Gchil1612.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil1612.t1
Unique Name	Gchil1612.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	379

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004403_pilon	contig	tig00004403_pilon:1164364..1165500 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	88036.EFJ07294
PFAMs	Ground-like,Hint,Kelch_4
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K06224,ko:K11990,ko:K16669
KEGG Pathway	ko04340,ko04341,ko04391,ko04392,map04340,map04341,map04391,map04392
KEGG Module	M00678
GOs	GO:0003002,GO:0003674,GO:0003824,GO:0004175,GO:0005102,GO:0005488,GO:0005496,GO:0005515,GO:0005575,GO:0005576,GO:0005623,GO:0005886,GO:0006508,GO:0006807,GO:0007154,GO:0007267,GO:0007275,GO:0007350,GO:0007365,GO:0007367,GO:0007389,GO:0008150,GO:0008152,GO:0008233,GO:0008289,GO:0009790,GO:0009880,GO:0009987,GO:0010467,GO:0015485,GO:0016020,GO:0016485,GO:0016540,GO:0016787,GO:0019538,GO:0023052,GO:0032501,GO:0032502,GO:0032934,GO:0035282,GO:0036094,GO:0043170,GO:0043178,GO:0044238,GO:0044464,GO:0048856,GO:0051604,GO:0070011,GO:0071704,GO:0071944,GO:0097159,GO:0140096,GO:1901564
Evalue	1.59e-25
EggNOG OGs	KOG3638@1\|root,KOG3638@2759\|Eukaryota
Description	intein-mediated protein splicing
COG category	M
BRITE	ko00000,ko00001,ko00002,ko00536,ko01002,ko04516

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil1612	Gchil1612	Gracilaria chilensis NLEC103_M9 male	gene	tig00004403_pilon 1164364..1165500 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1612.t1.start1	Gchil1612.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004403_pilon 1164364..1164366 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1612.t1.CDS1	Gchil1612.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004403_pilon 1164364..1165500 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1612.t1.exon1	Gchil1612.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004403_pilon 1164364..1165500 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1612.t1.stop1	Gchil1612.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004403_pilon 1165498..1165500 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil1612.t1	Gchil1612.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004403_pilon 1164364..1165500 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004403_pilon:1164364..1165500+
coding sequence from alignment at tig00004403_pilon:1164364..1165500+

mRNA sequence

>Gchil1612.t1 ID=Gchil1612.t1|Name=Gchil1612.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=379bp
MEVVPGTPVNEECSRLVKHFSEAKDNGNGTVSIATGSIHHNTNKCEKGTM
LMYDNPEQNPVSGVGGSDATFENLKKSDGFWVGESTRNCGRWKLPNPTAV
FMVYDGDTDLVGPFEVPLHKGSTYMIFTNARYTCIYRDVERPSPRPSPIP
TKALLSEADGETFSAAESINDGDTVAVPVTVLPGVPKETVEASSDEDDGS
TCFPADATVEVEGGATKKMADITIGDSVRVGPNEFSEVFMFTHKLDNVAH
EFVEIETESAQITLTSGHYLYVNGALAAAKTVEVGDKLEVASGETAIVLA
VKSIMSSGLYNPQTMSGDILVNGIRASTYTTAVEPMLAHRLLTPLRALYG
VFGVAISAFNNGADSLAKIAPHGAAVVA*

