Gchil7806.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7806.t1
Unique NameGchil7806.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length498
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004401_piloncontigtig00004401_pilon:112480..113973 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7806Gchil7806Gracilaria chilensis NLEC103_M9 malegenetig00004401_pilon 112480..113973 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7806.t1.start1Gchil7806.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004401_pilon 112480..112482 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7806.t1.CDS1Gchil7806.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004401_pilon 112480..113973 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7806.t1.exon1Gchil7806.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004401_pilon 112480..113973 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7806.t1.stop1Gchil7806.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004401_pilon 113971..113973 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7806.t1Gchil7806.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004401_pilon 112480..113973 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7806.t1 ID=Gchil7806.t1|Name=Gchil7806.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=498bp
MTHLQRHPEYGLRAVHDTEIEHYLETLDTKYGCEPTFVQTVLEISSIYEE
NLSPNTLTGLNLDYDVIPDDPTVFFHEICNLARTAPFTAAACLDTSSITS
AYYNAATGGVKELERPFRAAFFIDRFVTRVRDMKDRRETPFAVLQAVAAE
PKLVDFSEYVCRYEIFIGPQESDGRIQSASFPDQTVMRAALLCIHLASGP
NVTYEQMMHAKRIRGSLQDQLKPNFTQLQDEYDRFVQTMNEEEKVNALMC
TLAGRNFLVERSDVALACYYWDPTTLREVRVALQKYAEDANGPKLYGYYR
RIAVAWTLVVSGVLLAILAGVLNWGKRENQFERVNDVFQTFLLVLSLPAF
TVKIAATNGEQAIKDWLVGACRISTMEVLEKEIHKRLRGNKRRGWIAIQR
VKCETDDKQNWTAPDNMCFKTSHLNGNLRARRDRTMADLELVFGTDGKRA
RSWVELSNETNILGRDVNHLQFTCGTTLSNKTSAFFSHTPSRRVWFA*
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spliced messenger RNA

>Gchil7806.t1 ID=Gchil7806.t1|Name=Gchil7806.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1494bp|location=Sequence derived from alignment at tig00004401_pilon:112480..113973+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACGCATCTTCAAAGGCATCCAGAGTATGGTCTACGCGCAGTTCATGA
CACCGAAATTGAGCACTACCTCGAGACACTCGACACTAAATATGGCTGCG
AACCAACATTTGTGCAAACCGTTCTCGAGATCTCAAGCATTTACGAAGAA
AACCTGTCGCCGAACACACTAACAGGTCTCAATCTGGACTATGACGTAAT
TCCGGATGACCCAACAGTGTTCTTCCATGAGATCTGCAATCTGGCACGTA
CCGCACCATTCACAGCAGCTGCTTGTTTAGATACGTCTTCTATCACTAGT
GCATATTACAACGCCGCCACCGGAGGAGTGAAGGAACTGGAACGACCGTT
TCGCGCGGCATTCTTTATAGACCGCTTTGTAACGCGTGTTCGAGATATGA
AAGACCGGCGCGAAACTCCCTTTGCAGTTTTACAAGCTGTCGCTGCGGAA
CCGAAACTCGTTGACTTCTCAGAATATGTTTGCAGATATGAGATTTTCAT
TGGGCCGCAGGAATCAGACGGTCGTATTCAATCTGCAAGCTTTCCTGACC
AGACTGTCATGCGAGCCGCGTTGTTGTGTATCCACCTTGCGTCAGGTCCA
