Gchil534.t1 (polypeptide) Gracilaria chilensis NLEC103_M9 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gchil534.t1
Unique Name	Gchil534.t1
Type	polypeptide
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	620

Homology

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BLAST of Gchil534.t1 vs. uniprot
Match: A0A2V3IPS6_9FLOR (DRBM domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPS6_9FLOR)

HSP 1 Score: 161 bits (407), Expect = 3.240e-38
Identity = 189/651 (29.03%), Postives = 271/651 (41.63%), Query Frame = 0

Query:    1 MASRRDAASNMLRQIYAKGLPPGPASAAVTAXXXXXXXXXXPPMLAQPISQQ---PVNQSSYPLHSRSFSS---------NYASYPQPA-LHS-PLTNQPIHPVKQQPLQXXXXXXLSHSQTLHPHSPPXXXXXXXXLRSHPSQQYQLPAQHPIPPNHSLHHQPPLXXXXXXXXXXXXXXXXXXXXTLRPVQDHKPQPLQPXXXXXXXXXXXXLFYVDRSPDSDLERELEXXXXXXXXXXXXPAHEGTSQQPTQTAAMHTIPDASRSTSAPQTVSGAQPLTTPSHVPTSIAPRPTNXXXXXXXXXXXXXXXXXXXXAVPSVAQLAHQIATPSKDIEMAPLPSSEVETGAKRVDKPIPAFQQVQTSAMPAVPRSTTVLDASATSPASGLGSQDLMHGRTHAAN---NIDFARTAGIFASALPHVQPSVSQKNG---------------HTASKSDASS---AVPHLKRRLGTDSQWPGVNGKGDKIMTAEPLPKKARGMSSPPATPIEFHILCAYDENVRKCLQELFAANLFILPRIHLFSSDNGLELIEVAPGVSVPVTTFEQNVGERPEHVAVALAFEAGSLSTDLWVARAKHLAKGLQSALMPRMVLLSTNPLLQAFAKMDVIDVVDPKDSLVGYALEILQQSSQNQGK 616
            ++SRRDAA NMLR IY+K +PP  AS A  A            +  QP  Q    PV Q+      R +SS          ++  PQP+ +H  P   QP HP  +Q           H          XXXXXXXX                   +H   +QP                       ++PVQ+ +P+  Q             +FYVDRSPDS+LERELEXXXX               QQ  Q  A    PDAS   +     S ++  T     P +  PRP N                     +P     A   + PS  +   P  SS ++        PI A          AVP ++  +   + +PAS L +Q   +G + AA    N+  A T    +     V P  ++ +                 T S SD ++   A P LKR+L         NG  +     E   KKA+ + S P+  IEFH LC Y + + +CLQ L  A+LF+ P I +F++      ++ +P ++V V  F  N+      V+VALAFEAG +S ++W+ARAKHL +GL S   P++++L+ +     F K  V DVV P D +  +   ILQ+ + ++ K
Sbjct:  128 LSSRRDAACNMLRIIYSKTVPPH-ASPAAGAANMPRTSSPSHSLAGQPQMQPASYPVTQTRQVFPIRPYSSLPHPSQGRMPHSGVPQPSPVHQGPGHIQPFHPTGKQEQLQPQPPMQQHQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHETQYQP-----------QQPELGAQEQQNVQPVQE-QPEGQQ---VKQKEEEQEPMFYVDRSPDSELERELEXXXXQQKQL-------SAEQQALQPPA----PDASAEEAVKPVASNSESSTAQPSAPQASVPRPVNESGPPMLRSKP----------IPVSTSGATSASLPSSSVNATP--SSPLKPMFSVAATPISAHPVRDPRVAVAVPSASAAVSVGSGNPASALQNQSPTNGASAAAEIATNVSVALTPVRESDPPESVGPPSTKPSNPPLSSVKAESSLLPEQTVSLSDGNTIPAAAPSLKRKLNHAVTDRNANGSTNGTAAVEQARKKAKPLLSNPSVRIEFHFLCIYSDVIMRCLQNLIGADLFMRPVIRMFTAAKVPIRVQFSPNLNVEVKQFSCNIQNDISRVSVALAFEAGIISNEMWIARAKHLEEGLSSMYWPQLIILNNDLCFDIFKKNGVTDVVKPSDDVAAHVSRILQRIANSEVK 739

The following BLAST results are available for this feature:

BLAST of Gchil534.t1 vs. uniprot

BLAST of Gchil534.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IPS6_9FLOR	3.240e-38	29.03	DRBM domain-containing protein n=1 Tax=Gracilariop...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 208..228
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 112..133 score: 34.55 coord: 135..151 score: 34.12 coord: 187..212 score: 27.69 coord: 152..169 score: 27.78 coord: 74..86 score: 29.23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 201..221
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 181..200
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..300
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 409..424
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 409..437
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..125
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 144..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 222..300
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 27..38
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 39..46
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..46
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 47..619
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..26

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000060_pilon	contig	tig00000060_pilon:730182..732041 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil534.t1	Gchil534.t1	Gracilaria chilensis NLEC103_M9 male	mRNA	tig00000060_pilon 730182..732041 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gchil534.t1 ID=Gchil534.t1|Name=Gchil534.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=620bp
MASRRDAASNMLRQIYAKGLPPGPASAAVTAAAAAAASSASPPMLAQPIS
QQPVNQSSYPLHSRSFSSNYASYPQPALHSPLTNQPIHPVKQQPLQQPLS
YPLSHSQTLHPHSPPPPPPQPQPLRSHPSQQYQLPAQHPIPPNHSLHHQP
PLHQPPQHQPPHQPPPQQHRPSTLRPVQDHKPQPLQPPPPPPPPEEEPPL
FYVDRSPDSDLERELEQQEQQEQQEQHQPAHEGTSQQPTQTAAMHTIPDA
SRSTSAPQTVSGAQPLTTPSHVPTSIAPRPTNTPQPSVAVAATPTTTGPT
STAVPSVAQLAHQIATPSKDIEMAPLPSSEVETGAKRVDKPIPAFQQVQT
SAMPAVPRSTTVLDASATSPASGLGSQDLMHGRTHAANNIDFARTAGIFA
SALPHVQPSVSQKNGHTASKSDASSAVPHLKRRLGTDSQWPGVNGKGDKI
MTAEPLPKKARGMSSPPATPIEFHILCAYDENVRKCLQELFAANLFILPR
IHLFSSDNGLELIEVAPGVSVPVTTFEQNVGERPEHVAVALAFEAGSLST
DLWVARAKHLAKGLQSALMPRMVLLSTNPLLQAFAKMDVIDVVDPKDSLV
GYALEILQQSSQNQGKALE*