spliced messenger RNA

>Gchil1612.t1 ID=Gchil1612.t1|Name=Gchil1612.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00004403_pilon:1164364..1165500+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGTTGTGCCTGGAACACCGGTGAACGAAGAGTGCTCTCGCCTTGT
AAAGCACTTTAGTGAAGCCAAAGATAATGGAAATGGTACCGTCTCGATTG
CGACCGGCTCTATTCATCACAACACCAATAAATGCGAAAAGGGAACTATG
TTAATGTATGACAACCCGGAGCAAAACCCAGTTTCTGGAGTTGGTGGGTC
CGACGCAACTTTCGAGAACCTTAAGAAATCTGATGGCTTTTGGGTAGGTG
AGTCTACGCGGAATTGTGGGCGTTGGAAGCTTCCTAATCCGACGGCAGTC
TTCATGGTTTATGATGGAGACACTGATTTGGTTGGTCCGTTCGAGGTGCC
GCTTCACAAAGGCAGCACTTACATGATTTTCACAAATGCCCGCTACACAT
GCATTTATCGTGACGTTGAGAGACCGTCTCCGAGACCGTCCCCCATTCCA
ACGAAGGCTCTGCTTTCCGAAGCTGATGGAGAGACATTCTCAGCCGCCGA
GAGTATTAATGACGGGGATACCGTTGCCGTCCCCGTCACAGTTCTCCCCG
GAGTACCAAAAGAAACAGTCGAAGCATCCTCTGATGAGGATGATGGTTCC
ACGTGTTTCCCTGCTGATGCAACTGTGGAAGTTGAAGGTGGTGCCACCAA
AAAGATGGCTGACATCACTATTGGGGATAGTGTTCGGGTGGGACCCAATG
AGTTCTCTGAAGTGTTCATGTTTACTCATAAGCTTGATAATGTTGCACAT
GAATTTGTTGAAATCGAAACTGAATCGGCTCAGATAACTCTTACTTCGGG
TCACTATCTGTACGTCAATGGTGCTTTGGCAGCTGCGAAAACCGTCGAAG
TTGGTGATAAGCTCGAGGTCGCTTCAGGCGAGACTGCCATAGTTCTAGCT
GTCAAATCTATTATGTCATCTGGTTTGTATAACCCTCAAACTATGTCTGG
AGATATTTTGGTTAACGGCATTCGTGCTTCTACATATACAACCGCTGTTG
AGCCAATGCTTGCTCATCGCCTCCTCACCCCGCTGCGAGCGTTATACGGC
GTTTTTGGTGTTGCCATCTCAGCTTTCAACAACGGTGCCGACTCCCTGGC
CAAAATTGCCCCTCATGGTGCCGCCGTTGTCGCGTAA

protein sequence of Gchil1612.t1

>Gchil1612.t1 ID=Gchil1612.t1|Name=Gchil1612.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=379bp
MEVVPGTPVNEECSRLVKHFSEAKDNGNGTVSIATGSIHHNTNKCEKGTM
LMYDNPEQNPVSGVGGSDATFENLKKSDGFWVGESTRNCGRWKLPNPTAV
FMVYDGDTDLVGPFEVPLHKGSTYMIFTNARYTCIYRDVERPSPRPSPIP
TKALLSEADGETFSAAESINDGDTVAVPVTVLPGVPKETVEASSDEDDGS
TCFPADATVEVEGGATKKMADITIGDSVRVGPNEFSEVFMFTHKLDNVAH
EFVEIETESAQITLTSGHYLYVNGALAAAKTVEVGDKLEVASGETAIVLA
VKSIMSSGLYNPQTMSGDILVNGIRASTYTTAVEPMLAHRLLTPLRALYG
VFGVAISAFNNGADSLAKIAPHGAAVVA*