AATGTTACATACGAACAAATGATGCACGCAAAGAGGATACGTGGGAGTTT
ACAAGATCAATTGAAGCCTAACTTTACACAGTTGCAAGATGAATATGATC
GCTTTGTGCAGACGATGAATGAGGAAGAAAAGGTAAATGCTTTGATGTGC
ACGTTGGCCGGTCGCAATTTCTTAGTTGAACGCTCAGATGTCGCGCTCGC
ATGTTACTATTGGGACCCTACAACCTTGAGAGAAGTACGCGTTGCGCTGC
AGAAGTATGCGGAAGATGCAAATGGCCCCAAGTTGTACGGGTACTACCGG
AGGATTGCTGTGGCATGGACTTTGGTTGTAAGCGGCGTTCTCCTGGCTAT
ACTGGCTGGCGTTCTGAACTGGGGGAAACGAGAGAATCAATTTGAGCGTG
TCAACGATGTGTTTCAGACGTTTCTTCTGGTCCTTTCCCTACCTGCGTTC
ACAGTTAAAATTGCCGCTACGAACGGAGAGCAAGCGATTAAGGACTGGTT
GGTTGGTGCCTGTCGAATTTCTACAATGGAAGTACTTGAAAAGGAGATCC
ACAAACGCTTGAGAGGCAACAAGCGAAGAGGTTGGATTGCAATTCAACGC
GTCAAGTGTGAGACGGATGATAAGCAGAATTGGACTGCTCCGGATAATAT
GTGTTTCAAAACGTCGCACTTGAACGGTAATCTGCGTGCGAGACGTGATA
GGACCATGGCGGATCTGGAACTTGTGTTTGGTACAGATGGAAAGAGAGCG
CGGTCTTGGGTTGAGTTATCTAACGAGACGAATATTTTGGGAAGGGATGT
GAATCATTTGCAATTCACTTGTGGGACAACTCTTTCAAACAAGACTTCGG
CTTTCTTTTCTCATACTCCGTCCAGAAGGGTTTGGTTTGCATGA
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protein sequence of Gchil7806.t1

>Gchil7806.t1 ID=Gchil7806.t1|Name=Gchil7806.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=498bp
MTHLQRHPEYGLRAVHDTEIEHYLETLDTKYGCEPTFVQTVLEISSIYEE
NLSPNTLTGLNLDYDVIPDDPTVFFHEICNLARTAPFTAAACLDTSSITS
AYYNAATGGVKELERPFRAAFFIDRFVTRVRDMKDRRETPFAVLQAVAAE
PKLVDFSEYVCRYEIFIGPQESDGRIQSASFPDQTVMRAALLCIHLASGP
NVTYEQMMHAKRIRGSLQDQLKPNFTQLQDEYDRFVQTMNEEEKVNALMC
TLAGRNFLVERSDVALACYYWDPTTLREVRVALQKYAEDANGPKLYGYYR
RIAVAWTLVVSGVLLAILAGVLNWGKRENQFERVNDVFQTFLLVLSLPAF
TVKIAATNGEQAIKDWLVGACRISTMEVLEKEIHKRLRGNKRRGWIAIQR
VKCETDDKQNWTAPDNMCFKTSHLNGNLRARRDRTMADLELVFGTDGKRA
RSWVELSNETNILGRDVNHLQFTCGTTLSNKTSAFFSHTPSRRVWFA*
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mRNA from alignment at tig00004401_pilon:112480..113973+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7806.t1 ID=Gchil7806.t1|Name=Gchil7806.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1494bp|location=Sequence derived from alignment at tig00004401_pilon:112480..113973+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGCATCTTCAAAGGCATCCAGAGTATGGTCTACGCGCAGTTCATGA
CACCGAAATTGAGCACTACCTCGAGACACTCGACACTAAATATGGCTGCG
AACCAACATTTGTGCAAACCGTTCTCGAGATCTCAAGCATTTACGAAGAA
AACCTGTCGCCGAACACACTAACAGGTCTCAATCTGGACTATGACGTAAT
TCCGGATGACCCAACAGTGTTCTTCCATGAGATCTGCAATCTGGCACGTA
CCGCACCATTCACAGCAGCTGCTTGTTTAGATACGTCTTCTATCACTAGT
GCATATTACAACGCCGCCACCGGAGGAGTGAAGGAACTGGAACGACCGTT
TCGCGCGGCATTCTTTATAGACCGCTTTGTAACGCGTGTTCGAGATATGA
AAGACCGGCGCGAAACTCCCTTTGCAGTTTTACAAGCTGTCGCTGCGGAA
CCGAAACTCGTTGACTTCTCAGAATATGTTTGCAGATATGAGATTTTCAT
TGGGCCGCAGGAATCAGACGGTCGTATTCAATCTGCAAGCTTTCCTGACC
AGACTGTCATGCGAGCCGCGTTGTTGTGTATCCACCTTGCGTCAGGTCCA
AATGTTACATACGAACAAATGATGCACGCAAAGAGGATACGTGGGAGTTT
ACAAGATCAATTGAAGCCTAACTTTACACAGTTGCAAGATGAATATGATC
