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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Seed ortholog | 2850.Phatr49215 |
PFAMs | VWA_2 |
Max annot lvl | 2836|Bacillariophyta |
Evalue | 1.83e-06 |
EggNOG OGs | KOG2353@1|root,KOG2353@2759|Eukaryota,2XEN6@2836|Bacillariophyta |
Description | von Willebrand factor type A domain |
COG category | PT |
Relationships
This mRNA is a part of the following gene feature(s):
The following stop_codon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following start_codon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >Gchil9552.t1 ID=Gchil9552.t1|Name=Gchil9552.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=580bp MSLISAIAALGRNDYVSVISMGKTVEVLGNSDKLERATSEVKEQLKQDVK RLKPSSGRPDTSALEEAFSILRRSKEQGSSSGCSKIIVLLIGNEPVCFEQ CRLPPMTCTCTSDLVDSIIREQESLGENVSIVTFTEGNNNNAERVARSFV CESSAPGAWRRVSSSESPESSLSAYTDIASLTQKSKEYTSEITKDFSGLG DVFTIAQPVYEAESVRLVGVVGVDITIAQVSKAVGGREIAESAINTQIGT ENRNCEARNPDSCEMQTLRAQYGGVCADILVRSDQTWKCFRAGESLYMRL ETALTWSEARLQCRSFGSGSDLAIVDSRGKNEIVAGISSLDGSWIGLRAT QGENVQWVNGSEFVARSLGFSITNGDIQAEIDELHQQELVDACVSVDRRG ISENWNIVPCDAKRLATCEVKENSENASVLCPTGSIFDRRRTEYEPINNL GCDTSGFPSCPAEEDEALKTANPFCEEKSETPRSEFDRICCGGRSDSGPR EECKDDGAPVAAIAGGVIGGLLAVAAVVLVVFLLFPRMKRCRASDSKASS ASTPSARLNEITGTKIDIRPEDLHRLDMM* back to topspliced messenger RNA >Gchil9552.t1 ID=Gchil9552.t1|Name=Gchil9552.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1740bp|location=Sequence derived from alignment at tig00004370_pilon:4861825..4863564- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.
ATGTCATTAATTTCAGCAATTGCAGCTCTAGGTCGAAATGATTACGTATC TGTGATTTCGATGGGGAAAACCGTCGAAGTACTTGGAAACTCGGACAAAC TCGAACGTGCTACAAGTGAAGTCAAGGAACAGCTGAAGCAGGATGTTAAA AGATTAAAACCATCCAGCGGTCGACCAGACACATCTGCACTAGAAGAAGC CTTCAGTATTTTACGAAGATCTAAAGAACAAGGGAGCTCGAGTGGTTGCT CAAAGATTATAGTGTTGCTCATAGGAAATGAACCAGTTTGCTTTGAACAG TGCCGGTTACCGCCTATGACTTGCACATGTACATCTGACCTAGTTGATTC CATAATACGGGAGCAGGAAAGCTTAGGAGAAAATGTTTCTATCGTCACTT TCACGGAAGGGAACAACAATAATGCTGAACGTGTTGCACGTTCTTTCGTT TGCGAATCCTCTGCCCCCGGCGCATGGAGACGAGTGTCTTCCTCGGAGAG TCCGGAGTCTTCCTTGTCTGCGTATACTGACATTGCTTCGCTGACACAGA