Gchil7323.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil7323.t1
Unique NameGchil7323.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length306
Homology
BLAST of Gchil7323.t1 vs. uniprot
Match: A0A2V3IS40_9FLOR (Pre-mRNA-splicing factor 18 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IS40_9FLOR)

HSP 1 Score: 205 bits (521), Expect = 6.490e-61
Identity = 132/310 (42.58%), Postives = 184/310 (59.35%), Query Frame = 0
Query:    1 MDPLSGLRKEIEKKRKSRSQETIEKWKSKFELEEEYVKCPSSHSPDEPPKSETITKRRKISIPGKEKDDFVLKQE----DVSTIFPNEIAKTSDERNPGTGHRTHFTEEKAVLD---NPARIDNSQTVQQTAVEEEVLDQDMKLAKNEILPLQSIPNDKDLPKKDYVIKNINSLMSAWEAEISDLEADGKTKGKRKTMQKMYEQTKKWLRPLKKLLRKQKLERIILNALEDIFEAIESKNYTRANSLYLERLAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQTRKYIQAVKRLITVAERNIP 303
            MDPL+ L+K IE+K+     ++ +KW+S+ E+EEE  +       +   K +   KR+KI  P   +    + QE    D      + I +T  +    T H T    E A  D   +  +  N   ++       +  +D +  K+E +            ++D V + I   M  W  EI ++ A+ + K K + M   +EQTK WL+PL+KLLRK+KL++ IL+AL+DIF+A E + Y +AN LYLERLAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDE+TRKYIQ +KRL+TVA+R+ P
Sbjct:    1 MDPLAKLKKVIEEKKACPGNKS-KKWRSRQEIEEESERIYKKREAELKEK-QNAKKRQKIGPPPPRRTSPEVLQENAPSDGDENRQDSIPRTDSKNLASTDHSTGQDGETATEDVTGSAEKPQNEGEIETHPNRSPISKEDKEKQKDETIKTC---------REDQVHEQIQKYMRWWRTEIQEMAAEDRRKSKGRQMVNTFEQTKTWLKPLEKLLRKRKLQKNILSALKDIFDAAEEREYVKANRLYLERLAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEKTRKYIQGIKRLLTVAQRHFP 299          
BLAST of Gchil7323.t1 vs. uniprot
Match: UPI001E1DB440 (pre-mRNA-splicing factor 18-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DB440)

HSP 1 Score: 176 bits (446), Expect = 9.830e-49
Identity = 89/155 (57.42%), Postives = 115/155 (74.19%), Query Frame = 0
Query:  151 DKDLPK--KDYVIKNINSLMSAWEAEISDLEADGKTKGKRKTMQKMYEQTKKWLRPLKKLLRKQKLERIILNALEDIFEAIESKNYTRANSLYLERLAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQTRKYIQAVKRLITVAERNIP 303
            D+D P   +DYV + +   +  WE ++  +  + +   + +T     EQTK+WL+PL K LRKQ+L   IL AL +IFEA+E + Y RANS Y E+LAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDE++RKYIQ +KRL+T+A+R+ P
Sbjct:  233 DEDRPSCPEDYVYRQMRRWVRMWEEDVLAMPPESRRSNQGRTAAATLEQTKEWLKPLSKQLRKQRLAPNILRALVNIFEAVEEREYVRANSYYYEQLAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEKSRKYIQGIKRLVTLAQRHFP 387          
BLAST of Gchil7323.t1 vs. uniprot
Match: R7QIS3_CHOCR (Pre-mRNA-splicing factor 18 n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIS3_CHOCR)

HSP 1 Score: 175 bits (444), Expect = 1.240e-48
Identity = 88/148 (59.46%), Postives = 112/148 (75.68%), Query Frame = 0
Query:  156 KKDYVIKNINSLMSAWEAEISDLEADGKTKGKRKTMQKMYEQTKKWLRPLKKLLRKQKLERIILNALEDIFEAIESKNYTRANSLYLERLAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQTRKYIQAVKRLITVAERNIP 303
            K+DYV   +   M  W +EI  +  + +   K +++   YE+TK WL+PL +LLRK+KL + IL+ L+ IFEA   + Y RANS+YLE+LAIG APWPMGATMVGIHARAAREKIGEDKIAHVMND++ RKYIQ VKRL+TVA+R+ P
Sbjct:  222 KEDYVYLEMRKYMGLWASEIESISKEERRTTKGRSLVVTYEETKDWLKPLYRLLRKRKLPKKILDPLKGIFEAAAEREYIRANSIYLEQLAIGKAPWPMGATMVGIHARAAREKIGEDKIAHVMNDDRARKYIQGVKRLLTVAQRHFP 369          
BLAST of Gchil7323.t1 vs. uniprot
Match: A0A7S2ZAH2_9RHOD (Pre-mRNA-splicing factor 18 n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZAH2_9RHOD)

