Gchil1533.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil1533.t1
Unique NameGchil1533.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length435
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004403_piloncontigtig00004403_pilon:800678..801982 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil1533Gchil1533Gracilaria chilensis NLEC103_M9 malegenetig00004403_pilon 800678..801982 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1533.t1.stop1Gchil1533.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004403_pilon 800678..800680 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1533.t1.CDS1Gchil1533.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004403_pilon 800678..801982 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1533.t1.exon1Gchil1533.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004403_pilon 800678..801982 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1533.t1.start1Gchil1533.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004403_pilon 801980..801982 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil1533.t1Gchil1533.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004403_pilon 800678..801982 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil1533.t1 ID=Gchil1533.t1|Name=Gchil1533.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=435bp
MIWNTLRAREVGKSASKDLVWRAELNTLSTLQLKPTWNTQFKPVARGCRD
YIVQFSASQDEALLAAASSNGMIEIHEPDDSDSLRLRLRSNHSSKVAACT
WGKGRGDHLYVAHEAGTIHQYDLNQCDPNAPTNAISNLGNKRHLTDIISL
EPNVFAVAHHELLHMYDIRESWRRKISTTTRIGKEIAVAGDGLELYIASP
GNISLYDRRQLPQGRAFLSMERSGKNIVLQRHLPEHSRLDMLRILMGAPR
GFLFYRTAKGTAGYIDMLGKESGEHITPAHPPVFADSSQVSLGETGLQSY
GTLRQSYDLSWHVRRRLGDVVCGAHGTGWRAIFPQTFRSSFEVILFGHGR
PMESYERSLGNEIASMYAIGRKLGRILIGGIRNEMQLLEVDCSLTPSPLH
NPRRTEPKAPPRTWWSRMRDENDSDMTRDNEELT*
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spliced messenger RNA

>Gchil1533.t1 ID=Gchil1533.t1|Name=Gchil1533.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00004403_pilon:800678..801982- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTTGGAACACACTGCGCGCTCGCGAAGTGGGCAAGTCCGCATCCAA
AGATTTGGTATGGAGAGCGGAGCTGAATACCCTTTCCACTCTTCAATTGA
AACCAACATGGAACACTCAATTCAAGCCAGTGGCTCGGGGTTGTCGTGAC
TACATTGTGCAGTTCAGTGCATCTCAAGACGAAGCCTTACTAGCCGCAGC
ATCTTCCAATGGCATGATAGAGATACATGAGCCGGACGACTCTGATTCAT
TGCGACTTCGACTGAGAAGCAATCATTCCTCTAAAGTCGCGGCATGTACG
TGGGGAAAGGGCCGCGGCGACCATCTTTACGTTGCGCATGAGGCCGGCAC
GATCCACCAGTACGACCTGAACCAATGTGATCCCAATGCCCCGACAAATG
CGATTTCGAATCTGGGGAACAAACGACACCTTACGGACATTATCTCATTG