GCTTTGTGCAGACGATGAATGAGGAAGAAAAGGTAAATGCTTTGATGTGC
ACGTTGGCCGGTCGCAATTTCTTAGTTGAACGCTCAGATGTCGCGCTCGC
ATGTTACTATTGGGACCCTACAACCTTGAGAGAAGTACGCGTTGCGCTGC
AGAAGTATGCGGAAGATGCAAATGGCCCCAAGTTGTACGGGTACTACCGG
AGGATTGCTGTGGCATGGACTTTGGTTGTAAGCGGCGTTCTCCTGGCTAT
ACTGGCTGGCGTTCTGAACTGGGGGAAACGAGAGAATCAATTTGAGCGTG
TCAACGATGTGTTTCAGACGTTTCTTCTGGTCCTTTCCCTACCTGCGTTC
ACAGTTAAAATTGCCGCTACGAACGGAGAGCAAGCGATTAAGGACTGGTT
GGTTGGTGCCTGTCGAATTTCTACAATGGAAGTACTTGAAAAGGAGATCC
ACAAACGCTTGAGAGGCAACAAGCGAAGAGGTTGGATTGCAATTCAACGC
GTCAAGTGTGAGACGGATGATAAGCAGAATTGGACTGCTCCGGATAATAT
GTGTTTCAAAACGTCGCACTTGAACGGTAATCTGCGTGCGAGACGTGATA
GGACCATGGCGGATCTGGAACTTGTGTTTGGTACAGATGGAAAGAGAGCG
CGGTCTTGGGTTGAGTTATCTAACGAGACGAATATTTTGGGAAGGGATGT
GAATCATTTGCAATTCACTTGTGGGACAACTCTTTCAAACAAGACTTCGG
CTTTCTTTTCTCATACTCCGTCCAGAAGGGTTTGGTTTGCATGA
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Coding sequence (CDS) from alignment at tig00004401_pilon:112480..113973+

>Gchil7806.t1 ID=Gchil7806.t1|Name=Gchil7806.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1494bp|location=Sequence derived from alignment at tig00004401_pilon:112480..113973+ (Gracilaria chilensis NLEC103_M9 male)
ATGACGCATCTTCAAAGGCATCCAGAGTATGGTCTACGCGCAGTTCATGA
CACCGAAATTGAGCACTACCTCGAGACACTCGACACTAAATATGGCTGCG
AACCAACATTTGTGCAAACCGTTCTCGAGATCTCAAGCATTTACGAAGAA
AACCTGTCGCCGAACACACTAACAGGTCTCAATCTGGACTATGACGTAAT
TCCGGATGACCCAACAGTGTTCTTCCATGAGATCTGCAATCTGGCACGTA
CCGCACCATTCACAGCAGCTGCTTGTTTAGATACGTCTTCTATCACTAGT
GCATATTACAACGCCGCCACCGGAGGAGTGAAGGAACTGGAACGACCGTT
TCGCGCGGCATTCTTTATAGACCGCTTTGTAACGCGTGTTCGAGATATGA
AAGACCGGCGCGAAACTCCCTTTGCAGTTTTACAAGCTGTCGCTGCGGAA
CCGAAACTCGTTGACTTCTCAGAATATGTTTGCAGATATGAGATTTTCAT
TGGGCCGCAGGAATCAGACGGTCGTATTCAATCTGCAAGCTTTCCTGACC
AGACTGTCATGCGAGCCGCGTTGTTGTGTATCCACCTTGCGTCAGGTCCA
AATGTTACATACGAACAAATGATGCACGCAAAGAGGATACGTGGGAGTTT
ACAAGATCAATTGAAGCCTAACTTTACACAGTTGCAAGATGAATATGATC
GCTTTGTGCAGACGATGAATGAGGAAGAAAAGGTAAATGCTTTGATGTGC
ACGTTGGCCGGTCGCAATTTCTTAGTTGAACGCTCAGATGTCGCGCTCGC
ATGTTACTATTGGGACCCTACAACCTTGAGAGAAGTACGCGTTGCGCTGC
AGAAGTATGCGGAAGATGCAAATGGCCCCAAGTTGTACGGGTACTACCGG
AGGATTGCTGTGGCATGGACTTTGGTTGTAAGCGGCGTTCTCCTGGCTAT
ACTGGCTGGCGTTCTGAACTGGGGGAAACGAGAGAATCAATTTGAGCGTG
TCAACGATGTGTTTCAGACGTTTCTTCTGGTCCTTTCCCTACCTGCGTTC
ACAGTTAAAATTGCCGCTACGAACGGAGAGCAAGCGATTAAGGACTGGTT
GGTTGGTGCCTGTCGAATTTCTACAATGGAAGTACTTGAAAAGGAGATCC
ACAAACGCTTGAGAGGCAACAAGCGAAGAGGTTGGATTGCAATTCAACGC
GTCAAGTGTGAGACGGATGATAAGCAGAATTGGACTGCTCCGGATAATAT
GTGTTTCAAAACGTCGCACTTGAACGGTAATCTGCGTGCGAGACGTGATA
GGACCATGGCGGATCTGGAACTTGTGTTTGGTACAGATGGAAAGAGAGCG
CGGTCTTGGGTTGAGTTATCTAACGAGACGAATATTTTGGGAAGGGATGT
GAATCATTTGCAATTCACTTGTGGGACAACTCTTTCAAACAAGACTTCGG
CTTTCTTTTCTCATACTCCGTCCAGAAGGGTTTGGTTTGCATGA
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