Gchil5437.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil5437.t1
Unique NameGchil5437.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length115
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004418_piloncontigtig00004418_pilon:1721615..1722090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog176946.XP_007443986.1
Preferred nameMPHOSPH8
PFAMsAnk_2,Ank_5,Chromo
Max annot lvl33208|Metazoa
KEGG koko:K21871
GOsGO:0000151,GO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0000792,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005720,GO:0005730,GO:0005737,GO:0005829,GO:0005886,GO:0006355,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016020,GO:0016567,GO:0016740,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019899,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031625,GO:0031974,GO:0031981,GO:0032446,GO:0032991,GO:0032993,GO:0035064,GO:0036211,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0044030,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0045892,GO:0045934,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051052,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0060255,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0071944,GO:0080090,GO:0140030,GO:0140034,GO:0140096,GO:1901564,GO:1902494,GO:1902679,GO:1903506,GO:1903507,GO:1990234,GO:2000112,GO:2000113,GO:2001141
Evalue5.11e-05
EggNOG OGsCOG0666@1|root,KOG1911@1|root,KOG0504@2759|Eukaryota,KOG1911@2759|Eukaryota,39RXZ@33154|Opisthokonta,3BH9T@33208|Metazoa,3D2WB@33213|Bilateria,48BAD@7711|Chordata,492US@7742|Vertebrata
Descriptionregulation of DNA methylation
COG categoryB
BRITEko00000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil5437Gchil5437Gracilaria chilensis NLEC103_M9 malegenetig00004418_pilon 1721615..1722090 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5437.t1Gchil5437.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004418_pilon 1721615..1722090 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5437.t1.stop1Gchil5437.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004418_pilon 1721615..1721617 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5437.t1.CDS1Gchil5437.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1721615..1721723 -
Gchil5437.t1.CDS2Gchil5437.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004418_pilon 1721855..1722090 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5437.t1.exon1Gchil5437.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1721615..1721723 -
Gchil5437.t1.exon2Gchil5437.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004418_pilon 1721855..1722090 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5437.t1.intron1Gchil5437.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004418_pilon 1721724..1721854 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil5437.t1.start1Gchil5437.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004418_pilon 1722088..1722090 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil5437.t1 ID=Gchil5437.t1|Name=Gchil5437.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=115bp
MEEKPEQGKVYPQEFVIDRIVRHIYTPEGEVRYEVRWYGFSPDEDTVEPI
EHLPRSKVLSYHRRARVTLPPNLDLAQVGAVNRGTQHRLSGQFMMKKEKK
THEVEKKIKKKIGP*
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spliced messenger RNA

>Gchil5437.t1 ID=Gchil5437.t1|Name=Gchil5437.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=345bp|location=Sequence derived from alignment at tig00004418_pilon:1721615..1722090- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAGAGAAGCCCGAACAGGGAAAAGTGTACCCGCAGGAATTCGTTAT
CGATCGCATCGTGCGTCACATCTACACCCCCGAGGGAGAAGTTCGCTACG
AAGTCCGATGGTACGGATTCTCGCCTGATGAGGATACAGTGGAACCCATT
GAGCACCTTCCGAGGTCTAAGGTTTTATCCTATCACCGACGCGCTCGGGT
AACCTTGCCTCCAAATCTGGATCTTGCCCAAGTCGGCGCCGTTAACCGGG
GAACACAGCACCGGTTATCGGGACAGTTTATGATGAAAAAGGAAAAGAAG
ACCCACGAAGTGGAGAAGAAGATTAAGAAGAAGATTGGACCCTAG
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protein sequence of Gchil5437.t1

>Gchil5437.t1 ID=Gchil5437.t1|Name=Gchil5437.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=115bp
MEEKPEQGKVYPQEFVIDRIVRHIYTPEGEVRYEVRWYGFSPDEDTVEPI
EHLPRSKVLSYHRRARVTLPPNLDLAQVGAVNRGTQHRLSGQFMMKKEKK
THEVEKKIKKKIGP*
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mRNA from alignment at tig00004418_pilon:1721615..1722090-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil5437.t1 ID=Gchil5437.t1|Name=Gchil5437.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=476bp|location=Sequence derived from alignment at tig00004418_pilon:1721615..1722090- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGAGAAGCCCGAACAGGGAAAAGTGTACCCGCAGGAATTCGTTAT
CGATCGCATCGTGCGTCACATCTACACCCCCGAGGGAGAAGTTCGCTACG
AAGTCCGATGGTACGGATTCTCGCCTGATGAGGATACAGTGGAACCCATT
GAGCACCTTCCGAGGTCTAAGGTTTTATCCTATCACCGACGCGCTCGGGT
AACCTTGCCTCCAAATCTGGATCTTGCCCAAGTCGGGTAAGCCACCACGG
GAACTGGTGTGGATGCGACCTCGAAGTGAGGAAGATGTTGGACCTCTGAA
GAGGAATTGAGGAGAGTATCCCGAAGAACACGTATTGAGAGGGAATGTCT
ACTGGCCCTCGGCCTAGCGCCGTTAACCGGGGAACACAGCACCGGTTATC
GGGACAGTTTATGATGAAAAAGGAAAAGAAGACCCACGAAGTGGAGAAGA
AGATTAAGAAGAAGATTGGACCCTAG
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Coding sequence (CDS) from alignment at tig00004418_pilon:1721615..1722090-

>Gchil5437.t1 ID=Gchil5437.t1|Name=Gchil5437.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=345bp|location=Sequence derived from alignment at tig00004418_pilon:1721615..1722090- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAGAGAAGCCCGAACAGGGAAAAGTGTACCCGCAGGAATTCGTTAT
CGATCGCATCGTGCGTCACATCTACACCCCCGAGGGAGAAGTTCGCTACG
AAGTCCGATGGTACGGATTCTCGCCTGATGAGGATACAGTGGAACCCATT
GAGCACCTTCCGAGGTCTAAGGTTTTATCCTATCACCGACGCGCTCGGGT
AACCTTGCCTCCAAATCTGGATCTTGCCCAAGTCGGCGCCGTTAACCGGG
GAACACAGCACCGGTTATCGGGACAGTTTATGATGAAAAAGGAAAAGAAG
ACCCACGAAGTGGAGAAGAAGATTAAGAAGAAGATTGGACCCTAG
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