AAAGCAAGGAGTACACCTCTGAGATAACGAAGGACTTCTCAGGGTTGGGA GATGTATTCACAATCGCTCAGCCAGTTTATGAAGCGGAATCAGTTCGTCT TGTTGGAGTCGTTGGTGTCGATATTACCATCGCACAAGTTAGCAAAGCTG TTGGTGGTCGGGAAATAGCTGAGTCAGCCATAAACACTCAGATCGGAACC GAGAACAGAAATTGTGAGGCAAGGAATCCAGATTCGTGCGAAATGCAGAC ATTAAGAGCACAATACGGTGGTGTTTGCGCTGATATTCTTGTAAGAAGTG ATCAAACCTGGAAGTGCTTTCGAGCTGGGGAATCACTTTACATGAGACTA GAAACTGCTTTGACATGGTCTGAGGCCCGATTGCAGTGTAGAAGTTTCGG AAGTGGAAGCGACTTGGCGATTGTGGACAGTCGTGGAAAGAATGAAATTG TGGCCGGTATTAGTTCGCTTGACGGAAGTTGGATTGGATTAAGAGCCACG CAAGGTGAAAATGTTCAGTGGGTGAACGGATCTGAATTTGTGGCTCGAAG CCTGGGTTTTAGTATCACAAATGGCGACATTCAGGCGGAAATTGACGAGC TCCATCAACAGGAACTTGTCGACGCTTGTGTTTCTGTTGATCGTCGGGGT ATCAGTGAGAACTGGAACATCGTTCCGTGCGACGCGAAACGCTTGGCGAC ATGTGAGGTGAAGGAGAATTCAGAAAATGCGAGCGTGCTTTGTCCGACTG GCAGCATTTTTGACCGCAGAAGGACTGAATATGAACCTATCAATAATCTT GGTTGTGACACCTCTGGTTTTCCGTCATGCCCAGCAGAAGAAGATGAAGC CTTGAAGACGGCGAACCCGTTTTGTGAAGAAAAGTCAGAGACGCCAAGGA GTGAATTTGACCGAATCTGTTGCGGTGGAAGATCAGACAGTGGTCCTAGA GAGGAATGCAAGGATGATGGTGCCCCTGTCGCCGCGATTGCTGGAGGAGT CATTGGAGGTTTACTCGCCGTGGCTGCGGTTGTGCTCGTGGTCTTCTTGT TGTTTCCGAGGATGAAAAGATGTCGAGCTTCAGACTCTAAAGCTTCCTCT GCATCGACACCATCTGCAAGACTTAATGAAATCACTGGAACCAAAATTGA TATTCGGCCAGAAGACCTCCATAGACTGGACATGATGTGA back to topprotein sequence of Gchil9552.t1 >Gchil9552.t1 ID=Gchil9552.t1|Name=Gchil9552.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=580bp
MSLISAIAALGRNDYVSVISMGKTVEVLGNSDKLERATSEVKEQLKQDVK RLKPSSGRPDTSALEEAFSILRRSKEQGSSSGCSKIIVLLIGNEPVCFEQ CRLPPMTCTCTSDLVDSIIREQESLGENVSIVTFTEGNNNNAERVARSFV CESSAPGAWRRVSSSESPESSLSAYTDIASLTQKSKEYTSEITKDFSGLG DVFTIAQPVYEAESVRLVGVVGVDITIAQVSKAVGGREIAESAINTQIGT ENRNCEARNPDSCEMQTLRAQYGGVCADILVRSDQTWKCFRAGESLYMRL ETALTWSEARLQCRSFGSGSDLAIVDSRGKNEIVAGISSLDGSWIGLRAT QGENVQWVNGSEFVARSLGFSITNGDIQAEIDELHQQELVDACVSVDRRG ISENWNIVPCDAKRLATCEVKENSENASVLCPTGSIFDRRRTEYEPINNL GCDTSGFPSCPAEEDEALKTANPFCEEKSETPRSEFDRICCGGRSDSGPR EECKDDGAPVAAIAGGVIGGLLAVAAVVLVVFLLFPRMKRCRASDSKASS ASTPSARLNEITGTKIDIRPEDLHRLDMM* back to topmRNA from alignment at tig00004370_pilon:4861825..4863564- Legend: polypeptideCDSexonstart_codonstop_codon Hold the cursor over a type above to highlight its positions in the sequence below. >Gchil9552.t1 ID=Gchil9552.t1|Name=Gchil9552.