Gchil2596.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2596.t1
Unique NameGchil2596.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length287
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004400_piloncontigtig00004400_pilon:1754551..1755534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog38727.Pavir.Eb03727.1.p
PFAMsCRAL_TRIO,CRAL_TRIO_N
Max annot lvl35493|Streptophyta
Evalue1.86e-12
EggNOG OGsKOG1470@1|root,KOG1470@2759|Eukaryota,37REW@33090|Viridiplantae,3G7VC@35493|Streptophyta,3KXV2@4447|Liliopsida
DescriptionCRAL/TRIO domain
COG categoryI
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2596Gchil2596Gracilaria chilensis NLEC103_M9 malegenetig00004400_pilon 1754551..1755534 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2596.t1Gchil2596.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004400_pilon 1754551..1755534 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2596.t1.stop1Gchil2596.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004400_pilon 1754551..1754553 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2596.t1.CDS1Gchil2596.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1754551..1754765 -
Gchil2596.t1.CDS2Gchil2596.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004400_pilon 1754889..1755534 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2596.t1.exon1Gchil2596.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1754551..1754765 -
Gchil2596.t1.exon2Gchil2596.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004400_pilon 1754889..1755534 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2596.t1.intron1Gchil2596.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004400_pilon 1754766..1754888 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2596.t1.start1Gchil2596.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004400_pilon 1755532..1755534 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2596.t1 ID=Gchil2596.t1|Name=Gchil2596.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=287bp
MASYFSGFRTCRIVEDAPLEALPESEASALTALQARTKHTFSSPHNNLHP
EDPWRTLTQNQVDLLLLRFLRYNLLQVESSFTHVCKVAAWRTDECPWNFG
LELLQNRKAGVPILSDVIRGRDDEVLLFIPCRHYDKSIIDRKLQTTAIKA
FFESYLYATGGLKASSAVMLVDFSGLHLKQVDLTALKNSINIFLSYYPEV
LQKVILVNYPRWIHGTWKCVLPLLDARTVAKIVWVRDSTGLRSELRKYFD
HNVLPMWLDGNAKNGTMRLFSGTQLNPEECRAKLWA*
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spliced messenger RNA

>Gchil2596.t1 ID=Gchil2596.t1|Name=Gchil2596.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=861bp|location=Sequence derived from alignment at tig00004400_pilon:1754551..1755534- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCTTATTTTTCCGGCTTCCGCACCTGTAGAATCGTTGAGGACGC
CCCATTAGAAGCCCTTCCCGAAAGCGAAGCCTCCGCTCTCACTGCGCTTC
AAGCGCGTACCAAACACACATTCTCCTCACCGCACAACAACCTGCACCCC
GAAGATCCCTGGAGAACTCTCACTCAAAATCAAGTAGATTTGCTTTTGCT
TCGATTTCTGCGATATAATCTGCTGCAAGTCGAATCCTCATTTACGCACG
TATGCAAAGTGGCCGCCTGGCGCACGGACGAATGCCCATGGAACTTCGGT
TTGGAATTGCTGCAAAACCGAAAAGCAGGTGTTCCCATATTATCTGATGT
CATTCGCGGTCGTGATGATGAAGTGCTCCTCTTCATTCCATGTCGACACT
ACGACAAATCTATAATTGATCGTAAACTTCAAACCACAGCCATCAAGGCG
TTCTTCGAGAGCTATTTATATGCTACAGGTGGCTTGAAAGCATCTTCCGC
TGTCATGCTTGTCGACTTCTCCGGATTGCATTTGAAGCAAGTGGACCTTA
CTGCGTTGAAGAATTCTATCAATATATTCCTTTCTTATTACCCTGAGGTG
TTGCAAAAGGTAATACTCGTTAATTACCCACGTTGGATTCACGGAACATG
GAAATGTGTTTTGCCCTTGTTGGATGCCAGAACGGTTGCAAAGATAGTTT
GGGTGCGGGATAGTACCGGCTTAAGATCTGAATTGCGGAAATACTTTGAC
CACAATGTTCTTCCCATGTGGTTAGACGGCAATGCAAAGAATGGGACAAT
GCGCCTTTTCTCTGGGACGCAATTGAACCCGGAGGAATGTAGAGCAAAGC
TCTGGGCTTAA
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protein sequence of Gchil2596.t1