HSP 1 Score: 159 bits (403), Expect = 7.390e-43
Identity = 92/184 (50.00%), Postives = 126/184 (68.48%), Query Frame = 0
Query:  131 LDQDMKLAKNEILP-------LQSIPNDKDLPK--KDYVIKNINSLMSAWEAEISDLEADGKTKGKRKTMQKMYEQTKKWLRPLKKLLRKQKLERIILNALEDIFEAIESKNYTRANSLYLERLAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQTRKYIQAVKRLITVAERNIPAL 305
            +D+ M L ++++ P       L+S     + PK  +DYV   IN LM+ W+  + +  AD K   K +     YEQ+K++L PL+K L++++L   +L+AL+ IF+ +E + Y +AN +YL +LAIGNAPWPMGATMVGIHAR AREKIGE KIAHVMNDEQTRKYIQAVKRLIT+ +   P +
Sbjct:  161 IDEGMYLKEDDVPPRITQTHELESRDEPVENPKTDEDYVRGQINKLMAKWKEVLDNKPADEKRTQKGRKALATYEQSKEYLEPLEKKLKRRELGLNVLHALKQIFQFVEEREYVQANDVYL-KLAIGNAPWPMGATMVGIHARTAREKIGEGKIAHVMNDEQTRKYIQAVKRLITMTQSWSPTV 343          
BLAST of Gchil7323.t1 vs. uniprot
Match: A0A7S1XAV3_9RHOD (Pre-mRNA-splicing factor 18 n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XAV3_9RHOD)

HSP 1 Score: 153 bits (387), Expect = 2.540e-40
Identity = 84/161 (52.17%), Postives = 111/161 (68.94%), Query Frame = 0
Query:  145 LQSIPNDKDLPKKDYVIKNINSLMSAWEAEISDLEADGKTKGKRKTMQKMYEQTKKWLRPLKKLLRKQKLERIILNALEDIFEAIESKNYTRANSLYLERLAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQTRKYIQAVKRLITVAERNIPAL 305
            LQ++  ++    +D+V + I  LM  WE E+    A+ K   K K     +EQTK+++RPL+ LL ++ L   IL  +  +F+ + ++ Y +AN  YL RLAIGNAPWPMGATMVGIHAR AREKIGE KIAH+MNDEQTRKYIQA KRLIT+A+R  P +
Sbjct:  203 LQNLGMEETDSDEDFVARQIRRLMRMWENELEARSAEEKRTAKGKAALATFEQTKEYVRPLETLLAQKTLNPNILKPMRKMFDFMTAREYVKANDEYL-RLAIGNAPWPMGATMVGIHARTAREKIGEGKIAHIMNDEQTRKYIQACKRLITMAQRWWPTV 362          
BLAST of Gchil7323.t1 vs. uniprot
Match: M2XS56_GALSU (Pre-mRNA-splicing factor 18 n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XS56_GALSU)

HSP 1 Score: 151 bits (381), Expect = 7.130e-40
Identity = 87/168 (51.79%), Postives = 117/168 (69.64%), Query Frame = 0
Query:  139 KNEILPLQSIPNDKDLPKKDYVIKNINSLMSAWEAEISDLEADGK-TKGKRKTMQKMYEQTKKWLRPLKKLLRKQKLERIILNALEDIFEAIESKNYTRANSLYLERLAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQTRKYIQAVKRLITVAERNIPAL 305
            K EI   +  P     P+ +Y  + +  L+  W+AE+  L+ + K T   RKT+   +EQTK++L+PL + L+KQ+L++ IL +LE I   +E + Y  AN  YL RLAIGNAPWP+GATMVGIHAR AREKI E KIAHVMNDE+TRKYIQAVKRLIT++++  P +
Sbjct:  154 KEEIYAAEEGPEFFKTPE-EYCFRYMRRLLKMWKAEVEQLDEETKRTSLGRKTLA-TFEQTKEYLKPLFRKLKKQQLDKSILTSLEKILRYVEQREYVLANDEYL-RLAIGNAPWPVGATMVGIHARTAREKISEGKIAHVMNDEETRKYIQAVKRLITLSQKWYPTV 318          
BLAST of Gchil7323.t1 vs. uniprot
Match: D2V2Q2_NAEGR (Pre-mRNA-splicing factor 18 n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2V2Q2_NAEGR)

