTGGAGCTGCTTCAATACCTCCTGTGTCACCATTGGGATGTGG
CCCCGAAGAAGGTGTTGCGCATGCCACTCAAGTGCCTCCTCAAAACTTAC
ATGTCGGGCAAGTTGATCAGAGCTGCGCCCTTTCCCCTTCATTTCTCTAT
GAGCCTGCTGTTGTGCTTGCAGGAGTTGGAAAGCACATGGGACAAACCGA
CTCACGTGCTGATCTCGTGCTGCATTTGGCATACACGTTGTGCGATGCAA
CGTCCAGGTTTGTATTCGCATGGACGGATCAACGGGGGGAACTGTTGGAT
ATCGCAACAGTACCAGTAGTCCGAGCTGCGATGACGTCTTCGAGACGAAA
GGCGTTCTGGGGCATGTGGGCACGAGGACAAAGATGGAGAATATCGTACG
TCGACGAAGTCCATGTGACTGTGTCTCGGGCTGGCCAAATGACCACAGGC
GAACTGGAGGACTGGGATTGGGTGATTGGAAAAGTGATGTCTTCGAAATC
AAGCTTGTCTGAGAAAAGCTCTGACGAAGATAATGGTGTATCCGTCGTGA
GAAGATTCCCACCACTGCAGCCACAAAAACCTGAAGAGGTGAATGACTTG
TACACAGAATTTTCGACGCCCGCGACCCCTGGTGTACCGCAACCAACTAC
TTGCGGAACTGCTTCAAAAGGGACTCATTCTATCGACGTGAAAATGCCTC
CCGTAGGTTCAGTATCCGTTGTAAGCGTCTGCAACTTGGAGAAGCATTTG
TTCTTGGAGGAGGCTTTGGAGCTCCATGGGGACAGGCGAGACTTTGCTAT
CGTGGGAAGGGAGCGCCTGTCCAAAGGGAAGAATGTGCAAGCAACTGCTG
TGCTAGTTCGATACGAGAATGATGAAATGCAGGCACTTGAGGTCAACGTG
TTGCGGCATTACGGAAGTGCCGCGCACAATGAAGACATGTCGGACCATAG
ATCGCCGTGGGATTCGGCTGATGTACAAACTATTGCCCGTACAATCGTTT
CGAACTTTCATGACTTGCGATACACCACCTCACCTCCATGTTGGCCGGTG
CCAAGATGGCTTAGTATGCACCCTGTCCACATAGATGCAATTCGTGGCTA
TCAAGCGAATTTAAGACTCTTGCACCGGTACGGATTTGGCGCACAAGCTG
TAGGTTCGCGGTAG
back to top

protein sequence of Gchil1679.t1

>Gchil1679.t1 ID=Gchil1679.t1|Name=Gchil1679.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=438bp
MKAVSFAVFNSIRTKRVRIPSIDSEVASVLSRASLMPDDLMSPMTPDIVT
ESPGAASIPPVSPLGCGPEEGVAHATQVPPQNLHVGQVDQSCALSPSFLY
EPAVVLAGVGKHMGQTDSRADLVLHLAYTLCDATSRFVFAWTDQRGELLD
IATVPVVRAAMTSSRRKAFWGMWARGQRWRISYVDEVHVTVSRAGQMTTG
ELEDWDWVIGKVMSSKSSLSEKSSDEDNGVSVVRRFPPLQPQKPEEVNDL
YTEFSTPATPGVPQPTTCGTASKGTHSIDVKMPPVGSVSVVSVCNLEKHL
FLEEALELHGDRRDFAIVGRERLSKGKNVQATAVLVRYENDEMQALEVNV
LRHYGSAAHNEDMSDHRSPWDSADVQTIARTIVSNFHDLRYTTSPPCWPV
PRWLSMHPVHIDAIRGYQANLRLLHRYGFGAQAVGSR*
back to top

