Gchil9552.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil9552.t1
Unique NameGchil9552.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length580
Homology
BLAST of Gchil9552.t1 vs. uniprot
Match: A0A2V3IPP0_9FLOR (Voltage-dependent calcium channel subunit alpha-2/delta-4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPP0_9FLOR)

HSP 1 Score: 520 bits (1339), Expect = 3.230e-172
Identity = 266/507 (52.47%), Postives = 358/507 (70.61%), Query Frame = 0
Query:    2 SLISAIAALGRNDYVSVISM-GKTVEVL---GNSDKLERATSEVKEQLKQDVKRLKPSSGRPDTS-ALEEAFSILRRSKEQGSSSGCSKIIVLLIGNEPVCFEQCRLPPMT-CTCTSDLVDSIIREQESLGEN-VSIVTFTEGNNNNAERVARSFVCESSAPGAWRRVSSSESPESSLSAYTDIASLTQKSKEYTSEITKDFSGLGDVFTIAQPVYEAESVRLVGVVGVDITIAQVSKAVGGREIAESAINTQIGTENRNCEARNPDSCEMQTLRAQYGGVCADILVRSDQTWKCFRAGESLYMRLETALTWSEARLQCRSFGSGSDLAIVDSRGKNEIVAGISSLDGSWIGLRATQGENVQWVNGSEFVARSLGFSITNGDIQAEIDELHQQELVDACVSVDRRGISENWNIVPCDAKRLATCEVKENSENASVLCPTGSIFDRRRTEYEPINNLGCDTSGFPSCPAEEDEALKTANPFCEEKSETPRSEFDRICCGGRSDSGPRE 501
            +L+S +  L R+DYV+VI++ G+  EVL   G+   L +A    KE L Q V RL PSSG+P    A+E+AF IL+ S++Q  SS CS+IIV+L GN P CF++C     + CTCT+D+V ++  +Q  +GE  VSIV FTEG NN+A+R+ARS VC S A   W++V  ++S +S+LSAYTDI SLTQ S+EYTS+I  D  GLGD+FTIA+P+YE E+  LVGV GVDITI +V+  VGGR+ A + I  +I  E R+C  R PDSC  Q LRA+YGG+CAD+LV   ++WKC+RAG SL+ R E   +W EAR  C++ GSG+DLA++D+ GKNE+VA IS+ DGSWIGLRA Q + ++W++GS F  +   F   N D + +I+ LH++EL+DACV+VDRRG S NWNI PCD+KR+A CEVK  +EN S +CP  + FDRR T YEP++ + CD S    C  +E+ AL+ ANP C ++S   RSEFDR CCGGRSD+GP +
Sbjct:  284 ALVSELERLRRDDYVAVIAVSGENAEVLLSSGSPSILRKADESFKETLVQAVHRLPPSSGQPVMKEAIEKAFDILQESEKQQQSSLCSRIIVILAGNAPACFKECNKKSSSGCTCTADIVTAVQAKQARMGERKVSIVAFTEGMNNDAQRMARSIVCASDAASVWQQVQPNKSSDSALSAYTDIGSLTQTSREYTSDIYIDGFGLGDIFTIARPMYERETNALVGVSGVDITITEVADRVGGRDAARAVIEDKIRKERRSCSPRKPDSCAQQKLRARYGGICADVLVGEKRSWKCYRAGSSLFFRSEALTSWEEARANCQTLGSGADLAVLDNDGKNELVAAISAYDGSWIGLRAEQNKELEWISGSPFEKKGFSF---NFDYEIDINRLHEKELIDACVAVDRRGTSGNWNIGPCDSKRMAICEVKTTAENVSSICPQDNTFDRRTTVYEPVHRVDCDLSETVKCSEDEETALENANPLCPDRSSGGRSEFDRRCCGGRSDTGPTQ 787          
BLAST of Gchil9552.t1 vs. uniprot
Match: A0A2V3IPN2_9FLOR (Voltage-dependent calcium channel subunit alpha-2/delta-4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPN2_9FLOR)

HSP 1 Score: 514 bits (1323), Expect = 1.660e-170
Identity = 266/507 (52.47%), Postives = 350/507 (69.03%), Query Frame = 0
Query:    2 SLISAIAALGRNDYVSVISM-GKTVEVL---GNSDKLERATSEVKEQLKQDVKRLKPSSGRPDTS-ALEEAFSILRRSKEQGSSSGCSKIIVLLIGNEPVCFEQCRLPPMT-CTCTSDLVDSIIREQESLGEN-VSIVTFTEGNNNNAERVARSFVCESSAPGAWRRVSSSESPESSLSAYTDIASLTQKSKEYTSEITKDFSGLGDVFTIAQPVYEAESVRLVGVVGVDITIAQVSKAVGGREIAESAINTQIGTENRNCEARNPDSCEMQTLRAQYGGVCADILVRSDQTWKCFRAGESLYMRLETALTWSEARLQCRSFGSGSDLAIVDSRGKNEIVAGISSLDGSWIGLRATQGENVQWVNGSEFVARSLGFSITNGDIQAEIDELHQQELVDACVSVDRRGISENWNIVPCDAKRLATCEVKENSENASVLCPTGSIFDRRRTEYEPINNLGCDTSGFPSCPAEEDEALKTANPFCEEKSETPRSEFDRICCGGRSDSGPRE 501