HSP 1 Score: 131 bits (329), Expect = 2.640e-34
Identity = 67/138 (48.55%), Postives = 96/138 (69.57%), Query Frame = 0
Query:  168 MSAWEAEISDLEADGKTKGKRKTMQKMYEQTKKWLRPLKKLLRKQKLERIILNALEDIFEAIESKNYTRANSLYLERLAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQTRKYIQAVKRLITVAERNIPAL 305
            M  W  ++ DL    K   K K    +Y+QTK +++PL KLL+K++L   I+ +LE I   +  K Y +AN +Y+E LAIGN PWP+G TMVGIHAR ARE+IG DKI H++NDE  R+Y+Q+VKRL+T+A++  P++
Sbjct:    1 MKEWRYKLDDLPEHVKKSAKGKHDATIYKQTKSYIKPLFKLLKKRQLADEIVQSLEPICSFMAEKEYVKANDVYME-LAIGNQPWPIGVTMVGIHARTARERIGSDKIKHILNDEDQRRYVQSVKRLMTLAQQLYPSV 137          
BLAST of Gchil7323.t1 vs. uniprot
Match: A0A5J4YGM4_PORPP (Pre-mRNA-splicing factor 18 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YGM4_PORPP)

HSP 1 Score: 136 bits (342), Expect = 7.230e-34
Identity = 76/156 (48.72%), Postives = 104/156 (66.67%), Query Frame = 0
Query:  156 KKDYVIKNINSLMSAWEAEISDLEADGKTKGKRKTMQKMYE------QTKKWLRPLKKLLRKQKLERIILNALEDIFEAIESKNYTRANSLYLERLAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQTRKYIQAVKRLITVAERNIPAL 305
            ++ +V+  ++ L+S W A+I D  A   T    K   K  +      QT+++L P  K L  +KL   +L  L  IFE ++ + Y +AN +YL RLAIGNAPWP+GAT VGIH+RAAREKIGE+ +AHVMNDEQTRK++QAVKRLIT A++  P +
Sbjct:  196 RETFVLAWMHKLLSLWVADIRDHAAPTATSAPSKVSYKERQAHDTLVQTREYLEPFIKRLEARKLAESMLEFLFRIFEQVQQREYVQANDVYL-RLAIGNAPWPVGATQVGIHSRAAREKIGEENVAHVMNDEQTRKFVQAVKRLITRAQKYFPTV 350          
BLAST of Gchil7323.t1 vs. uniprot
Match: A0A5J4YHG1_PORPP (Pre-mRNA-splicing factor 18 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YHG1_PORPP)

HSP 1 Score: 136 bits (342), Expect = 4.290e-32
Identity = 76/156 (48.72%), Postives = 104/156 (66.67%), Query Frame = 0
Query:  156 KKDYVIKNINSLMSAWEAEISDLEADGKTKGKRKTMQKMYE------QTKKWLRPLKKLLRKQKLERIILNALEDIFEAIESKNYTRANSLYLERLAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQTRKYIQAVKRLITVAERNIPAL 305
            ++ +V+  ++ L+S W A+I D  A   T    K   K  +      QT+++L P  K L  +KL   +L  L  IFE ++ + Y +AN +YL RLAIGNAPWP+GAT VGIH+RAAREKIGE+ +AHVMNDEQTRK++QAVKRLIT A++  P +
Sbjct: 1118 RETFVLAWMHKLLSLWVADIRDHAAPTATSAPSKVSYKERQAHDTLVQTREYLEPFIKRLEARKLAESMLEFLFRIFEQVQQREYVQANDVYL-RLAIGNAPWPVGATQVGIHSRAAREKIGEENVAHVMNDEQTRKFVQAVKRLITRAQKYFPTV 1272          
BLAST of Gchil7323.t1 vs. uniprot
Match: A0A6A5AZ96_NAEFO (Pre-mRNA-splicing factor 18 n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5AZ96_NAEFO)

