Gchil5437.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGchil5437.t1
Unique NameGchil5437.t1
Typepolypeptide
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length115
Homology
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BLAST of Gchil5437.t1 vs. uniprot
Match: A0A2V3IMH8_9FLOR (Chromo domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IMH8_9FLOR)

HSP 1 Score: 83.2 bits (204), Expect = 3.800e-17
Identity = 35/70 (50.00%), Postives = 48/70 (68.57%), Query Frame = 0 
Query:   10 VYPQEFVIDRIVRHIYTPEGEVRYEVRWYGFSPDEDTVEPIEHLPRSKVLSYHRRARVTLPPNLDLAQVG 79
            VYP++FVID IV H Y P  E+   VRW+ + P  DT EP++ LP+SK++ YHRR +  +P N+D A VG
Sbjct:  172 VYPKKFVIDHIVGHRYKPTREIECRVRWFSYPPSADTDEPVDRLPQSKIVQYHRREKTGVPANIDNALVG 241
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BLAST of Gchil5437.t1 vs. uniprot
Match: A0A2V3IM99_9FLOR (Chromo domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IM99_9FLOR)

HSP 1 Score: 71.2 bits (173), Expect = 2.390e-12
Identity = 33/67 (49.25%), Postives = 48/67 (71.64%), Query Frame = 0 
Query:   13 QEFVIDRIVRHIYTPEGEVRYEVRWYGFSPDEDTVEPIEHLPRSKVLSYHRRARVTLPPNLDLAQVG 79
            +E+VI+RIV H    +  +  +VRWYG++P  DT+EPI +LPR  VLSY +RA + +P N+D A+VG
Sbjct:  236 REYVIERIVFHGRDADNCLLCKVRWYGYAPSSDTLEPIGNLPRPHVLSYCKRANLAIPDNIDDARVG 302
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BLAST of Gchil5437.t1 vs. uniprot
Match: A0A2V3ITV0_9FLOR (DNA (Cytosine-5)-methyltransferase CMT2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ITV0_9FLOR)

HSP 1 Score: 61.6 bits (148), Expect = 1.770e-9
Identity = 33/71 (46.48%), Postives = 45/71 (63.38%), Query Frame = 0 
Query:   10 VYPQEFVIDRIVRHIYTPEG-EVRYEVRWYGFSPDEDTVEPIEHLPRSKVLSYHRRARVTLPPNLDLAQVG 79
            V   E+VI  IV   +  +G +++Y VRW G+ P+ D   PIE+LPRS V+ YHRR ++ LP NL  A VG
Sbjct:   82 VEDSEYVIACIVDKAFHEDGPKLQYRVRWCGYPPNVDAWYPIENLPRSHVVRYHRRKKLPLPANLVDALVG 152
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BLAST of Gchil5437.t1 vs. uniprot
Match: R7QIA9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QIA9_CHOCR)

HSP 1 Score: 63.5 bits (153), Expect = 2.070e-9
Identity = 26/67 (38.81%), Postives = 46/67 (68.66%), Query Frame = 0 
Query:   13 QEFVIDRIVRHIYTPEGEVRYEVRWYGFSPDEDTVEPIEHLPRSKVLSYHRRARVTLPPNLDLAQVG 79
            +E+V+D +V H Y  +G++ + VR YG++P++DT EPI HL R+ V+ Y +R  + +P ++  A+ G
Sbjct:  425 EEYVVDHVVAHRYDDDGKLVFRVRLYGYTPEDDTEEPISHLRRNHVILYCKRKGLNVPDSIIRARQG 491
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BLAST of Gchil5437.t1 vs. uniprot
Match: R7QG36_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG36_CHOCR)

HSP 1 Score: 63.2 bits (152), Expect = 2.990e-9
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 0 
Query:   13 QEFVIDRIVRHIYTPEGEVRYEVRWYGFSPDEDTVEPIEHLPRSKVLSYHRRARVTLPPNLDLAQVG 79
            QE+VID+IV H Y  E  +  +VRWYG++ ++ T EPIE +PRS V+ Y RR ++ LP     AQ G
Sbjct:  799 QEYVIDKIVDHGYDEEKLI-LKVRWYGYTIEDATWEPIEQIPRSAVVIYFRRKKLPLPTQASHAQPG 864
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BLAST of Gchil5437.t1 vs. uniprot
Match: UPI001E1DDCB5 (M-phase phosphoprotein 8-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DDCB5)

HSP 1 Score: 55.1 bits (131), Expect = 5.320e-7
Identity = 24/51 (47.06%), Postives = 34/51 (66.67%), Query Frame = 0 
Query:   14 EFVIDRIVRHIYTPEGEVRYEVRWYGFSPDEDTVEPIEHLPRSKVLSYHRR 64
            E+V +RIV      +G + Y VRW+G++ D+DT EP EH+P S +  YHRR
Sbjct:  107 EYVFERIVCTKQAKDGPMLYPVRWFGYTRDDDTWEPKEHIPISALRRYHRR 157
The following BLAST results are available for this feature:
BLAST of Gchil5437.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2V3IMH8_9FLOR3.800e-1750.00Chromo domain-containing protein n=1 Tax=Gracilari... [more]
A0A2V3IM99_9FLOR2.390e-1249.25Chromo domain-containing protein n=1 Tax=Gracilari... [more]
A0A2V3ITV0_9FLOR1.770e-946.48DNA (Cytosine-5)-methyltransferase CMT2 n=1 Tax=Gr... [more]
R7QIA9_CHOCR2.070e-938.81Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QG36_CHOCR2.990e-947.76Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
UPI001E1DDCB55.320e-747.06M-phase phosphoprotein 8-like n=1 Tax=Mercenaria m... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000953Chromo/chromo shadow domainSMARTSM00298chromo_7coord: 14..66
e-value: 4.4E-6
score: 36.2
IPR000953Chromo/chromo shadow domainPROSITEPS50013CHROMO_2coord: 15..74
score: 9.317601
IPR023780Chromo domainPFAMPF00385Chromocoord: 15..64
e-value: 1.9E-7
score: 30.8
NoneNo IPR availableGENE3D2.40.50.40coord: 12..68
e-value: 5.2E-10
score: 40.9
NoneNo IPR availableCDDcd00024CD_CSDcoord: 15..53
e-value: 5.599E-7
score: 41.3085
IPR016197Chromo-like domain superfamilySUPERFAMILY54160Chromo domain-likecoord: 11..64

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:1721615..1722090 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5437.t1Gchil5437.t1Gracilaria chilensis NLEC103_M9 malemRNAtig00004418_pilon 1721615..1722090 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gchil5437.t1 ID=Gchil5437.t1|Name=Gchil5437.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=115bp
MEEKPEQGKVYPQEFVIDRIVRHIYTPEGEVRYEVRWYGFSPDEDTVEPI
EHLPRSKVLSYHRRARVTLPPNLDLAQVGAVNRGTQHRLSGQFMMKKEKK
THEVEKKIKKKIGP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000953Chromo/chromo_shadow_dom
IPR023780Chromo_domain
IPR016197Chromo-like_dom_sf