            + +S +  L R+D+V+VI++ G   EVL   G+   L +A    KE L Q V+RL PS G+P    A+E+AF IL+ S+ Q  SS CS+IIV+L GN P CF+ C     + CTCT+++V+++  +Q  +G   VSIV+FTEG +N+A+RVARS VCES+A   W +V   ES +S+LSAYTDI SLTQ S+EYTS+I  D  GLGD+ TIA+PVYE E+  LVGV GVDITI +V+  VGG + A  AI  QI  E R+C  R PDSC  Q LRA+YGG+CAD+LV   + W+C+RAG SL+ R ET  +W +AR  CR+FGSG+DLA++D+ GKNE+VA IS+ DGSWIGLRA Q   ++W++GS F  +   F   N D + +I+ LH+ EL+ ACV+VDRRG S NWNI PCD+KR+A CEVK  +EN S +CP  +IFDRR T YEP++ + CD S    CP + D ALK ANP C E +   RSE DR CCGGRSD+GP +
Sbjct:  232 AFLSELERLQRDDFVAVIAVSGDKAEVLASSGSPSTLRQADESFKETLVQAVRRLSPSPGKPVMKEAIEKAFDILQESETQRRSSLCSRIIVVLAGNAPACFQDCNDQSASECTCTAEIVNAVRAKQNGMGNRRVSIVSFTEGKDNDAQRVARSIVCESAAASVWHQVEPDESSDSALSAYTDIGSLTQTSREYTSDIYIDGFGLGDMITIAKPVYERETNALVGVSGVDITITEVADRVGGSDAARDAIEDQIRKERRSCSPRKPDSCAQQKLRARYGGICADVLVGETRPWRCYRAGSSLFFRSETLESWEDARASCRTFGSGADLAVLDNDGKNELVAAISAYDGSWIGLRAEQNRELEWISGSPFEKKDFSF---NFDYEIDINRLHEGELIAACVTVDRRGTSGNWNIEPCDSKRMAICEVKTTAENVSSICPQDTIFDRRTTVYEPVHKVDCDLSETDRCPVDNDSALKNANPLCPEGNSRGRSESDRRCCGGRSDTGPTQ 735          
BLAST of Gchil9552.t1 vs. uniprot
Match: A0A2V3IZF3_9FLOR (Voltage-dependent calcium channel subunit alpha-2/delta-4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IZF3_9FLOR)

HSP 1 Score: 449 bits (1155), Expect = 3.420e-145
Identity = 251/528 (47.54%), Postives = 345/528 (65.34%), Query Frame = 0
Query:    2 SLISAIAALGRNDYVSVISMGKT-VEVLGNSDKLERATSEVKEQLKQDVKRLKPSSGRPD-TSALEEAFSILRRSKEQGSSSGCSKIIVLLIGNEPVCFEQCRLPPMT-CTCTSDLVDSIIREQESLGENVSIVTFTEGNNNNAERVARSFVCESSAPGAWRRVSSSESPESSLSAYTDIASLTQKSKEYTSEITKDFSGLGDVFTIAQPVYEAESVRLVGVVGVDITIAQVSKAVGGREIAESAINTQIGTENRNCEARNPDSCEMQTLRAQYGGVCADILVRSDQTWKCFRAGESLYMRLETALTWSEARLQCRSFGSGSDLAIVDSRGKNEIVAGISSLDGSWIGLRATQGENVQWVNGSEFVARSLGFSITNGDIQAEIDELHQQELVDACVSVDRRGISENWNIVPCDAKRLATCEVKENSENASVLCPTGSIFDRRRTEYEPINNLGCDTSGFPSCPAEEDEALKTANPFCEEKSETPRSEFDRICCGGRSDSGPREECKD--DGAPVAAIAGGVIGGLLAV 524
            +L SA+A L   DYVSVI+ G T V VLGN+  L +A S    +L+Q+V+ L  SSG P  T A  +AF IL RS+ +  +S C++ I LL  + P CFE CR      CTCT+ +V  I  +Q+ L   VSIV+FTEG++N+A+RVARS VCE+   G WR+VSS+ES ES+L   +DIASL+Q++ EYTS +  D SGLG++FTIA+P Y+A S  ++GVVGVD+TI +  + VG      S +  +    +R CE  +  S + Q+LR +Y GVCADIL    ++W C+R G SL++     L+W+EAR  CRS G+GSDLAI+D+ GKN++ A I+S DG+WIGLRATQG  +QWV+G+ +   S GF     D++ EI+ +H  E V+ C+SVDRRGI  NWNIVPCDAKR A CE++  S  A   C + +IFD R T + P+N     ++GF +C A +DEAL+ ANP C+EK++    +FDR+CCGGR+DS     C    + + V  IAG V+G L  V
Sbjct:  229 ALKSALATLDTGDYVSVIAFGDTSVTVLGNTRTLRKAESNFTSRLEQEVESLPQSSGFPMMTEAFTKAFEILSRSERESQTSNCARFIALLSKDAPKCFENCRQDSADECTCTNQIVSLIKSKQQDLRSKVSIVSFTEGDDNDAQRVARSIVCEAEGAGVWRQVSSTESAESALIPLSDIASLSQRNTEYTSGVYTDASGLGEMFTIARPAYDARSSVILGVVGVDVTIREAVEVVGNEGTVRSRV-AERHQRDRGCEQNDVTSGQRQSLRLRYEGVCADIL----RSWSCYRVGGSLFIPSNGTLSWNEARGYCRSLGNGSDLAILDNEGKNKMAAAITSYDGNWIGLRATQGNPLQWVSGTAWTTNSYGF-YKGIDVEKEIENIHNTENVNVCISVDRRGIKGNWNIVPCDAKRTAICELQWGSPAAVDHC-SSNIFDPRTTSHTPVNEDVESSNGF-NCEASDDEALQNANPICKEKTKDKLRDFDRLCCGGRADSSGPLTCDSTSESSNVGVIAGSVVGALAVV 748          