GAACCAAATGTCTTTGCCGTCGCCCATCACGAGCTCCTTCACATGTACGA
CATCCGAGAGTCGTGGAGGAGAAAAATCAGTACCACCACGCGAATAGGCA
AGGAAATTGCCGTTGCTGGAGACGGACTAGAACTATACATCGCCTCGCCG
GGAAATATTTCCTTATATGACCGTCGACAGCTTCCGCAAGGGCGTGCTTT
CCTCAGCATGGAACGGTCGGGCAAAAATATTGTCCTACAACGTCATCTTC
CAGAGCACTCTCGGCTGGACATGTTGCGAATACTGATGGGCGCCCCAAGA
GGTTTTTTGTTCTATCGTACAGCCAAGGGGACTGCGGGGTATATTGACAT
GCTTGGAAAAGAAAGCGGAGAGCACATTACGCCCGCTCATCCTCCTGTTT
TCGCAGACTCGTCTCAAGTCAGTCTTGGCGAAACTGGGTTGCAATCGTAT
GGAACATTGAGGCAATCCTACGATCTGTCATGGCACGTGCGGAGACGGCT
TGGAGACGTTGTGTGCGGGGCGCACGGTACCGGTTGGAGAGCAATATTCC
CGCAGACGTTTCGGTCGTCATTTGAGGTAATACTGTTCGGACATGGAAGA
CCCATGGAGAGCTATGAAAGATCTCTTGGAAATGAGATTGCCAGCATGTA
CGCTATTGGTCGAAAGCTAGGTCGCATCTTGATCGGGGGAATCCGGAATG
AAATGCAATTGCTGGAAGTAGATTGCTCACTTACACCAAGCCCTCTTCAC
AATCCACGCCGGACAGAGCCAAAAGCGCCGCCCAGAACTTGGTGGTCCCG
TATGAGAGACGAGAACGACAGTGATATGACGCGGGACAATGAGGAGTTGA
CCTGA
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protein sequence of Gchil1533.t1

>Gchil1533.t1 ID=Gchil1533.t1|Name=Gchil1533.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=435bp
MIWNTLRAREVGKSASKDLVWRAELNTLSTLQLKPTWNTQFKPVARGCRD
YIVQFSASQDEALLAAASSNGMIEIHEPDDSDSLRLRLRSNHSSKVAACT
WGKGRGDHLYVAHEAGTIHQYDLNQCDPNAPTNAISNLGNKRHLTDIISL
EPNVFAVAHHELLHMYDIRESWRRKISTTTRIGKEIAVAGDGLELYIASP
GNISLYDRRQLPQGRAFLSMERSGKNIVLQRHLPEHSRLDMLRILMGAPR
GFLFYRTAKGTAGYIDMLGKESGEHITPAHPPVFADSSQVSLGETGLQSY
GTLRQSYDLSWHVRRRLGDVVCGAHGTGWRAIFPQTFRSSFEVILFGHGR
PMESYERSLGNEIASMYAIGRKLGRILIGGIRNEMQLLEVDCSLTPSPLH
NPRRTEPKAPPRTWWSRMRDENDSDMTRDNEELT*
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mRNA from alignment at tig00004403_pilon:800678..801982-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil1533.t1 ID=Gchil1533.t1|Name=Gchil1533.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1305bp|location=Sequence derived from alignment at tig00004403_pilon:800678..801982- (Gracilaria chilensis NLEC103_M9 male)
ATGATTTGGAACACACTGCGCGCTCGCGAAGTGGGCAAGTCCGCATCCAA
AGATTTGGTATGGAGAGCGGAGCTGAATACCCTTTCCACTCTTCAATTGA
AACCAACATGGAACACTCAATTCAAGCCAGTGGCTCGGGGTTGTCGTGAC
TACATTGTGCAGTTCAGTGCATCTCAAGACGAAGCCTTACTAGCCGCAGC
ATCTTCCAATGGCATGATAGAGATACATGAGCCGGACGACTCTGATTCAT
TGCGACTTCGACTGAGAAGCAATCATTCCTCTAAAGTCGCGGCATGTACG
TGGGGAAAGGGCCGCGGCGACCATCTTTACGTTGCGCATGAGGCCGGCAC
GATCCACCAGTACGACCTGAACCAATGTGATCCCAATGCCCCGACAAATG
CGATTTCGAATCTGGGGAACAAACGACACCTTACGGACATTATCTCATTG
GAACCAAATGTCTTTGCCGTCGCCCATCACGAGCTCCTTCACATGTACGA
CATCCGAGAGTCGTGGAGGAGAAAAATCAGTACCACCACGCGAATAGGCA