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1740bp|location=Sequence derived from alignment at tig00004370_pilon:4861825..4863564- (Gracilaria chilensis NLEC103_M9 male) ATGTCATTAATTTCAGCAATTGCAGCTCTAGGTCGAAATGATTACGTATC
TGTGATTTCGATGGGGAAAACCGTCGAAGTACTTGGAAACTCGGACAAAC
TCGAACGTGCTACAAGTGAAGTCAAGGAACAGCTGAAGCAGGATGTTAAA
AGATTAAAACCATCCAGCGGTCGACCAGACACATCTGCACTAGAAGAAGC
CTTCAGTATTTTACGAAGATCTAAAGAACAAGGGAGCTCGAGTGGTTGCT
CAAAGATTATAGTGTTGCTCATAGGAAATGAACCAGTTTGCTTTGAACAG
TGCCGGTTACCGCCTATGACTTGCACATGTACATCTGACCTAGTTGATTC
CATAATACGGGAGCAGGAAAGCTTAGGAGAAAATGTTTCTATCGTCACTT
TCACGGAAGGGAACAACAATAATGCTGAACGTGTTGCACGTTCTTTCGTT
TGCGAATCCTCTGCCCCCGGCGCATGGAGACGAGTGTCTTCCTCGGAGAG
TCCGGAGTCTTCCTTGTCTGCGTATACTGACATTGCTTCGCTGACACAGA
AAAGCAAGGAGTACACCTCTGAGATAACGAAGGACTTCTCAGGGTTGGGA
GATGTATTCACAATCGCTCAGCCAGTTTATGAAGCGGAATCAGTTCGTCT
TGTTGGAGTCGTTGGTGTCGATATTACCATCGCACAAGTTAGCAAAGCTG
TTGGTGGTCGGGAAATAGCTGAGTCAGCCATAAACACTCAGATCGGAACC
GAGAACAGAAATTGTGAGGCAAGGAATCCAGATTCGTGCGAAATGCAGAC
ATTAAGAGCACAATACGGTGGTGTTTGCGCTGATATTCTTGTAAGAAGTG
ATCAAACCTGGAAGTGCTTTCGAGCTGGGGAATCACTTTACATGAGACTA
GAAACTGCTTTGACATGGTCTGAGGCCCGATTGCAGTGTAGAAGTTTCGG
AAGTGGAAGCGACTTGGCGATTGTGGACAGTCGTGGAAAGAATGAAATTG
TGGCCGGTATTAGTTCGCTTGACGGAAGTTGGATTGGATTAAGAGCCACG
CAAGGTGAAAATGTTCAGTGGGTGAACGGATCTGAATTTGTGGCTCGAAG
CCTGGGTTTTAGTATCACAAATGGCGACATTCAGGCGGAAATTGACGAGC
TCCATCAACAGGAACTTGTCGACGCTTGTGTTTCTGTTGATCGTCGGGGT
ATCAGTGAGAACTGGAACATCGTTCCGTGCGACGCGAAACGCTTGGCGAC
ATGTGAGGTGAAGGAGAATTCAGAAAATGCGAGCGTGCTTTGTCCGACTG
GCAGCATTTTTGACCGCAGAAGGACTGAATATGAACCTATCAATAATCTT
GGTTGTGACACCTCTGGTTTTCCGTCATGCCCAGCAGAAGAAGATGAAGC
CTTGAAGACGGCGAACCCGTTTTGTGAAGAAAAGTCAGAGACGCCAAGGA
GTGAATTTGACCGAATCTGTTGCGGTGGAAGATCAGACAGTGGTCCTAGA
GAGGAATGCAAGGATGATGGTGCCCCTGTCGCCGCGATTGCTGGAGGAGT
CATTGGAGGTTTACTCGCCGTGGCTGCGGTTGTGCTCGTGGTCTTCTTGT
TGTTTCCGAGGATGAAAAGATGTCGAGCTTCAGACTCTAAAGCTTCCTCT
GCATCGACACCATCTGCAAGACTTAATGAAATCACTGGAACCAAAATTGA