The following BLAST results are available for this feature:
BLAST of Gchil9552.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IPP0_9FLOR3.230e-17252.47Voltage-dependent calcium channel subunit alpha-2/... [more]
A0A2V3IPN2_9FLOR1.660e-17052.47Voltage-dependent calcium channel subunit alpha-2/... [more]
A0A2V3IZF3_9FLOR3.420e-14547.54Voltage-dependent calcium channel subunit alpha-2/... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001304C-type lectin-likeSMARTSM00034CLECT_2coord: 283..419
e-value: 3.7E-10
score: 49.8
IPR001304C-type lectin-likePFAMPF00059Lectin_Ccoord: 303..419
e-value: 1.0E-9
score: 39.0
IPR001304C-type lectin-likePROSITEPS50041C_TYPE_LECTIN_2coord: 292..419
score: 13.5684
IPR016186C-type lectin-like/link domain superfamilyGENE3D3.10.100.10coord: 281..428
e-value: 4.9E-17
score: 64.1
IPR036465von Willebrand factor A-like domain superfamilyGENE3D3.40.50.410von Willebrand factor, type A domaincoord: 1..148
e-value: 1.5E-7
score: 33.6
NoneNo IPR availablePANTHERPTHR10166VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATEDcoord: 9..234
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..509
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 536..579
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 510..535
NoneNo IPR availableCDDcd00037CLECTcoord: 297..420
e-value: 8.78851E-12
score: 60.3261
NoneNo IPR availableTMHMMTMhelixcoord: 513..535
IPR016187C-type lectin foldSUPERFAMILY56436C-type lectin-likecoord: 286..421

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004370_piloncontigtig00004370_pilon:4861825..4863564 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil9552.t1Gchil9552.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004370_pilon 4861825..4863564 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil9552.t1 ID=Gchil9552.t1|Name=Gchil9552.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=580bp
MSLISAIAALGRNDYVSVISMGKTVEVLGNSDKLERATSEVKEQLKQDVK
RLKPSSGRPDTSALEEAFSILRRSKEQGSSSGCSKIIVLLIGNEPVCFEQ
CRLPPMTCTCTSDLVDSIIREQESLGENVSIVTFTEGNNNNAERVARSFV
CESSAPGAWRRVSSSESPESSLSAYTDIASLTQKSKEYTSEITKDFSGLG
DVFTIAQPVYEAESVRLVGVVGVDITIAQVSKAVGGREIAESAINTQIGT
ENRNCEARNPDSCEMQTLRAQYGGVCADILVRSDQTWKCFRAGESLYMRL
ETALTWSEARLQCRSFGSGSDLAIVDSRGKNEIVAGISSLDGSWIGLRAT
QGENVQWVNGSEFVARSLGFSITNGDIQAEIDELHQQELVDACVSVDRRG
ISENWNIVPCDAKRLATCEVKENSENASVLCPTGSIFDRRRTEYEPINNL
GCDTSGFPSCPAEEDEALKTANPFCEEKSETPRSEFDRICCGGRSDSGPR
EECKDDGAPVAAIAGGVIGGLLAVAAVVLVVFLLFPRMKRCRASDSKASS
ASTPSARLNEITGTKIDIRPEDLHRLDMM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001304C-type_lectin-like
IPR016186C-type_lectin-like/link_sf
IPR036465vWFA_dom_sf
IPR016187CTDL_fold