Gchil7323.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil7323.t1
Unique NameGchil7323.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length306
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000007_piloncontigtig00000007_pilon:208569..209486 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703018.1
Preferred namePRPF18
PFAMsPRP4,Prp18
Max annot lvl2759|Eukaryota
KEGG koko:K10738,ko:K12817,ko:K20792
KEGG Pathwayko03040,map03040
GOsGO:0000350,GO:0000375,GO:0000377,GO:0000393,GO:0000398,GO:0000956,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005682,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008298,GO:0008380,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031323,GO:0031324,GO:0032268,GO:0032269,GO:0032991,GO:0033036,GO:0034622,GO:0034641,GO:0034655,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051179,GO:0051246,GO:0051248,GO:0051641,GO:0060255,GO:0065003,GO:0065007,GO:0070727,GO:0071020,GO:0071021,GO:0071025,GO:0071027,GO:0071028,GO:0071030,GO:0071033,GO:0071048,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901361,GO:1901575,GO:1990904
Evalue2.42e-40
EggNOG OGsKOG2808@1|root,KOG2808@2759|Eukaryota
EC3.6.4.12
Descriptionnuclear retention of unspliced pre-mRNA at the site of transcription
COG categoryS
BRITEko00000,ko00001,ko01000,ko03032,ko03036,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil7323Gchil7323Gracilaria chilensis NLEC103_M9 malegenetig00000007_pilon 208569..209486 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7323.t1.stop1Gchil7323.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000007_pilon 208569..208571 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7323.t1.CDS1Gchil7323.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000007_pilon 208569..209486 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7323.t1.exon1Gchil7323.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000007_pilon 208569..209486 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7323.t1.start1Gchil7323.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000007_pilon 209484..209486 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil7323.t1Gchil7323.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000007_pilon 208569..209486 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil7323.t1 ID=Gchil7323.t1|Name=Gchil7323.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=306bp
MDPLSGLRKEIEKKRKSRSQETIEKWKSKFELEEEYVKCPSSHSPDEPPK
SETITKRRKISIPGKEKDDFVLKQEDVSTIFPNEIAKTSDERNPGTGHRT
HFTEEKAVLDNPARIDNSQTVQQTAVEEEVLDQDMKLAKNEILPLQSIPN
DKDLPKKDYVIKNINSLMSAWEAEISDLEADGKTKGKRKTMQKMYEQTKK
WLRPLKKLLRKQKLERIILNALEDIFEAIESKNYTRANSLYLERLAIGNA
PWPMGATMVGIHARAAREKIGEDKIAHVMNDEQTRKYIQAVKRLITVAER
NIPAL*
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spliced messenger RNA

>Gchil7323.t1 ID=Gchil7323.t1|Name=Gchil7323.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=918bp|location=Sequence derived from alignment at tig00000007_pilon:208569..209486- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCCACTATCTGGTTTAAGGAAAGAAATAGAAAAGAAAAGAAAGTC
TCGTTCTCAGGAAACCATTGAGAAATGGAAATCAAAATTTGAATTGGAAG
AAGAATATGTAAAGTGTCCAAGTTCACACTCACCTGATGAACCCCCAAAA
TCTGAAACAATCACAAAACGAAGGAAGATTAGCATTCCCGGGAAGGAAAA
AGATGACTTCGTTCTGAAGCAGGAAGACGTCTCAACCATTTTTCCCAATG
AAATTGCCAAGACTAGCGATGAGCGAAACCCAGGCACTGGTCATCGTACG
CATTTCACTGAAGAAAAAGCAGTTCTTGACAATCCTGCCAGGATAGACAA
TTCTCAAACAGTGCAACAAACTGCTGTCGAAGAGGAGGTCCTAGATCAGG
ATATGAAGTTAGCCAAAAACGAAATTCTTCCGCTCCAGAGTATTCCAAAC
GACAAGGACCTTCCGAAAAAAGATTACGTCATAAAAAACATTAACAGCCT
AATGAGTGCTTGGGAAGCAGAAATAAGTGACTTGGAAGCAGATGGAAAGA
CCAAAGGCAAGCGTAAAACAATGCAAAAAATGTATGAGCAAACTAAAAAG
TGGTTGAGACCACTAAAAAAACTTTTAAGAAAGCAAAAGCTAGAACGAAT
CATTTTAAATGCTCTCGAAGATATCTTTGAAGCTATAGAATCGAAGAATT
ACACAAGAGCAAATAGTCTCTATCTAGAACGACTTGCAATAGGAAATGCT
CCATGGCCTATGGGAGCTACTATGGTTGGAATACATGCCCGTGCAGCAAG
AGAAAAGATTGGAGAAGATAAAATAGCTCACGTTATGAATGACGAGCAAA
CTAGGAAGTACATCCAAGCTGTCAAACGACTCATAACAGTTGCAGAACGA
AACATCCCTGCACTTTAA
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protein sequence of Gchil7323.t1

