Gchil5778.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5778.t1
Unique NameGchil5778.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length136
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000015_piloncontigtig00000015_pilon:1561806..1562213 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1313421.JHBV01000005_gene4605
Max annot lvl2|Bacteria
Evalue5.4e-09
EggNOG OGs2DRDD@1|root,33BAA@2|Bacteria
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5778Gchil5778Gracilaria chilensis NLEC103_M9 malegenetig00000015_pilon 1561806..1562213 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5778.t1.start1Gchil5778.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000015_pilon 1561806..1561808 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5778.t1.CDS1Gchil5778.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000015_pilon 1561806..1562213 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5778.t1.exon1Gchil5778.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000015_pilon 1561806..1562213 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5778.t1.stop1Gchil5778.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000015_pilon 1562211..1562213 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5778.t1Gchil5778.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000015_pilon 1561806..1562213 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5778.t1 ID=Gchil5778.t1|Name=Gchil5778.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=136bp
MQSLLKNTLAFILGLVTSSVVMSAVQSLGSRAFPVSPSPESPMKHVLSPP
LGAYLFMEASYILGSILGGFVLAKLACSHTGELIMALGIVLTVFGVQNVI
TIAHPLWFAVVSLCTFLPGVHYGAKLAHTGGSEFV*
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spliced messenger RNA

>Gchil5778.t1 ID=Gchil5778.t1|Name=Gchil5778.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=408bp|location=Sequence derived from alignment at tig00000015_pilon:1561806..1562213+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAATCATTGTTGAAAAACACATTGGCGTTCATATTGGGACTCGTGAC
GAGCTCCGTAGTAATGTCTGCGGTGCAATCGTTGGGGAGTCGCGCGTTCC
CGGTGTCGCCGTCCCCCGAATCGCCGATGAAACACGTACTATCGCCGCCG
CTGGGGGCGTATCTGTTCATGGAGGCGTCGTATATACTCGGGAGCATCCT
CGGAGGATTTGTGCTCGCTAAGCTGGCATGCAGCCACACGGGGGAGCTTA
TTATGGCGCTTGGAATCGTGTTGACAGTGTTTGGGGTGCAGAACGTGATC
ACGATTGCGCATCCGTTGTGGTTTGCCGTGGTTTCGCTGTGCACGTTTTT
GCCGGGCGTTCATTATGGAGCCAAACTGGCGCACACCGGCGGGTCGGAGT
TTGTTTGA
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protein sequence of Gchil5778.t1

>Gchil5778.t1 ID=Gchil5778.t1|Name=Gchil5778.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=136bp
MQSLLKNTLAFILGLVTSSVVMSAVQSLGSRAFPVSPSPESPMKHVLSPP
LGAYLFMEASYILGSILGGFVLAKLACSHTGELIMALGIVLTVFGVQNVI
TIAHPLWFAVVSLCTFLPGVHYGAKLAHTGGSEFV*
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mRNA from alignment at tig00000015_pilon:1561806..1562213+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5778.t1 ID=Gchil5778.t1|Name=Gchil5778.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=408bp|location=Sequence derived from alignment at tig00000015_pilon:1561806..1562213+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAATCATTGTTGAAAAACACATTGGCGTTCATATTGGGACTCGTGAC
GAGCTCCGTAGTAATGTCTGCGGTGCAATCGTTGGGGAGTCGCGCGTTCC
CGGTGTCGCCGTCCCCCGAATCGCCGATGAAACACGTACTATCGCCGCCG
CTGGGGGCGTATCTGTTCATGGAGGCGTCGTATATACTCGGGAGCATCCT
CGGAGGATTTGTGCTCGCTAAGCTGGCATGCAGCCACACGGGGGAGCTTA
TTATGGCGCTTGGAATCGTGTTGACAGTGTTTGGGGTGCAGAACGTGATC
ACGATTGCGCATCCGTTGTGGTTTGCCGTGGTTTCGCTGTGCACGTTTTT
GCCGGGCGTTCATTATGGAGCCAAACTGGCGCACACCGGCGGGTCGGAGT
TTGTTTGA
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Coding sequence (CDS) from alignment at tig00000015_pilon:1561806..1562213+

>Gchil5778.t1 ID=Gchil5778.t1|Name=Gchil5778.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=408bp|location=Sequence derived from alignment at tig00000015_pilon:1561806..1562213+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAATCATTGTTGAAAAACACATTGGCGTTCATATTGGGACTCGTGAC
GAGCTCCGTAGTAATGTCTGCGGTGCAATCGTTGGGGAGTCGCGCGTTCC
CGGTGTCGCCGTCCCCCGAATCGCCGATGAAACACGTACTATCGCCGCCG
CTGGGGGCGTATCTGTTCATGGAGGCGTCGTATATACTCGGGAGCATCCT
CGGAGGATTTGTGCTCGCTAAGCTGGCATGCAGCCACACGGGGGAGCTTA
TTATGGCGCTTGGAATCGTGTTGACAGTGTTTGGGGTGCAGAACGTGATC
ACGATTGCGCATCCGTTGTGGTTTGCCGTGGTTTCGCTGTGCACGTTTTT
GCCGGGCGTTCATTATGGAGCCAAACTGGCGCACACCGGCGGGTCGGAGT
TTGTTTGA
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