AGGAAATTGCCGTTGCTGGAGACGGACTAGAACTATACATCGCCTCGCCG
GGAAATATTTCCTTATATGACCGTCGACAGCTTCCGCAAGGGCGTGCTTT
CCTCAGCATGGAACGGTCGGGCAAAAATATTGTCCTACAACGTCATCTTC
CAGAGCACTCTCGGCTGGACATGTTGCGAATACTGATGGGCGCCCCAAGA
GGTTTTTTGTTCTATCGTACAGCCAAGGGGACTGCGGGGTATATTGACAT
GCTTGGAAAAGAAAGCGGAGAGCACATTACGCCCGCTCATCCTCCTGTTT
TCGCAGACTCGTCTCAAGTCAGTCTTGGCGAAACTGGGTTGCAATCGTAT
GGAACATTGAGGCAATCCTACGATCTGTCATGGCACGTGCGGAGACGGCT
TGGAGACGTTGTGTGCGGGGCGCACGGTACCGGTTGGAGAGCAATATTCC
CGCAGACGTTTCGGTCGTCATTTGAGGTAATACTGTTCGGACATGGAAGA
CCCATGGAGAGCTATGAAAGATCTCTTGGAAATGAGATTGCCAGCATGTA
CGCTATTGGTCGAAAGCTAGGTCGCATCTTGATCGGGGGAATCCGGAATG
AAATGCAATTGCTGGAAGTAGATTGCTCACTTACACCAAGCCCTCTTCAC
AATCCACGCCGGACAGAGCCAAAAGCGCCGCCCAGAACTTGGTGGTCCCG
TATGAGAGACGAGAACGACAGTGATATGACGCGGGACAATGAGGAGTTGA
CCTGA
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Coding sequence (CDS) from alignment at tig00004403_pilon:800678..801982-

>Gchil1533.t1 ID=Gchil1533.t1|Name=Gchil1533.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1305bp|location=Sequence derived from alignment at tig00004403_pilon:800678..801982- (Gracilaria chilensis NLEC103_M9 male)
ATGATTTGGAACACACTGCGCGCTCGCGAAGTGGGCAAGTCCGCATCCAA
AGATTTGGTATGGAGAGCGGAGCTGAATACCCTTTCCACTCTTCAATTGA
AACCAACATGGAACACTCAATTCAAGCCAGTGGCTCGGGGTTGTCGTGAC
TACATTGTGCAGTTCAGTGCATCTCAAGACGAAGCCTTACTAGCCGCAGC
ATCTTCCAATGGCATGATAGAGATACATGAGCCGGACGACTCTGATTCAT
TGCGACTTCGACTGAGAAGCAATCATTCCTCTAAAGTCGCGGCATGTACG
TGGGGAAAGGGCCGCGGCGACCATCTTTACGTTGCGCATGAGGCCGGCAC
GATCCACCAGTACGACCTGAACCAATGTGATCCCAATGCCCCGACAAATG
CGATTTCGAATCTGGGGAACAAACGACACCTTACGGACATTATCTCATTG
GAACCAAATGTCTTTGCCGTCGCCCATCACGAGCTCCTTCACATGTACGA
CATCCGAGAGTCGTGGAGGAGAAAAATCAGTACCACCACGCGAATAGGCA
AGGAAATTGCCGTTGCTGGAGACGGACTAGAACTATACATCGCCTCGCCG
GGAAATATTTCCTTATATGACCGTCGACAGCTTCCGCAAGGGCGTGCTTT
CCTCAGCATGGAACGGTCGGGCAAAAATATTGTCCTACAACGTCATCTTC
CAGAGCACTCTCGGCTGGACATGTTGCGAATACTGATGGGCGCCCCAAGA
GGTTTTTTGTTCTATCGTACAGCCAAGGGGACTGCGGGGTATATTGACAT
GCTTGGAAAAGAAAGCGGAGAGCACATTACGCCCGCTCATCCTCCTGTTT
TCGCAGACTCGTCTCAAGTCAGTCTTGGCGAAACTGGGTTGCAATCGTAT
GGAACATTGAGGCAATCCTACGATCTGTCATGGCACGTGCGGAGACGGCT
TGGAGACGTTGTGTGCGGGGCGCACGGTACCGGTTGGAGAGCAATATTCC
CGCAGACGTTTCGGTCGTCATTTGAGGTAATACTGTTCGGACATGGAAGA
CCCATGGAGAGCTATGAAAGATCTCTTGGAAATGAGATTGCCAGCATGTA
CGCTATTGGTCGAAAGCTAGGTCGCATCTTGATCGGGGGAATCCGGAATG
AAATGCAATTGCTGGAAGTAGATTGCTCACTTACACCAAGCCCTCTTCAC
AATCCACGCCGGACAGAGCCAAAAGCGCCGCCCAGAACTTGGTGGTCCCG
TATGAGAGACGAGAACGACAGTGATATGACGCGGGACAATGAGGAGTTGA
CCTGA
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