Gchil1617.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1617.t1
Unique NameGchil1617.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length238
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:1173675..1174388 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005704272.1
Preferred namePSMC3IP
PFAMsTBPIP
Max annot lvl2759|Eukaryota
KEGG koko:K06695
GOsGO:0000003,GO:0000228,GO:0000280,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003712,GO:0003713,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006310,GO:0006355,GO:0006357,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007129,GO:0007131,GO:0008134,GO:0008150,GO:0008152,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0019219,GO:0019222,GO:0019904,GO:0022402,GO:0022414,GO:0022607,GO:0030331,GO:0030374,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0034641,GO:0035257,GO:0035258,GO:0035259,GO:0035825,GO:0042802,GO:0042803,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046966,GO:0046983,GO:0048285,GO:0048518,GO:0048522,GO:0050681,GO:0050692,GO:0050789,GO:0050794,GO:0051026,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051276,GO:0051321,GO:0051427,GO:0060255,GO:0061982,GO:0065007,GO:0070013,GO:0070192,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0098813,GO:0140013,GO:0140110,GO:1901360,GO:1901363,GO:1902680,GO:1903046,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Evalue2.43e-38
EggNOG OGsKOG4603@1|root,KOG4603@2759|Eukaryota
Descriptionhomologous recombination
COG categoryS
BRITEko00000,ko03051
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1617Gchil1617Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 1173675..1174388 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1617.t1.stop1Gchil1617.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 1173675..1173677 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1617.t1.CDS1Gchil1617.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 1173675..1174388 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1617.t1.exon1Gchil1617.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 1173675..1174388 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1617.t1.start1Gchil1617.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 1174386..1174388 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1617.t1Gchil1617.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 1173675..1174388 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1617.t1 ID=Gchil1617.t1|Name=Gchil1617.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=238bp
MAKGKKASEDEEIVHSFLKAQNRPFSVQNIVDSLQKSGVKKTAVERSLAS
LVEKKLVTKKEYGKAKIFIASQDIIEIPNPDEVKRLDEEISELQEQLSSI
SGETDQLSGVASALRAELTLDEAKKRTKELIEETEQKEQKLASLGDGSSL
MSKEDKEKLELFYYQARSLWKKYKRIVTDITDAIGEASGKKLEELFEELG
IDSDAAANVKLSDFPDMKNPVKRKGTAVGHTNKKAKK*
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spliced messenger RNA

>Gchil1617.t1 ID=Gchil1617.t1|Name=Gchil1617.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=714bp|location=Sequence derived from alignment at tig00004403_pilon:1173675..1174388- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCAAAGGGAAAAAGGCCTCTGAGGACGAGGAGATCGTGCACAGCTT
TCTCAAAGCTCAGAACCGACCATTCAGCGTCCAAAACATTGTCGATTCTC
TCCAGAAATCTGGCGTCAAGAAGACCGCTGTAGAGCGTTCGCTCGCGTCG
CTGGTTGAAAAGAAGCTTGTTACCAAGAAGGAGTACGGAAAAGCAAAGAT
ATTCATCGCTTCTCAGGATATTATCGAAATCCCAAATCCGGACGAAGTGA
AGCGTTTGGATGAAGAAATTTCTGAGTTGCAGGAGCAGCTATCGTCCATC
TCAGGAGAAACTGATCAGCTCTCGGGGGTTGCGAGTGCACTTCGAGCGGA
ACTCACGTTAGACGAAGCAAAAAAACGCACCAAAGAGCTTATTGAAGAAA
CGGAACAAAAGGAACAAAAACTTGCATCACTGGGGGATGGCTCTTCTTTG
ATGTCCAAAGAAGACAAGGAAAAACTAGAGCTTTTCTACTATCAGGCTCG
AAGCCTGTGGAAGAAATACAAGCGTATTGTTACCGACATAACGGACGCAA
TAGGCGAAGCAAGCGGAAAGAAACTTGAAGAACTATTCGAAGAGCTTGGT
ATAGACAGTGATGCAGCCGCAAACGTGAAGCTTAGCGACTTCCCGGACAT
GAAGAACCCCGTCAAAAGAAAAGGGACAGCAGTCGGACACACGAACAAGA
AAGCCAAAAAGTAG
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protein sequence of Gchil1617.t1