TATTCGGCCAGAAGACCTCCATAGACTGGACATGATGTGA back to topCoding sequence (CDS) from alignment at tig00004370_pilon:4861825..4863564- >Gchil9552.t1 ID=Gchil9552.t1|Name=Gchil9552.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1740bp|location=Sequence derived from alignment at tig00004370_pilon:4861825..4863564- (Gracilaria chilensis NLEC103_M9 male) ATGTCATTAATTTCAGCAATTGCAGCTCTAGGTCGAAATGATTACGTATC TGTGATTTCGATGGGGAAAACCGTCGAAGTACTTGGAAACTCGGACAAAC TCGAACGTGCTACAAGTGAAGTCAAGGAACAGCTGAAGCAGGATGTTAAA AGATTAAAACCATCCAGCGGTCGACCAGACACATCTGCACTAGAAGAAGC CTTCAGTATTTTACGAAGATCTAAAGAACAAGGGAGCTCGAGTGGTTGCT CAAAGATTATAGTGTTGCTCATAGGAAATGAACCAGTTTGCTTTGAACAG TGCCGGTTACCGCCTATGACTTGCACATGTACATCTGACCTAGTTGATTC CATAATACGGGAGCAGGAAAGCTTAGGAGAAAATGTTTCTATCGTCACTT TCACGGAAGGGAACAACAATAATGCTGAACGTGTTGCACGTTCTTTCGTT TGCGAATCCTCTGCCCCCGGCGCATGGAGACGAGTGTCTTCCTCGGAGAG TCCGGAGTCTTCCTTGTCTGCGTATACTGACATTGCTTCGCTGACACAGA AAAGCAAGGAGTACACCTCTGAGATAACGAAGGACTTCTCAGGGTTGGGA GATGTATTCACAATCGCTCAGCCAGTTTATGAAGCGGAATCAGTTCGTCT TGTTGGAGTCGTTGGTGTCGATATTACCATCGCACAAGTTAGCAAAGCTG TTGGTGGTCGGGAAATAGCTGAGTCAGCCATAAACACTCAGATCGGAACC GAGAACAGAAATTGTGAGGCAAGGAATCCAGATTCGTGCGAAATGCAGAC ATTAAGAGCACAATACGGTGGTGTTTGCGCTGATATTCTTGTAAGAAGTG ATCAAACCTGGAAGTGCTTTCGAGCTGGGGAATCACTTTACATGAGACTA GAAACTGCTTTGACATGGTCTGAGGCCCGATTGCAGTGTAGAAGTTTCGG AAGTGGAAGCGACTTGGCGATTGTGGACAGTCGTGGAAAGAATGAAATTG TGGCCGGTATTAGTTCGCTTGACGGAAGTTGGATTGGATTAAGAGCCACG CAAGGTGAAAATGTTCAGTGGGTGAACGGATCTGAATTTGTGGCTCGAAG CCTGGGTTTTAGTATCACAAATGGCGACATTCAGGCGGAAATTGACGAGC TCCATCAACAGGAACTTGTCGACGCTTGTGTTTCTGTTGATCGTCGGGGT ATCAGTGAGAACTGGAACATCGTTCCGTGCGACGCGAAACGCTTGGCGAC ATGTGAGGTGAAGGAGAATTCAGAAAATGCGAGCGTGCTTTGTCCGACTG GCAGCATTTTTGACCGCAGAAGGACTGAATATGAACCTATCAATAATCTT GGTTGTGACACCTCTGGTTTTCCGTCATGCCCAGCAGAAGAAGATGAAGC CTTGAAGACGGCGAACCCGTTTTGTGAAGAAAAGTCAGAGACGCCAAGGA GTGAATTTGACCGAATCTGTTGCGGTGGAAGATCAGACAGTGGTCCTAGA GAGGAATGCAAGGATGATGGTGCCCCTGTCGCCGCGATTGCTGGAGGAGT CATTGGAGGTTTACTCGCCGTGGCTGCGGTTGTGCTCGTGGTCTTCTTGT TGTTTCCGAGGATGAAAAGATGTCGAGCTTCAGACTCTAAAGCTTCCTCT GCATCGACACCATCTGCAAGACTTAATGAAATCACTGGAACCAAAATTGA TATTCGGCCAGAAGACCTCCATAGACTGGACATGATGTGA back to top
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