mRNA from alignment at tig00004403_pilon:1574316..1575629+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1679.t1 ID=Gchil1679.t1|Name=Gchil1679.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1314bp|location=Sequence derived from alignment at tig00004403_pilon:1574316..1575629+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGGCAGTGTCATTTGCCGTCTTCAACTCTATTCGCACGAAGAGAGT
AAGGATACCGAGCATTGATAGCGAGGTTGCGAGCGTGCTGTCTCGGGCTT
CGCTCATGCCGGACGATCTCATGTCGCCGATGACACCGGATATTGTGACT
GAGTCCCCTGGAGCTGCTTCAATACCTCCTGTGTCACCATTGGGATGTGG
CCCCGAAGAAGGTGTTGCGCATGCCACTCAAGTGCCTCCTCAAAACTTAC
ATGTCGGGCAAGTTGATCAGAGCTGCGCCCTTTCCCCTTCATTTCTCTAT
GAGCCTGCTGTTGTGCTTGCAGGAGTTGGAAAGCACATGGGACAAACCGA
CTCACGTGCTGATCTCGTGCTGCATTTGGCATACACGTTGTGCGATGCAA
CGTCCAGGTTTGTATTCGCATGGACGGATCAACGGGGGGAACTGTTGGAT
ATCGCAACAGTACCAGTAGTCCGAGCTGCGATGACGTCTTCGAGACGAAA
GGCGTTCTGGGGCATGTGGGCACGAGGACAAAGATGGAGAATATCGTACG
TCGACGAAGTCCATGTGACTGTGTCTCGGGCTGGCCAAATGACCACAGGC
GAACTGGAGGACTGGGATTGGGTGATTGGAAAAGTGATGTCTTCGAAATC
AAGCTTGTCTGAGAAAAGCTCTGACGAAGATAATGGTGTATCCGTCGTGA
GAAGATTCCCACCACTGCAGCCACAAAAACCTGAAGAGGTGAATGACTTG
TACACAGAATTTTCGACGCCCGCGACCCCTGGTGTACCGCAACCAACTAC
TTGCGGAACTGCTTCAAAAGGGACTCATTCTATCGACGTGAAAATGCCTC
CCGTAGGTTCAGTATCCGTTGTAAGCGTCTGCAACTTGGAGAAGCATTTG
TTCTTGGAGGAGGCTTTGGAGCTCCATGGGGACAGGCGAGACTTTGCTAT
CGTGGGAAGGGAGCGCCTGTCCAAAGGGAAGAATGTGCAAGCAACTGCTG
TGCTAGTTCGATACGAGAATGATGAAATGCAGGCACTTGAGGTCAACGTG
TTGCGGCATTACGGAAGTGCCGCGCACAATGAAGACATGTCGGACCATAG
ATCGCCGTGGGATTCGGCTGATGTACAAACTATTGCCCGTACAATCGTTT
CGAACTTTCATGACTTGCGATACACCACCTCACCTCCATGTTGGCCGGTG
CCAAGATGGCTTAGTATGCACCCTGTCCACATAGATGCAATTCGTGGCTA
TCAAGCGAATTTAAGACTCTTGCACCGGTACGGATTTGGCGCACAAGCTG
TAGGTTCGCGGTAG
back to top

Coding sequence (CDS) from alignment at tig00004403_pilon:1574316..1575629+

>Gchil1679.t1 ID=Gchil1679.t1|Name=Gchil1679.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1314bp|location=Sequence derived from alignment at tig00004403_pilon:1574316..1575629+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGGCAGTGTCATTTGCCGTCTTCAACTCTATTCGCACGAAGAGAGT
AAGGATACCGAGCATTGATAGCGAGGTTGCGAGCGTGCTGTCTCGGGCTT
CGCTCATGCCGGACGATCTCATGTCGCCGATGACACCGGATATTGTGACT
GAGTCCCCTGGAGCTGCTTCAATACCTCCTGTGTCACCATTGGGATGTGG
CCCCGAAGAAGGTGTTGCGCATGCCACTCAAGTGCCTCCTCAAAACTTAC
ATGTCGGGCAAGTTGATCAGAGCTGCGCCCTTTCCCCTTCATTTCTCTAT
GAGCCTGCTGTTGTGCTTGCAGGAGTTGGAAAGCACATGGGACAAACCGA
CTCACGTGCTGATCTCGTGCTGCATTTGGCATACACGTTGTGCGATGCAA
CGTCCAGGTTTGTATTCGCATGGACGGATCAACGGGGGGAACTGTTGGAT
ATCGCAACAGTACCAGTAGTCCGAGCTGCGATGACGTCTTCGAGACGAAA
GGCGTTCTGGGGCATGTGGGCACGAGGACAAAGATGGAGAATATCGTACG
TCGACGAAGTCCATGTGACTGTGTCTCGGGCTGGCCAAATGACCACAGGC
GAACTGGAGGACTGGGATTGGGTGATTGGAAAAGTGATGTCTTCGAAATC
AAGCTTGTCTGAGAAAAGCTCTGACGAAGATAATGGTGTATCCGTCGTGA
GAAGATTCCCACCACTGCAGCCACAAAAACCTGAAGAGGTGAATGACTTG
TACACAGAATTTTCGACGCCCGCGACCCCTGGTGTACCGCAACCAACTAC
TTGCGGAACTGCTTCAAAAGGGACTCATTCTATCGACGTGAAAATGCCTC
CCGTAGGTTCAGTATCCGTTGTAAGCGTCTGCAACTTGGAGAAGCATTTG
TTCTTGGAGGAGGCTTTGGAGCTCCATGGGGACAGGCGAGACTTTGCTAT
CGTGGGAAGGGAGCGCCTGTCCAAAGGGAAGAATGTGCAAGCAACTGCTG
TGCTAGTTCGATACGAGAATGATGAAATGCAGGCACTTGAGGTCAACGTG
TTGCGGCATTACGGAAGTGCCGCGCACAATGAAGACATGTCGGACCATAG
ATCGCCGTGGGATTCGGCTGATGTACAAACTATTGCCCGTACAATCGTTT
CGAACTTTCATGACTTGCGATACACCACCTCACCTCCATGTTGGCCGGTG
CCAAGATGGCTTAGTATGCACCCTGTCCACATAGATGCAATTCGTGGCTA
TCAAGCGAATTTAAGACTCTTGCACCGGTACGGATTTGGCGCACAAGCTG
TAGGTTCGCGGTAG
back to top