>Gchil1617.t1 ID=Gchil1617.t1|Name=Gchil1617.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=238bp
MAKGKKASEDEEIVHSFLKAQNRPFSVQNIVDSLQKSGVKKTAVERSLAS
LVEKKLVTKKEYGKAKIFIASQDIIEIPNPDEVKRLDEEISELQEQLSSI
SGETDQLSGVASALRAELTLDEAKKRTKELIEETEQKEQKLASLGDGSSL
MSKEDKEKLELFYYQARSLWKKYKRIVTDITDAIGEASGKKLEELFEELG
IDSDAAANVKLSDFPDMKNPVKRKGTAVGHTNKKAKK*
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mRNA from alignment at tig00004403_pilon:1173675..1174388-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1617.t1 ID=Gchil1617.t1|Name=Gchil1617.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=714bp|location=Sequence derived from alignment at tig00004403_pilon:1173675..1174388- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCAAAGGGAAAAAGGCCTCTGAGGACGAGGAGATCGTGCACAGCTT
TCTCAAAGCTCAGAACCGACCATTCAGCGTCCAAAACATTGTCGATTCTC
TCCAGAAATCTGGCGTCAAGAAGACCGCTGTAGAGCGTTCGCTCGCGTCG
CTGGTTGAAAAGAAGCTTGTTACCAAGAAGGAGTACGGAAAAGCAAAGAT
ATTCATCGCTTCTCAGGATATTATCGAAATCCCAAATCCGGACGAAGTGA
AGCGTTTGGATGAAGAAATTTCTGAGTTGCAGGAGCAGCTATCGTCCATC
TCAGGAGAAACTGATCAGCTCTCGGGGGTTGCGAGTGCACTTCGAGCGGA
ACTCACGTTAGACGAAGCAAAAAAACGCACCAAAGAGCTTATTGAAGAAA
CGGAACAAAAGGAACAAAAACTTGCATCACTGGGGGATGGCTCTTCTTTG
ATGTCCAAAGAAGACAAGGAAAAACTAGAGCTTTTCTACTATCAGGCTCG
AAGCCTGTGGAAGAAATACAAGCGTATTGTTACCGACATAACGGACGCAA
TAGGCGAAGCAAGCGGAAAGAAACTTGAAGAACTATTCGAAGAGCTTGGT
ATAGACAGTGATGCAGCCGCAAACGTGAAGCTTAGCGACTTCCCGGACAT
GAAGAACCCCGTCAAAAGAAAAGGGACAGCAGTCGGACACACGAACAAGA
AAGCCAAAAAGTAG
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Coding sequence (CDS) from alignment at tig00004403_pilon:1173675..1174388-

>Gchil1617.t1 ID=Gchil1617.t1|Name=Gchil1617.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=714bp|location=Sequence derived from alignment at tig00004403_pilon:1173675..1174388- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCAAAGGGAAAAAGGCCTCTGAGGACGAGGAGATCGTGCACAGCTT
TCTCAAAGCTCAGAACCGACCATTCAGCGTCCAAAACATTGTCGATTCTC
TCCAGAAATCTGGCGTCAAGAAGACCGCTGTAGAGCGTTCGCTCGCGTCG
CTGGTTGAAAAGAAGCTTGTTACCAAGAAGGAGTACGGAAAAGCAAAGAT
ATTCATCGCTTCTCAGGATATTATCGAAATCCCAAATCCGGACGAAGTGA
AGCGTTTGGATGAAGAAATTTCTGAGTTGCAGGAGCAGCTATCGTCCATC
TCAGGAGAAACTGATCAGCTCTCGGGGGTTGCGAGTGCACTTCGAGCGGA
ACTCACGTTAGACGAAGCAAAAAAACGCACCAAAGAGCTTATTGAAGAAA
CGGAACAAAAGGAACAAAAACTTGCATCACTGGGGGATGGCTCTTCTTTG
ATGTCCAAAGAAGACAAGGAAAAACTAGAGCTTTTCTACTATCAGGCTCG
AAGCCTGTGGAAGAAATACAAGCGTATTGTTACCGACATAACGGACGCAA
TAGGCGAAGCAAGCGGAAAGAAACTTGAAGAACTATTCGAAGAGCTTGGT
ATAGACAGTGATGCAGCCGCAAACGTGAAGCTTAGCGACTTCCCGGACAT
GAAGAACCCCGTCAAAAGAAAAGGGACAGCAGTCGGACACACGAACAAGA
AAGCCAAAAAGTAG
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