HSP 1 Score: 129 bits (324), Expect = 3.970e-31
Identity = 64/148 (43.24%), Postives = 102/148 (68.92%), Query Frame = 0
Query:  158 DYVIKNINSLMSAWEAEISDLEADGKTKGKRKTMQKMYEQTKKWLRPLKKLLRKQKLERIILNALEDIFEAIESKNYTRANSLYLERLAIGNAPWPMGATMVGIHARAAREKIGEDKIAHVMNDEQTRKYIQAVKRLITVAERNIPAL 305
            ++V++ +  LM  W+  + +L    K   + K    +++QTK +++PL KLL+K++L   IL  LE I   +  + Y +AN +Y+E LAIG+ PWP+G TMVGIHAR ARE+IG DKI H++NDE+ R+Y+Q+VKRL+++A++  P +
Sbjct:  222 EFVLRVLKRLMKEWQYSLDELPEHVKKSSQGKRDATIFKQTKTYIKPLFKLLKKKQLSDEILKFLEPICTYMADREYVKANDVYME-LAIGDQPWPIGVTMVGIHARTARERIGSDKIKHILNDEEQRRYVQSVKRLLSLAQKLYPTV 368          
The following BLAST results are available for this feature:
BLAST of Gchil7323.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IS40_9FLOR6.490e-6142.58Pre-mRNA-splicing factor 18 n=1 Tax=Gracilariopsis... [more]
UPI001E1DB4409.830e-4957.42pre-mRNA-splicing factor 18-like n=1 Tax=Mercenari... [more]
R7QIS3_CHOCR1.240e-4859.46Pre-mRNA-splicing factor 18 n=1 Tax=Chondrus crisp... [more]
A0A7S2ZAH2_9RHOD7.390e-4350.00Pre-mRNA-splicing factor 18 n=1 Tax=Rhodosorus mar... [more]
A0A7S1XAV3_9RHOD2.540e-4052.17Pre-mRNA-splicing factor 18 n=1 Tax=Compsopogon ca... [more]
M2XS56_GALSU7.130e-4051.79Pre-mRNA-splicing factor 18 n=1 Tax=Galdieria sulp... [more]
D2V2Q2_NAEGR2.640e-3448.55Pre-mRNA-splicing factor 18 n=1 Tax=Naegleria grub... [more]
A0A5J4YGM4_PORPP7.230e-3448.72Pre-mRNA-splicing factor 18 n=1 Tax=Porphyridium p... [more]
A0A5J4YHG1_PORPP4.290e-3248.72Pre-mRNA-splicing factor 18 n=1 Tax=Porphyridium p... [more]
A0A6A5AZ96_NAEFO3.970e-3143.24Pre-mRNA-splicing factor 18 n=2 Tax=Naegleria TaxI... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 161..181
NoneNo IPR availableGENE3D1.20.940.10Functional domain of the splicing factor Prp18coord: 120..304
e-value: 4.2E-47
score: 162.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..67
NoneNo IPR availablePANTHERPTHR13007:SF19PRE-MRNA-SPLICING FACTOR 18coord: 118..304
NoneNo IPR availableSUPERFAMILY47938Functional domain of the splicing factor Prp18coord: 151..303
IPR004098Prp18PFAMPF02840Prp18coord: 164..303
e-value: 1.2E-46
score: 158.4
IPR039979Pre-mRNA-splicing factor 18PANTHERPTHR13007PRE-MRNA SPLICING FACTOR-RELATEDcoord: 118..304

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:208569..209486 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7323.t1Gchil7323.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00000007_pilon 208569..209486 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil7323.t1 ID=Gchil7323.t1|Name=Gchil7323.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=306bp
MDPLSGLRKEIEKKRKSRSQETIEKWKSKFELEEEYVKCPSSHSPDEPPK
SETITKRRKISIPGKEKDDFVLKQEDVSTIFPNEIAKTSDERNPGTGHRT
HFTEEKAVLDNPARIDNSQTVQQTAVEEEVLDQDMKLAKNEILPLQSIPN
DKDLPKKDYVIKNINSLMSAWEAEISDLEADGKTKGKRKTMQKMYEQTKK
WLRPLKKLLRKQKLERIILNALEDIFEAIESKNYTRANSLYLERLAIGNA
PWPMGATMVGIHARAAREKIGEDKIAHVMNDEQTRKYIQAVKRLITVAER
NIPAL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004098Prp18
IPR039979PRPF18