>Gchil2596.t1 ID=Gchil2596.t1|Name=Gchil2596.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=287bp
MASYFSGFRTCRIVEDAPLEALPESEASALTALQARTKHTFSSPHNNLHP
EDPWRTLTQNQVDLLLLRFLRYNLLQVESSFTHVCKVAAWRTDECPWNFG
LELLQNRKAGVPILSDVIRGRDDEVLLFIPCRHYDKSIIDRKLQTTAIKA
FFESYLYATGGLKASSAVMLVDFSGLHLKQVDLTALKNSINIFLSYYPEV
LQKVILVNYPRWIHGTWKCVLPLLDARTVAKIVWVRDSTGLRSELRKYFD
HNVLPMWLDGNAKNGTMRLFSGTQLNPEECRAKLWA*
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mRNA from alignment at tig00004400_pilon:1754551..1755534-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2596.t1 ID=Gchil2596.t1|Name=Gchil2596.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=984bp|location=Sequence derived from alignment at tig00004400_pilon:1754551..1755534- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTCTTATTTTTCCGGCTTCCGCACCTGTAGAATCGTTGAGGACGC
CCCATTAGAAGCCCTTCCCGAAAGCGAAGCCTCCGCTCTCACTGCGCTTC
AAGCGCGTACCAAACACACATTCTCCTCACCGCACAACAACCTGCACCCC
GAAGATCCCTGGAGAACTCTCACTCAAAATCAAGTAGATTTGCTTTTGCT
TCGATTTCTGCGATATAATCTGCTGCAAGTCGAATCCTCATTTACGCACG
TATGCAAAGTGGCCGCCTGGCGCACGGACGAATGCCCATGGAACTTCGGT
TTGGAATTGCTGCAAAACCGAAAAGCAGGTGTTCCCATATTATCTGATGT
CATTCGCGGTCGTGATGATGAAGTGCTCCTCTTCATTCCATGTCGACACT
ACGACAAATCTATAATTGATCGTAAACTTCAAACCACAGCCATCAAGGCG
TTCTTCGAGAGCTATTTATATGCTACAGGTGGCTTGAAAGCATCTTCCGC
TGTCATGCTTGTCGACTTCTCCGGATTGCATTTGAAGCAAGTGGACCTTA
CTGCGTTGAAGAATTCTATCAATATATTCCTTTCTTATTACCCTGAGGTG
TTGCAAAAGGTAATACTCGTTAATTACCCACGTTGGATTCACGGAAGTAA
GTTTATCACCACATCTTTTTCGCTGCGGTTGAACCAGCAGTGCAGACTCG
CATACGTGCATCACATCAGTAGTTTCTGACCGAACGACATGTTCCTTTCT
ATTGTTCCACCACATGTAGCATGGAAATGTGTTTTGCCCTTGTTGGATGC
CAGAACGGTTGCAAAGATAGTTTGGGTGCGGGATAGTACCGGCTTAAGAT
CTGAATTGCGGAAATACTTTGACCACAATGTTCTTCCCATGTGGTTAGAC
GGCAATGCAAAGAATGGGACAATGCGCCTTTTCTCTGGGACGCAATTGAA
CCCGGAGGAATGTAGAGCAAAGCTCTGGGCTTAA
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Coding sequence (CDS) from alignment at tig00004400_pilon:1754551..1755534-

>Gchil2596.t1 ID=Gchil2596.t1|Name=Gchil2596.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=861bp|location=Sequence derived from alignment at tig00004400_pilon:1754551..1755534- (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTCTTATTTTTCCGGCTTCCGCACCTGTAGAATCGTTGAGGACGC
CCCATTAGAAGCCCTTCCCGAAAGCGAAGCCTCCGCTCTCACTGCGCTTC
AAGCGCGTACCAAACACACATTCTCCTCACCGCACAACAACCTGCACCCC
GAAGATCCCTGGAGAACTCTCACTCAAAATCAAGTAGATTTGCTTTTGCT
TCGATTTCTGCGATATAATCTGCTGCAAGTCGAATCCTCATTTACGCACG
TATGCAAAGTGGCCGCCTGGCGCACGGACGAATGCCCATGGAACTTCGGT
TTGGAATTGCTGCAAAACCGAAAAGCAGGTGTTCCCATATTATCTGATGT
CATTCGCGGTCGTGATGATGAAGTGCTCCTCTTCATTCCATGTCGACACT
ACGACAAATCTATAATTGATCGTAAACTTCAAACCACAGCCATCAAGGCG
TTCTTCGAGAGCTATTTATATGCTACAGGTGGCTTGAAAGCATCTTCCGC
TGTCATGCTTGTCGACTTCTCCGGATTGCATTTGAAGCAAGTGGACCTTA
CTGCGTTGAAGAATTCTATCAATATATTCCTTTCTTATTACCCTGAGGTG
TTGCAAAAGGTAATACTCGTTAATTACCCACGTTGGATTCACGGAACATG
GAAATGTGTTTTGCCCTTGTTGGATGCCAGAACGGTTGCAAAGATAGTTT
GGGTGCGGGATAGTACCGGCTTAAGATCTGAATTGCGGAAATACTTTGAC
CACAATGTTCTTCCCATGTGGTTAGACGGCAATGCAAAGAATGGGACAAT
GCGCCTTTTCTCTGGGACGCAATTGAACCCGGAGGAATGTAGAGCAAAGC
TCTGGGCTTAA
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