>Gchil7323.t1 ID=Gchil7323.t1|Name=Gchil7323.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=306bp
MDPLSGLRKEIEKKRKSRSQETIEKWKSKFELEEEYVKCPSSHSPDEPPK
SETITKRRKISIPGKEKDDFVLKQEDVSTIFPNEIAKTSDERNPGTGHRT
HFTEEKAVLDNPARIDNSQTVQQTAVEEEVLDQDMKLAKNEILPLQSIPN
DKDLPKKDYVIKNINSLMSAWEAEISDLEADGKTKGKRKTMQKMYEQTKK
WLRPLKKLLRKQKLERIILNALEDIFEAIESKNYTRANSLYLERLAIGNA
PWPMGATMVGIHARAAREKIGEDKIAHVMNDEQTRKYIQAVKRLITVAER
NIPAL*
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mRNA from alignment at tig00000007_pilon:208569..209486-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil7323.t1 ID=Gchil7323.t1|Name=Gchil7323.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=918bp|location=Sequence derived from alignment at tig00000007_pilon:208569..209486- (Gracilaria chilensis NLEC103_M9 male)
ATGGATCCACTATCTGGTTTAAGGAAAGAAATAGAAAAGAAAAGAAAGTC
TCGTTCTCAGGAAACCATTGAGAAATGGAAATCAAAATTTGAATTGGAAG
AAGAATATGTAAAGTGTCCAAGTTCACACTCACCTGATGAACCCCCAAAA
TCTGAAACAATCACAAAACGAAGGAAGATTAGCATTCCCGGGAAGGAAAA
AGATGACTTCGTTCTGAAGCAGGAAGACGTCTCAACCATTTTTCCCAATG
AAATTGCCAAGACTAGCGATGAGCGAAACCCAGGCACTGGTCATCGTACG
CATTTCACTGAAGAAAAAGCAGTTCTTGACAATCCTGCCAGGATAGACAA
TTCTCAAACAGTGCAACAAACTGCTGTCGAAGAGGAGGTCCTAGATCAGG
ATATGAAGTTAGCCAAAAACGAAATTCTTCCGCTCCAGAGTATTCCAAAC
GACAAGGACCTTCCGAAAAAAGATTACGTCATAAAAAACATTAACAGCCT
AATGAGTGCTTGGGAAGCAGAAATAAGTGACTTGGAAGCAGATGGAAAGA
CCAAAGGCAAGCGTAAAACAATGCAAAAAATGTATGAGCAAACTAAAAAG
TGGTTGAGACCACTAAAAAAACTTTTAAGAAAGCAAAAGCTAGAACGAAT
CATTTTAAATGCTCTCGAAGATATCTTTGAAGCTATAGAATCGAAGAATT
ACACAAGAGCAAATAGTCTCTATCTAGAACGACTTGCAATAGGAAATGCT
CCATGGCCTATGGGAGCTACTATGGTTGGAATACATGCCCGTGCAGCAAG
AGAAAAGATTGGAGAAGATAAAATAGCTCACGTTATGAATGACGAGCAAA
CTAGGAAGTACATCCAAGCTGTCAAACGACTCATAACAGTTGCAGAACGA
AACATCCCTGCACTTTAA
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Coding sequence (CDS) from alignment at tig00000007_pilon:208569..209486-

>Gchil7323.t1 ID=Gchil7323.t1|Name=Gchil7323.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=918bp|location=Sequence derived from alignment at tig00000007_pilon:208569..209486- (Gracilaria chilensis NLEC103_M9 male)
ATGGATCCACTATCTGGTTTAAGGAAAGAAATAGAAAAGAAAAGAAAGTC
TCGTTCTCAGGAAACCATTGAGAAATGGAAATCAAAATTTGAATTGGAAG
AAGAATATGTAAAGTGTCCAAGTTCACACTCACCTGATGAACCCCCAAAA
TCTGAAACAATCACAAAACGAAGGAAGATTAGCATTCCCGGGAAGGAAAA
AGATGACTTCGTTCTGAAGCAGGAAGACGTCTCAACCATTTTTCCCAATG
AAATTGCCAAGACTAGCGATGAGCGAAACCCAGGCACTGGTCATCGTACG
CATTTCACTGAAGAAAAAGCAGTTCTTGACAATCCTGCCAGGATAGACAA
TTCTCAAACAGTGCAACAAACTGCTGTCGAAGAGGAGGTCCTAGATCAGG
ATATGAAGTTAGCCAAAAACGAAATTCTTCCGCTCCAGAGTATTCCAAAC
GACAAGGACCTTCCGAAAAAAGATTACGTCATAAAAAACATTAACAGCCT
AATGAGTGCTTGGGAAGCAGAAATAAGTGACTTGGAAGCAGATGGAAAGA
CCAAAGGCAAGCGTAAAACAATGCAAAAAATGTATGAGCAAACTAAAAAG
TGGTTGAGACCACTAAAAAAACTTTTAAGAAAGCAAAAGCTAGAACGAAT
CATTTTAAATGCTCTCGAAGATATCTTTGAAGCTATAGAATCGAAGAATT
ACACAAGAGCAAATAGTCTCTATCTAGAACGACTTGCAATAGGAAATGCT
CCATGGCCTATGGGAGCTACTATGGTTGGAATACATGCCCGTGCAGCAAG
AGAAAAGATTGGAGAAGATAAAATAGCTCACGTTATGAATGACGAGCAAA
CTAGGAAGTACATCCAAGCTGTCAAACGACTCATAACAGTTGCAGAACGA
AACATCCCTGCACTTTAA
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