mRNA from alignment at tig00004403_pilon:1164364..1165500+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil1612.t1 ID=Gchil1612.t1|Name=Gchil1612.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00004403_pilon:1164364..1165500+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGTTGTGCCTGGAACACCGGTGAACGAAGAGTGCTCTCGCCTTGT
AAAGCACTTTAGTGAAGCCAAAGATAATGGAAATGGTACCGTCTCGATTG
CGACCGGCTCTATTCATCACAACACCAATAAATGCGAAAAGGGAACTATG
TTAATGTATGACAACCCGGAGCAAAACCCAGTTTCTGGAGTTGGTGGGTC
CGACGCAACTTTCGAGAACCTTAAGAAATCTGATGGCTTTTGGGTAGGTG
AGTCTACGCGGAATTGTGGGCGTTGGAAGCTTCCTAATCCGACGGCAGTC
TTCATGGTTTATGATGGAGACACTGATTTGGTTGGTCCGTTCGAGGTGCC
GCTTCACAAAGGCAGCACTTACATGATTTTCACAAATGCCCGCTACACAT
GCATTTATCGTGACGTTGAGAGACCGTCTCCGAGACCGTCCCCCATTCCA
ACGAAGGCTCTGCTTTCCGAAGCTGATGGAGAGACATTCTCAGCCGCCGA
GAGTATTAATGACGGGGATACCGTTGCCGTCCCCGTCACAGTTCTCCCCG
GAGTACCAAAAGAAACAGTCGAAGCATCCTCTGATGAGGATGATGGTTCC
ACGTGTTTCCCTGCTGATGCAACTGTGGAAGTTGAAGGTGGTGCCACCAA
AAAGATGGCTGACATCACTATTGGGGATAGTGTTCGGGTGGGACCCAATG
AGTTCTCTGAAGTGTTCATGTTTACTCATAAGCTTGATAATGTTGCACAT
GAATTTGTTGAAATCGAAACTGAATCGGCTCAGATAACTCTTACTTCGGG
TCACTATCTGTACGTCAATGGTGCTTTGGCAGCTGCGAAAACCGTCGAAG
TTGGTGATAAGCTCGAGGTCGCTTCAGGCGAGACTGCCATAGTTCTAGCT
GTCAAATCTATTATGTCATCTGGTTTGTATAACCCTCAAACTATGTCTGG
AGATATTTTGGTTAACGGCATTCGTGCTTCTACATATACAACCGCTGTTG
AGCCAATGCTTGCTCATCGCCTCCTCACCCCGCTGCGAGCGTTATACGGC
GTTTTTGGTGTTGCCATCTCAGCTTTCAACAACGGTGCCGACTCCCTGGC
CAAAATTGCCCCTCATGGTGCCGCCGTTGTCGCGTAA

Coding sequence (CDS) from alignment at tig00004403_pilon:1164364..1165500+

>Gchil1612.t1 ID=Gchil1612.t1|Name=Gchil1612.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1137bp|location=Sequence derived from alignment at tig00004403_pilon:1164364..1165500+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGTTGTGCCTGGAACACCGGTGAACGAAGAGTGCTCTCGCCTTGT
AAAGCACTTTAGTGAAGCCAAAGATAATGGAAATGGTACCGTCTCGATTG
CGACCGGCTCTATTCATCACAACACCAATAAATGCGAAAAGGGAACTATG
TTAATGTATGACAACCCGGAGCAAAACCCAGTTTCTGGAGTTGGTGGGTC
CGACGCAACTTTCGAGAACCTTAAGAAATCTGATGGCTTTTGGGTAGGTG
AGTCTACGCGGAATTGTGGGCGTTGGAAGCTTCCTAATCCGACGGCAGTC
TTCATGGTTTATGATGGAGACACTGATTTGGTTGGTCCGTTCGAGGTGCC
GCTTCACAAAGGCAGCACTTACATGATTTTCACAAATGCCCGCTACACAT
GCATTTATCGTGACGTTGAGAGACCGTCTCCGAGACCGTCCCCCATTCCA
ACGAAGGCTCTGCTTTCCGAAGCTGATGGAGAGACATTCTCAGCCGCCGA
GAGTATTAATGACGGGGATACCGTTGCCGTCCCCGTCACAGTTCTCCCCG
GAGTACCAAAAGAAACAGTCGAAGCATCCTCTGATGAGGATGATGGTTCC
ACGTGTTTCCCTGCTGATGCAACTGTGGAAGTTGAAGGTGGTGCCACCAA
AAAGATGGCTGACATCACTATTGGGGATAGTGTTCGGGTGGGACCCAATG
AGTTCTCTGAAGTGTTCATGTTTACTCATAAGCTTGATAATGTTGCACAT
GAATTTGTTGAAATCGAAACTGAATCGGCTCAGATAACTCTTACTTCGGG
TCACTATCTGTACGTCAATGGTGCTTTGGCAGCTGCGAAAACCGTCGAAG
TTGGTGATAAGCTCGAGGTCGCTTCAGGCGAGACTGCCATAGTTCTAGCT
GTCAAATCTATTATGTCATCTGGTTTGTATAACCCTCAAACTATGTCTGG
AGATATTTTGGTTAACGGCATTCGTGCTTCTACATATACAACCGCTGTTG
AGCCAATGCTTGCTCATCGCCTCCTCACCCCGCTGCGAGCGTTATACGGC
GTTTTTGGTGTTGCCATCTCAGCTTTCAACAACGGTGCCGACTCCCTGGC
CAAAATTGCCCCTCATGGTGCCGCCGTTGTCGCGTAA